21 files changed, 36 insertions, 36 deletions

diff --git a/biology/ariadne/pkg-descr b/biology/ariadne/pkg-descr
index e1df53602fbf..e7566af34e4d 100644
--- a/biology/ariadne/pkg-descr
+++ b/biology/ariadne/pkg-descr
@@ -13,6 +13,6 @@ the time.
 The package is written in ANSI C. You are free to incorporate the method
 used for assessing statistical significance into third-party code,
 provided you cite the above reference. The routines for assessing
-significance are all in gaplib.c 
+significance are all in gaplib.c
 
 WWW: http://www.well.ox.ac.uk/ariadne/
diff --git a/biology/biojava/pkg-descr b/biology/biojava/pkg-descr
index 37016467fb0c..93982d73f041 100644
--- a/biology/biojava/pkg-descr
+++ b/biology/biojava/pkg-descr
@@ -1,7 +1,7 @@
 The BioJava Project is an open-source project dedicated to providing Java
 tools for processing biological data. This will include objects for
 manipulating sequences, file parsers, CORBA interoperability, access to
-ACeDB, dynamic programming, and simple statistical routines. 
+ACeDB, dynamic programming, and simple statistical routines.
 
 The BioJava library is useful for automating those daily and mundane
 bioinformatics tasks. As the library matures, the BioJava libraries will
diff --git a/biology/clustalw/pkg-descr b/biology/clustalw/pkg-descr
index ac19156688eb..0d1088f1ff0e 100644
--- a/biology/clustalw/pkg-descr
+++ b/biology/clustalw/pkg-descr
@@ -3,6 +3,6 @@ DNA or proteins. It produces biologically meaningful multiple sequence
 alignments of divergent sequences. It calculates the best match for the
 selected sequences, and lines them up so that the identities,
 similarities and differences can be seen. Evolutionary relationships
-can be seen via viewing Cladograms or Phylograms. 
+can be seen via viewing Cladograms or Phylograms.
 
 WWW: http://www.clustal.org/
diff --git a/biology/emboss/pkg-descr b/biology/emboss/pkg-descr
index 0cbc7428e98c..8ae8809941d5 100644
--- a/biology/emboss/pkg-descr
+++ b/biology/emboss/pkg-descr
@@ -13,6 +13,6 @@ core libraries which are under the LGPL.
 EMBASSY packages are third party applications which have been integrated with
 the EMBOSS suite, but which are not included in the base EMBOSS distribution
 for licensing or other reasons. The EMBASSY packages live in the
-biology/embassy port. 
+biology/embassy port.
 
 WWW: http://www.emboss.org/
diff --git a/biology/grappa/pkg-descr b/biology/grappa/pkg-descr
index ce732438a251..a9e297e44e58 100644
--- a/biology/grappa/pkg-descr
+++ b/biology/grappa/pkg-descr
@@ -1,6 +1,6 @@
 GRAPPA: Genome Rearrangements Analysis under Parsimony and other
 Phylogenetic Algorithms
-				     
+
 This suite of programs implements the approach to phylogeny
 reconstruction from gene orders described in the paper
    Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M.,
@@ -12,6 +12,6 @@ such trees that obey (are refinements of) a particular constraint tree.
 
 "invdist" takes the first two genomes in the input file and returns
 their inversion distance.
-"distmat" prints the inversion and breakpoint distance matrices. 
+"distmat" prints the inversion and breakpoint distance matrices.
 
 WWW: http://www.cs.unm.edu/~moret/GRAPPA/
diff --git a/biology/jalview/pkg-descr b/biology/jalview/pkg-descr
index 74d38570a4e6..dd89d5cac1a6 100644
--- a/biology/jalview/pkg-descr
+++ b/biology/jalview/pkg-descr
@@ -1,8 +1,8 @@
 Jalview is a multiple alignment editor written in Java. It is used widely in a
 variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain
-database) and is also available as a general purpose alignment editor. 
+database) and is also available as a general purpose alignment editor.
 
