aboutsummaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authorWen Heping <wen@FreeBSD.org>2013-07-20 10:04:32 +0000
committerWen Heping <wen@FreeBSD.org>2013-07-20 10:04:32 +0000
commit881d1953d700656e61fffc9e967017af0390c813 (patch)
tree3813f5d106ce334916d06d2fba6c328191f8a8d4 /biology
parent75445be75e27236438a92497876dc0858d664270 (diff)
downloadports-881d1953d700656e61fffc9e967017af0390c813.tar.gz
ports-881d1953d700656e61fffc9e967017af0390c813.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-Bio-Phylo/Makefile8
-rw-r--r--biology/p5-Bio-Phylo/distinfo4
-rw-r--r--biology/p5-Bio-Phylo/pkg-plist4
3 files changed, 13 insertions, 3 deletions
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index de3ab85500cc..7affa42f5e08 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= Bio-Phylo
-PORTVERSION= 0.52
+PORTVERSION= 0.56
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
@@ -52,10 +52,13 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Matrices::Datatype::Continuous.3 \
Bio::Phylo::Matrices::Datatype::Custom.3 \
Bio::Phylo::Matrices::Datatype::Dna.3 \
+ Bio::Phylo::Matrices::Datatype::Illumina.3 \
Bio::Phylo::Matrices::Datatype::Mixed.3 \
Bio::Phylo::Matrices::Datatype::Protein.3 \
Bio::Phylo::Matrices::Datatype::Restriction.3 \
Bio::Phylo::Matrices::Datatype::Rna.3 \
+ Bio::Phylo::Matrices::Datatype::Sanger.3 \
+ Bio::Phylo::Matrices::Datatype::Solexa.3 \
Bio::Phylo::Matrices::Datatype::Standard.3 \
Bio::Phylo::Matrices::Datum.3 \
Bio::Phylo::Matrices::DatumRole.3 \
@@ -77,6 +80,7 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Parsers::Abstract.3 \
Bio::Phylo::Parsers::Adjacency.3 \
Bio::Phylo::Parsers::Fasta.3 \
+ Bio::Phylo::Parsers::Fastq.3 \
Bio::Phylo::Parsers::Figtree.3 \
Bio::Phylo::Parsers::Json.3 \
Bio::Phylo::Parsers::Newick.3 \
@@ -133,10 +137,12 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Unparsers::Rss1.3 \
Bio::Phylo::Unparsers::Taxlist.3 \
Bio::Phylo::Util::CONSTANT.3 \
+ Bio::Phylo::Util::CONSTANT::Int.3 \
Bio::Phylo::Util::Dependency.3 \
Bio::Phylo::Util::Exceptions.3 \
Bio::Phylo::Util::IDPool.3 \
Bio::Phylo::Util::Logger.3 \
+ Bio::Phylo::Util::MOP.3 \
Bio::Phylo::Util::OptionalInterface.3 \
Bio::Phylo::Util::StackTrace.3 \
Bio::PhyloRole.3
diff --git a/biology/p5-Bio-Phylo/distinfo b/biology/p5-Bio-Phylo/distinfo
index 2c252b8dad94..e1a8af4831ad 100644
--- a/biology/p5-Bio-Phylo/distinfo
+++ b/biology/p5-Bio-Phylo/distinfo
@@ -1,2 +1,2 @@
-SHA256 (Bio-Phylo-0.52.tar.gz) = 5c023acc76fb643581bc3612a80e9081ad1a795270bbc02a15f4460637c526c3
-SIZE (Bio-Phylo-0.52.tar.gz) = 398024
+SHA256 (Bio-Phylo-0.56.tar.gz) = f10e7d4c24911c18f0f055b1f2f910507a34b1256e1bdaf139bd502368240bd9
+SIZE (Bio-Phylo-0.56.tar.gz) = 472198
diff --git a/biology/p5-Bio-Phylo/pkg-plist b/biology/p5-Bio-Phylo/pkg-plist
index 6738dcdfc522..ccacd31eb8dc 100644
--- a/biology/p5-Bio-Phylo/pkg-plist
+++ b/biology/p5-Bio-Phylo/pkg-plist
@@ -22,10 +22,13 @@
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Continuous.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Custom.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Dna.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Illumina.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Mixed.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Protein.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Restriction.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Rna.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Sanger.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Solexa.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Standard.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/DatumRole.pm
@@ -53,6 +56,7 @@
%%SITE_PERL%%/Bio/Phylo/Parsers/Abstract.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Adjacency.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Fasta.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Fastq.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Figtree.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Json.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm