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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2022-02-03 19:37:21 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2022-02-03 19:38:42 +0000 |
| commit | d936c94c64a84e88f8c9fbe350aa0445fda80a06 (patch) | |
| tree | 4d8c93059db6cf1fba1cc7812423ce4d887e47d6 /biology | |
| parent | ae84243f743832495d405957f312df764b5367e2 (diff) | |
| download | ports-d936c94c64a84e88f8c9fbe350aa0445fda80a06.tar.gz ports-d936c94c64a84e88f8c9fbe350aa0445fda80a06.zip | |
biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)
Read and write Generic Feature Format (GFF) with Biopython integration.
Also adding py-dna-features-viewer to Makefile, missed on last commit
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 2 | ||||
| -rw-r--r-- | biology/py-bcbio-gff/Makefile | 16 | ||||
| -rw-r--r-- | biology/py-bcbio-gff/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-bcbio-gff/pkg-descr | 3 |
4 files changed, 24 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 4e16a737f636..6712e8a40155 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -141,6 +141,7 @@ SUBDIR += psi88 SUBDIR += py-Genesis-PyAPI SUBDIR += py-PySCeS + SUBDIR += py-bcbio-gff SUBDIR += py-biom-format SUBDIR += py-biopython SUBDIR += py-bx-python @@ -148,6 +149,7 @@ SUBDIR += py-cutadapt SUBDIR += py-deeptools SUBDIR += py-deeptoolsintervals + SUBDIR += py-dna-features-viewer SUBDIR += py-dnaio SUBDIR += py-ete3 SUBDIR += py-gffutils diff --git a/biology/py-bcbio-gff/Makefile b/biology/py-bcbio-gff/Makefile new file mode 100644 index 000000000000..b08f6d36f7f2 --- /dev/null +++ b/biology/py-bcbio-gff/Makefile @@ -0,0 +1,16 @@ +PORTNAME= bcbio-gff +DISTVERSION= 0.6.9 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Read and write Generic Feature Format (GFF) with Biopython integration + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +USES= python +USE_PYTHON= autoplist distutils + +.include <bsd.port.mk> diff --git a/biology/py-bcbio-gff/distinfo b/biology/py-bcbio-gff/distinfo new file mode 100644 index 000000000000..72637728bd5c --- /dev/null +++ b/biology/py-bcbio-gff/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1643900022 +SHA256 (bcbio-gff-0.6.9.tar.gz) = 34dfa970e14f4533dc63c0a5512b7b5221e4a06449e6aaa344162ed5fdd7a1de +SIZE (bcbio-gff-0.6.9.tar.gz) = 44236 diff --git a/biology/py-bcbio-gff/pkg-descr b/biology/py-bcbio-gff/pkg-descr new file mode 100644 index 000000000000..2eec0e8e52a5 --- /dev/null +++ b/biology/py-bcbio-gff/pkg-descr @@ -0,0 +1,3 @@ +Read and write Generic Feature Format (GFF) with Biopython integration. + +WWW: https://pypi.python.org/project/bcbio-gff/ |