-o Reads and writes alignments in a variety of formats 
+o Reads and writes alignments in a variety of formats
 o Gaps can be inserted/deleted using the mouse.
 o Group editing (insertion deletion of gaps in groups of sequences).
 o Removal of gapped columns.
@@ -20,6 +20,6 @@ o Print your alignment with colours and annotations.
 o Output alignments as HTML pages, images (PNG) or postscript (EPS).
 
 If you use Jalview in your work, please quote this publication. Clamp, M., et
-al. (2004), The Jalview Java Alignment Editor. Bioinformatics, 12, 426-7 
+al. (2004), The Jalview Java Alignment Editor. Bioinformatics, 12, 426-7
 
 WWW: http://www.jalview.org
diff --git a/biology/mafft/pkg-descr b/biology/mafft/pkg-descr
index 3a569feb4376..9343adf34816 100644
--- a/biology/mafft/pkg-descr
+++ b/biology/mafft/pkg-descr
@@ -11,6 +11,6 @@ Recent developments in the MAFFT multiple sequence alignment program.
 
 K. Katoh, K. Misawa, K. Kuma and T. Miyata (Nucleic Acids Res. 30:
 3059-3066, 2002) MAFFT: a novel method for rapid multiple sequence
-alignment based on fast Fourier transform. 
+alignment based on fast Fourier transform.
 
 WWW: http://mafft.cbrc.jp/alignment/software/
diff --git a/biology/mapm3/pkg-descr b/biology/mapm3/pkg-descr
index 047ad9a17f87..cf03caeaf049 100644
--- a/biology/mapm3/pkg-descr
+++ b/biology/mapm3/pkg-descr
@@ -1,13 +1,13 @@
-MAPMAKER/EXP is a linkage analysis package designed to help construct primary 
-linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP 
-performs full multipoint linkage analysis (simultaneous estimation of all 
+MAPMAKER/EXP is a linkage analysis package designed to help construct primary
+linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
+performs full multipoint linkage analysis (simultaneous estimation of all
 recombination fractions from the primary data) for dominant, recessive, and co-
-dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only 
+dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
 successor to the original MAPMAKER program.
 
-MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map 
-genes controlling polygenic quantitative traits in F2 intercrosses and BC1 
-backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL 
-can be found in the technical report (included with MAPMAKER/QTL).  
+MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
+genes controlling polygenic quantitative traits in F2 intercrosses and BC1
+backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
+can be found in the technical report (included with MAPMAKER/QTL).
 
 WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
diff --git a/biology/molden/pkg-descr b/biology/molden/pkg-descr
index 3237ec4a0394..f27324fc3da3 100644
--- a/biology/molden/pkg-descr
+++ b/biology/molden/pkg-descr
@@ -8,7 +8,7 @@ By the distribution policy of the author;
  * Only the latest version is supplied.
  * Users must get the `distfiles' from the original site.
  * Do not re-distribute the source and the executable.
- * Using a not-so-latest version is prohibited, because 
+ * Using a not-so-latest version is prohibited, because
    the author may only respond about the latest version.
 
 WWW: http://www.cmbi.ru.nl/molden/
diff --git a/biology/p5-Bio-ASN1-EntrezGene/pkg-descr b/biology/p5-Bio-ASN1-EntrezGene/pkg-descr
index 59ded29ffe38..31a192ccaaf7 100644
--- a/biology/p5-Bio-ASN1-EntrezGene/pkg-descr
+++ b/biology/p5-Bio-ASN1-EntrezGene/pkg-descr
@@ -7,5 +7,5 @@ gene record.
 
