6 files changed, 0 insertions, 129 deletions

diff --git a/biology/Makefile b/biology/Makefile
index aeed4c9b9932..befa0c66ac78 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -107,7 +107,6 @@
     SUBDIR += p5-transdecoder
     SUBDIR += paml
     SUBDIR += pbbam
-    SUBDIR += pbcopper
     SUBDIR += pbseqan
     SUBDIR += pear-merger
     SUBDIR += phrap
diff --git a/biology/pbcopper/Makefile b/biology/pbcopper/Makefile
deleted file mode 100644
index 39b4b0b4ee6a..000000000000
--- a/biology/pbcopper/Makefile
+++ /dev/null
@@ -1,35 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	pbcopper
-DISTVERSION=	0.4.1 # Test with biology/unanimity before upgrading!
-PORTREVISION=	4
-CATEGORIES=	biology
-
-# As of March 2018, unanimity is no longer open source.
-# See https://github.com/PacificBiosciences/ccs.
-MAINTAINER=     ports@FreeBSD.org
-COMMENT=	Core C++ library for Pacific Biosciences tools
-
-LICENSE=	BSD3CLAUSE
-LICENSE_FILE=	${WRKSRC}/LICENSE.txt
-
-BROKEN=		fails to build
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2020-08-26
-
-LIB_DEPENDS=	libboost_regex.so:devel/boost-libs
-
-# Meson needs BOOST_ROOT=${LOCALBASE}
-# https://github.com/mesonbuild/meson/issues/2239
-USES=		compiler:c++14-lang localbase meson
-USE_LDCONFIG=	yes
-USE_GITHUB=	yes
-GH_ACCOUNT=	PacificBiosciences
-
-post-install:
-	${RLN} ${STAGEDIR}${PREFIX}/lib/libpbcopper.so.${PORTVERSION} \
-		${STAGEDIR}${PREFIX}/lib/libpbcopper.so.0.4
-	${RLN} ${STAGEDIR}${PREFIX}/lib/libpbcopper.so.${PORTVERSION} \
-		${STAGEDIR}${PREFIX}/lib/libpbcopper.so.0
-
-.include <bsd.port.mk>
diff --git a/biology/pbcopper/distinfo b/biology/pbcopper/distinfo
deleted file mode 100644
index fafecefe146c..000000000000
--- a/biology/pbcopper/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1550453144
-SHA256 (PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz) = 4c8daf6c1a6efe3860a16fb5b6111ebe65221423254819f3a68a400d0a984fcd
-SIZE (PacificBiosciences-pbcopper-0.4.1_GH0.tar.gz) = 3095846
diff --git a/biology/pbcopper/files/patch-meson__options.txt b/biology/pbcopper/files/patch-meson__options.txt
deleted file mode 100644
index 6d50fa2bf1da..000000000000
--- a/biology/pbcopper/files/patch-meson__options.txt
+++ /dev/null
@@ -1,7 +0,0 @@
---- meson_options.txt.orig	2019-02-17 22:34:29 UTC
-+++ meson_options.txt
-@@ -1,3 +1,3 @@
- option('build-examples', type : 'boolean', value : true,  description : 'Build pbcopper examples')
- option('build-docs',     type : 'boolean', value : false, description : 'Build pbcopper docs')
--option('tests',          type : 'boolean', value : true,  description : 'Enable dependencies required for testing')
-+option('tests',          type : 'boolean', value : false,  description : 'Enable dependencies required for testing')
diff --git a/biology/pbcopper/pkg-descr b/biology/pbcopper/pkg-descr
deleted file mode 100644
index 5f3b33b7cfff..000000000000
--- a/biology/pbcopper/pkg-descr
+++ /dev/null
@@ -1,5 +0,0 @@
-The pbcopper library provides a suite of data structures, algorithms, and
-utilities for C++ applications.  It is a core component of Pacific Biosciences
-genomics analysis tools.
-
-WWW: https://github.com/PacificBiosciences/pbcopper
diff --git a/biology/pbcopper/pkg-plist b/biology/pbcopper/pkg-plist
deleted file mode 100644
index 92caf488a25f..000000000000
--- a/biology/pbcopper/pkg-plist
+++ /dev/null
@@ -1,78 +0,0 @@
-include/pbcopper/PbcopperConfig.h
-include/pbcopper/PbcopperMakeUnique.h
-include/pbcopper/align/Seed.h
-include/pbcopper/align/Seeds.h
-include/pbcopper/align/internal/Seed-inl.h
-include/pbcopper/align/internal/Seeds-inl.h
-include/pbcopper/cli/CLI.h
-include/pbcopper/cli/HelpPrinter.h
-include/pbcopper/cli/Interface.h
-include/pbcopper/cli/Option.h
-include/pbcopper/cli/OptionFlags.h
-include/pbcopper/cli/Parser.h
-include/pbcopper/cli/PositionalArg.h
-include/pbcopper/cli/Results.h
-include/pbcopper/cli/SingleDashMode.h
-include/pbcopper/cli/VersionPrinter.h
-include/pbcopper/cli/internal/Option-inl.h
-include/pbcopper/cli/toolcontract/Config.h
-include/pbcopper/cli/toolcontract/Driver.h
-include/pbcopper/cli/toolcontract/InputFileType.h
-include/pbcopper/cli/toolcontract/JsonPrinter.h
-include/pbcopper/cli/toolcontract/OutputFileType.h
-include/pbcopper/cli/toolcontract/ResolvedToolContract.h
-include/pbcopper/cli/toolcontract/ResourceType.h
-include/pbcopper/cli/toolcontract/Task.h
-include/pbcopper/cli/toolcontract/TaskType.h
-include/pbcopper/cli/toolcontract/internal/Driver-inl.h
-include/pbcopper/cli/toolcontract/internal/InputFileType-inl.h
-include/pbcopper/cli/toolcontract/internal/OutputFileType-inl.h
-include/pbcopper/cli/toolcontract/internal/Task-inl.h
-include/pbcopper/data/CCSTag.h
-include/pbcopper/data/Cigar.h
-include/pbcopper/data/CigarOperation.h
-include/pbcopper/data/Interval.h
-include/pbcopper/data/MovieName.h
-include/pbcopper/data/Position.h
-include/pbcopper/data/RSMovieName.h
-include/pbcopper/data/RSReadName.h
-include/pbcopper/data/ReadName.h
-include/pbcopper/data/Zmw.h
-include/pbcopper/data/internal/CigarOperation-inl.h
-include/pbcopper/data/internal/Interval-inl.h
-include/pbcopper/data/internal/MovieName-inl.h
-include/pbcopper/data/internal/RSMovieName-inl.h
-include/pbcopper/data/internal/ReadNameBase-inl.h
-include/pbcopper/data/internal/ReadNameBase.h
-include/pbcopper/json/JSON.h
-include/pbcopper/json/internal/json.hpp
-include/pbcopper/logging/Logging.h
-include/pbcopper/logging/internal/Logging-inl.h
-include/pbcopper/parallel/FireAndForget.h
-include/pbcopper/parallel/WorkQueue.h
-include/pbcopper/qgram/Index.h
-include/pbcopper/qgram/IndexHit.h
-include/pbcopper/qgram/IndexHits.h
-include/pbcopper/qgram/internal/Hashing-inl.h
-include/pbcopper/qgram/internal/Index-inl.h
-include/pbcopper/stream/Stream.h
-include/pbcopper/utility/CallbackTimer.h
-include/pbcopper/utility/EnumClassHash.h
-include/pbcopper/utility/FileUtils.h
-include/pbcopper/utility/MoveAppend.h
-include/pbcopper/utility/PbcopperVersion.h
-include/pbcopper/utility/SafeSubtract.h
-include/pbcopper/utility/Stopwatch.h
-include/pbcopper/utility/StringUtils.h
-include/pbcopper/utility/SystemInfo.h
-include/pbcopper/utility/Unused.h
-include/pbcopper/utility/internal/CallbackTimer-inl.h
-include/pbcopper/utility/internal/FileUtils-inl.h
-include/pbcopper/utility/internal/Stopwatch-inl.h
-include/pbcopper/utility/internal/StringUtils-inl.h
-include/pbcopper/utility/internal/SystemInfo-inl.h
-lib/libpbcopper.so
-lib/libpbcopper.so.0
-lib/libpbcopper.so.0.4
-lib/libpbcopper.so.0.4.1
-libdata/pkgconfig/pbcopper.pc