diff options
| author | Alexey Dokuchaev <danfe@FreeBSD.org> | 2013-11-01 15:20:28 +0000 |
|---|---|---|
| committer | Alexey Dokuchaev <danfe@FreeBSD.org> | 2013-11-01 15:20:28 +0000 |
| commit | 0b0738811e2670fb60c22c58476fa2349a9591a7 (patch) | |
| tree | 786a1102c00bc643c5d0bc468ab9966598745f8d /biology | |
| parent | 0f3275a4acb734704e0d86cae0f4ed064adcc922 (diff) | |
| download | ports-0b0738811e2670fb60c22c58476fa2349a9591a7.tar.gz ports-0b0738811e2670fb60c22c58476fa2349a9591a7.zip | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/ugene/Makefile | 13 | ||||
| -rw-r--r-- | biology/ugene/distinfo | 10 | ||||
| -rw-r--r-- | biology/ugene/pkg-plist | 1 |
3 files changed, 21 insertions, 3 deletions
diff --git a/biology/ugene/Makefile b/biology/ugene/Makefile index e1a7817c020f..849354106843 100644 --- a/biology/ugene/Makefile +++ b/biology/ugene/Makefile @@ -5,6 +5,9 @@ PORTNAME= ugene DISTVERSION= 1.12.3 CATEGORIES= biology MASTER_SITES= http://ugene.unipro.ru/downloads/ +DISTFILES= ${DISTNAME}${EXTRACT_SUFX} ${PORTDOCS} +DIST_SUBDIR= ${PORTNAME} +EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= h2+fbsdports@fsfe.org COMMENT= Free, open-source, cross-platform bioinformatics toolkit @@ -28,6 +31,13 @@ QMAKE_ARGS= INSTALL_PREFIX=${PREFIX} UGENE_INSTALL_DATA=${DATADIR} \ INSTALL_MANDIR=${MAN1PREFIX}/man ALL_TARGET= release +DOCSDIR= ${DATADIR}/manuals +PORTDOCS= QueryDesigner_UserManual.pdf UniproUGENE_UserManual.pdf \ + WorkflowDesigner_UserManual.pdf + +OPTIONS_DEFINE= DOCS +DOCS_DESC= Install official UGENE documentation (PDF) + .include <bsd.port.pre.mk> .if ${OSVERSION} > 1000054 @@ -46,6 +56,9 @@ PLIST_SUB= NOX64="" QMAKE_ARGS+= UGENE_SSE2_DETECTED=1 .endif +post-extract: + ${CP} -p ${_DISTDIR}/*.pdf ${WRKSRC}/data/manuals + post-patch: # yes, bash is required, stuff will not execute with sh @${REINPLACE_CMD} -e 's|/bin/bash|/usr/bin/env bash|' \ diff --git a/biology/ugene/distinfo b/biology/ugene/distinfo index bad5b97da265..f98ab73b0828 100644 --- a/biology/ugene/distinfo +++ b/biology/ugene/distinfo @@ -1,2 +1,8 @@ -SHA256 (ugene-1.12.3.tar.gz) = 6642ec6ef5110b50b38c9620be4a98101d9a7b325a61a202ee7e0f2c67d45496 -SIZE (ugene-1.12.3.tar.gz) = 17611949 +SHA256 (ugene/ugene-1.12.3.tar.gz) = 6642ec6ef5110b50b38c9620be4a98101d9a7b325a61a202ee7e0f2c67d45496 +SIZE (ugene/ugene-1.12.3.tar.gz) = 17611949 +SHA256 (ugene/QueryDesigner_UserManual.pdf) = 3c5bd735c02b7ac24bd319823fde2d175b750adc1c37fe7b17e2009452a00ddd +SIZE (ugene/QueryDesigner_UserManual.pdf) = 1306825 +SHA256 (ugene/UniproUGENE_UserManual.pdf) = 6c682c86f47a4c337eb4acdf0ae23ffa1b7fef1337d11e631655bfc943167b46 +SIZE (ugene/UniproUGENE_UserManual.pdf) = 12166178 +SHA256 (ugene/WorkflowDesigner_UserManual.pdf) = 077bdd961a2b5dd077b15e7ca6d658ca58cd80c01e5f2dfbb69744d651e85601 +SIZE (ugene/WorkflowDesigner_UserManual.pdf) = 1288440 diff --git a/biology/ugene/pkg-plist b/biology/ugene/pkg-plist index e0f4ae7a6206..656da76b46ef 100644 --- a/biology/ugene/pkg-plist +++ b/biology/ugene/pkg-plist @@ -1276,7 +1276,6 @@ share/pixmaps/ugene.xpm @dirrm %%DATADIR%%/position_weight_matrix/JASPAR/fungi @dirrm %%DATADIR%%/position_weight_matrix/JASPAR @dirrm %%DATADIR%%/position_weight_matrix -@dirrm %%DATADIR%%/manuals @dirrm %%DATADIR%%/enzymes @dirrm %%DATADIR%%/cmdline @dirrm %%DATADIR%%/biostruct3d_plugin |