 The parser will report error & line number if input data does not conform
 to the NCBI Entrez Gene genome annotation file format.
- 
+
 WWW: http://search.cpan.org/dist/Bio-ASN1-EntrezGene/
diff --git a/biology/p5-Bio-NEXUS/pkg-descr b/biology/p5-Bio-NEXUS/pkg-descr
index a267b121c6e8..c0b839a81b94 100644
--- a/biology/p5-Bio-NEXUS/pkg-descr
+++ b/biology/p5-Bio-NEXUS/pkg-descr
@@ -9,6 +9,6 @@ PAUP*, MacClade, Mesquite, SIMMAP, MrBayes, Nexplorer, and
 so on.  This package also contains the demonstration applications
 nexplot.pl (plot character data with a tree) and nextool.pl
 (allowing programmatic editing, e.g., selecting particular
-clades or subsets of data). 
+clades or subsets of data).
 
 WWW: http://search.cpan.org/dist/Bio-NEXUS/
diff --git a/biology/p5-Bio-Phylo/pkg-descr b/biology/p5-Bio-Phylo/pkg-descr
index 6c164e563533..54349044bc94 100644
--- a/biology/p5-Bio-Phylo/pkg-descr
+++ b/biology/p5-Bio-Phylo/pkg-descr
@@ -1,5 +1,5 @@
-This is the base class for the Bio::Phylo package. All other modules 
-inherit from it, the methods defined here are applicable to all. Consult 
+This is the base class for the Bio::Phylo package. All other modules
+inherit from it, the methods defined here are applicable to all. Consult
 the manual for usage examples: Bio::Phylo::Manual.
 
 WWW: http://search.cpan.org/dist/Bio-Phylo/
diff --git a/biology/p5-bioperl/pkg-descr b/biology/p5-bioperl/pkg-descr
index d8e92750eca9..a993ffada2fe 100644
--- a/biology/p5-bioperl/pkg-descr
+++ b/biology/p5-bioperl/pkg-descr
@@ -1,5 +1,5 @@
 The Bioperl Project is an international association of developers of open
-source Perl tools for bioinformatics, genomics and life science research. 
+source Perl tools for bioinformatics, genomics and life science research.
 
 Bioperl is a collection of object-oriented Perl modules created by the
 Bioperl Project.  It forms the basis of a large number of bioinformatics and
diff --git a/biology/paml/pkg-descr b/biology/paml/pkg-descr
index e0fa64554306..142aea337cd7 100644
--- a/biology/paml/pkg-descr
+++ b/biology/paml/pkg-descr
@@ -2,7 +2,7 @@ Phylogenetic Analysis by Maximum Likelihood (PAML)
 
 PAML is a program package for phylogenetic analyses of DNA or protein
 sequences using maximum likelihood, and is maintained and distributed
-by Ziheng Yang. 
+by Ziheng Yang.
 
 Possible uses of the programs are:
 - Estimation of branch lengths in a phylogenetic tree and parameters
@@ -14,9 +14,9 @@ Possible uses of the programs are:
   constancy and independence among nucleotide or amino acid sites, rate
   constancy among lineages (the molecular clock), and homogeneity of
   evolutionary process in multiple genes;
-- Calculation of substitution rates at sites; 
+- Calculation of substitution rates at sites;
 - Reconstruction of ancestral nucleotide or amino acid sequences;
-- Simulation of nucleotide, codon, and amino acid sequence data sets; 
-- Phylogenetic tree reconstruction by maximum likelihood and Bayesian methods. 
+- Simulation of nucleotide, codon, and amino acid sequence data sets;
+- Phylogenetic tree reconstruction by maximum likelihood and Bayesian methods.
 
 WWW: http://abacus.gene.ucl.ac.uk/software/paml.html
diff --git a/biology/psi88/pkg-descr b/biology/psi88/pkg-descr
index a89ae8c55985..71acb8814918 100644
--- a/biology/psi88/pkg-descr
+++ b/biology/psi88/pkg-descr
@@ -11,6 +11,6 @@ WWW: http://zarbi.chem.yale.edu/products/psi88/index.shtml
 On-line manual is available at this web site.
 
