diff options
author | Dmitry Marakasov <amdmi3@FreeBSD.org> | 2016-05-19 11:09:14 +0000 |
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committer | Dmitry Marakasov <amdmi3@FreeBSD.org> | 2016-05-19 11:09:14 +0000 |
commit | e87a8bd319cefd3a75d9d061fe9ac6bad980b0db (patch) | |
tree | e9e6dc56d6e4b04cfacf45ccb3b74fdd987668e3 /biology | |
parent | 867a3ba355276083619d6e050ed5885ecfc04d75 (diff) | |
download | ports-e87a8bd319cefd3a75d9d061fe9ac6bad980b0db.tar.gz ports-e87a8bd319cefd3a75d9d061fe9ac6bad980b0db.zip |
Notes
Diffstat (limited to 'biology')
-rw-r--r-- | biology/bcftools/files/pkg-message.in | 2 | ||||
-rw-r--r-- | biology/blat/files/pkg-message.in | 4 | ||||
-rw-r--r-- | biology/emboss/files/pkg-message.in | 8 | ||||
-rw-r--r-- | biology/fasta3/files/pkg-message.in | 4 | ||||
-rw-r--r-- | biology/lagan/files/pkg-message.in | 4 | ||||
-rw-r--r-- | biology/samtools/files/pkg-message.in | 2 |
6 files changed, 12 insertions, 12 deletions
diff --git a/biology/bcftools/files/pkg-message.in b/biology/bcftools/files/pkg-message.in index fde8ffcdab72..508265e42c52 100644 --- a/biology/bcftools/files/pkg-message.in +++ b/biology/bcftools/files/pkg-message.in @@ -1,5 +1,5 @@ The miscellaneous tools included with Bcftools have been installed to -%%PREFIX%%/bin/samtools_misc +%%PREFIX%%/bin/samtools_misc Add that directory to your path if you want to use these tools. diff --git a/biology/blat/files/pkg-message.in b/biology/blat/files/pkg-message.in index 1f988c0d687b..62f0ef49d50a 100644 --- a/biology/blat/files/pkg-message.in +++ b/biology/blat/files/pkg-message.in @@ -1,8 +1,8 @@ =============================================================================== A CGI script (webBlat) and instructions on how to set up a BLAT web server - have been installed in - + have been installed in + %%PREFIX%%/lib/blat =============================================================================== diff --git a/biology/emboss/files/pkg-message.in b/biology/emboss/files/pkg-message.in index cdedc5082b5c..b6ec9699274c 100644 --- a/biology/emboss/files/pkg-message.in +++ b/biology/emboss/files/pkg-message.in @@ -5,7 +5,7 @@ To run EMBOSS programs make sure that %%PREFIX%%/bin is in your PATH. - In order to see graphical output from some EMBOSS programs, you will + In order to see graphical output from some EMBOSS programs, you will need to set the following environment variable in your shell: set PLPLOT_LIB to: "%%PREFIX%%/share/EMBOSS" @@ -13,15 +13,15 @@ A sample configuration file has been installed in %%DATADIR%%/emboss.default.template - This must be renamed to emboss.default and edited to suit your site + This must be renamed to emboss.default and edited to suit your site and requirements. A .embossrc file in a user's home directory overrides settings in the system-wide emboss.default. Additional third party applications for EMBOSS can be installed from the - biology/embassy port. Remember, though that if you installed EMBOSS in a - PREFIX other than the default, you will have to install EMBASSY into this + biology/embassy port. Remember, though that if you installed EMBOSS in a + PREFIX other than the default, you will have to install EMBASSY into this same PREFIX. ============================================================================= diff --git a/biology/fasta3/files/pkg-message.in b/biology/fasta3/files/pkg-message.in index f43513546af4..03bb1d8ff0f6 100644 --- a/biology/fasta3/files/pkg-message.in +++ b/biology/fasta3/files/pkg-message.in @@ -2,8 +2,8 @@ The FASTA3 package has been successfully installed. - A sample configuration file has been installed to - %%PREFIX%%/etc + A sample configuration file has been installed to + %%PREFIX%%/etc as "fastlibs.sample". This may be renamed to "fastlibs" and edited to suit the requirements of a particular site. diff --git a/biology/lagan/files/pkg-message.in b/biology/lagan/files/pkg-message.in index 994a417239c8..d2696dff32ee 100644 --- a/biology/lagan/files/pkg-message.in +++ b/biology/lagan/files/pkg-message.in @@ -2,8 +2,8 @@ All the executables, scripts, Readmes and utilities were installed under %%LAGAN_DIR%% - + Add this to your PATH and set the environment variable LAGAN_DIR to point to this directory. - + =============================================================================== diff --git a/biology/samtools/files/pkg-message.in b/biology/samtools/files/pkg-message.in index a9ba5d2e1a7b..e996d1340a7e 100644 --- a/biology/samtools/files/pkg-message.in +++ b/biology/samtools/files/pkg-message.in @@ -1,5 +1,5 @@ The miscellaneous tools included with Samtools have been installed to -%%PREFIX%%/bin/samtools_misc +%%PREFIX%%/bin/samtools_misc Add that directory to your path if you want to use these tools. |