 You can also download the source code of psi88 from
-the above site as a ``psi88.tar.gz''.  When you do ungzip and 
-untar this archive, you will obtain some documents and 
+the above site as a ``psi88.tar.gz''.  When you do ungzip and
+untar this archive, you will obtain some documents and
 the ``psi88.tar.Z'' file which is required at this port.
diff --git a/biology/pyfasta/pkg-descr b/biology/pyfasta/pkg-descr
index 471145b3e78f..4793e31e5c93 100644
--- a/biology/pyfasta/pkg-descr
+++ b/biology/pyfasta/pkg-descr
@@ -1,4 +1,4 @@
 pyfasta is a python module for fast, memory-efficient, pythonic
 access to fasta sequence files.
 
-WWW: http://bitbucket.org/brentp/biostuff/src/ 
+WWW: http://bitbucket.org/brentp/biostuff/src/
diff --git a/biology/python-nexus/pkg-descr b/biology/python-nexus/pkg-descr
index 132d2b9902cd..91c439f53f82 100644
--- a/biology/python-nexus/pkg-descr
+++ b/biology/python-nexus/pkg-descr
@@ -1,4 +1,4 @@
 python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
 reader for python.
 
-WWW: http://simon.net.nz/articles/python-nexus 
+WWW: http://simon.net.nz/articles/python-nexus
diff --git a/biology/seqan-apps/pkg-descr b/biology/seqan-apps/pkg-descr
index fbcdf62521e2..b18b0a8c5851 100644
--- a/biology/seqan-apps/pkg-descr
+++ b/biology/seqan-apps/pkg-descr
@@ -1,6 +1,6 @@
 SeqAn is an open source C++ library of efficient algorithms
 and data structures for the analysis of sequences with the
-focus on biological data. 
+focus on biological data.
 
 This port contains applications built on SeqAn and developed
 within the SeqAn project. Among them are famous read mappers
diff --git a/biology/seqan1/pkg-descr b/biology/seqan1/pkg-descr
index 5f27809a1ba8..98e902c816b6 100644
--- a/biology/seqan1/pkg-descr
+++ b/biology/seqan1/pkg-descr
@@ -4,7 +4,7 @@ focus on biological data.
 
 This port includes only the library, the apps have been
 moved to biology/seqan-apps. This is the last release of
-the version 1 API, it is highly recommended to upgrade to 
+the version 1 API, it is highly recommended to upgrade to
 biology/seqan (version 2).
 
 WWW: http://www.seqan.de/
diff --git a/biology/ssaha/pkg-descr b/biology/ssaha/pkg-descr
index 3bebc87679f1..2a683e6cda7d 100644
--- a/biology/ssaha/pkg-descr
+++ b/biology/ssaha/pkg-descr
@@ -5,7 +5,7 @@ information into a `hash table' data structure, which can then be
 searched very rapidly for matches.
 
 SSAHA: a fast search method for large DNA databases (2001).
-Ning Z, Cox AJ, Mullikin JC. Genome Res. 11: 1725-9. 
+Ning Z, Cox AJ, Mullikin JC. Genome Res. 11: 1725-9.
 PMID: 11591649
 
 WWW: http://www.sanger.ac.uk/resources/software/ssaha/
diff --git a/biology/xmolwt/pkg-descr b/biology/xmolwt/pkg-descr
index 1791858d95cc..fb799313e1d1 100644
--- a/biology/xmolwt/pkg-descr
+++ b/biology/xmolwt/pkg-descr
@@ -1,7 +1,7 @@
 Xmolwt (Motif version)/Gmolwt (GTK+ version)
 
 This program calculates the formula weight and percent of each element
-for a given chemical formula. 
+for a given chemical formula.
 
 This port is builds a GTK+ version of the program.  If you want to
 use/build a Motif version, then use Makefile.motif which is included in