diff options
author | Dmitry Marakasov <amdmi3@FreeBSD.org> | 2023-01-11 15:47:15 +0000 |
---|---|---|
committer | Dmitry Marakasov <amdmi3@FreeBSD.org> | 2023-01-11 15:58:34 +0000 |
commit | 77d68471aded6907dbbcb5ef50d557e4c69db656 (patch) | |
tree | 275194ec5b01e07c687d76180f0e180c8e7c3358 /biology | |
parent | e0d030a4faa7513ee0a1d1bb2bc6b2db1746eb8c (diff) | |
download | ports-77d68471aded6907dbbcb5ef50d557e4c69db656.tar.gz ports-77d68471aded6907dbbcb5ef50d557e4c69db656.zip |
Diffstat (limited to 'biology')
34 files changed, 34 insertions, 34 deletions
diff --git a/biology/groopm/Makefile b/biology/groopm/Makefile index f5b0bf7559c4..620ccb003fb2 100644 --- a/biology/groopm/Makefile +++ b/biology/groopm/Makefile @@ -2,7 +2,7 @@ PORTNAME= GroopM DISTVERSION= 0.3.4 PORTREVISION= 3 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI MAINTAINER= yuri@FreeBSD.org COMMENT= Metagenomic binning suite diff --git a/biology/py-Genesis-PyAPI/Makefile b/biology/py-Genesis-PyAPI/Makefile index 04b16cf9205a..71c9538fb311 100644 --- a/biology/py-Genesis-PyAPI/Makefile +++ b/biology/py-Genesis-PyAPI/Makefile @@ -1,7 +1,7 @@ PORTNAME= Genesis-PyAPI DISTVERSION= 1.2.1 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-PySCeS/Makefile b/biology/py-PySCeS/Makefile index e9648cf6acfc..c5490e644741 100644 --- a/biology/py-PySCeS/Makefile +++ b/biology/py-PySCeS/Makefile @@ -1,7 +1,7 @@ PORTNAME= PySCeS DISTVERSION= 1.0.3 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= ${PORTNAME:tl}-${DISTVERSION} diff --git a/biology/py-bcbio-gff/Makefile b/biology/py-bcbio-gff/Makefile index 3896a0f19381..8b28f7abe9bc 100644 --- a/biology/py-bcbio-gff/Makefile +++ b/biology/py-bcbio-gff/Makefile @@ -1,7 +1,7 @@ PORTNAME= bcbio-gff DISTVERSION= 0.6.9 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile index 59744dee9ef6..4f351f25152a 100644 --- a/biology/py-biom-format/Makefile +++ b/biology/py-biom-format/Makefile @@ -1,7 +1,7 @@ PORTNAME= biom-format PORTVERSION= 2.1.10 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jrm@FreeBSD.org diff --git a/biology/py-bx-python/Makefile b/biology/py-bx-python/Makefile index 9221be8cbff4..c9840382165a 100644 --- a/biology/py-bx-python/Makefile +++ b/biology/py-bx-python/Makefile @@ -1,7 +1,7 @@ PORTNAME= bx-python DISTVERSION= 0.8.13 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-crossmap/Makefile b/biology/py-crossmap/Makefile index 4a0f915b3702..5f1dff2d0915 100644 --- a/biology/py-crossmap/Makefile +++ b/biology/py-crossmap/Makefile @@ -1,7 +1,7 @@ PORTNAME= crossmap DISTVERSION= 0.5.4 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= CrossMap-${DISTVERSION} diff --git a/biology/py-cutadapt/Makefile b/biology/py-cutadapt/Makefile index af97b1bf55c2..9b03c1eb069b 100644 --- a/biology/py-cutadapt/Makefile +++ b/biology/py-cutadapt/Makefile @@ -2,7 +2,7 @@ PORTNAME= cutadapt DISTVERSION= 3.3 PORTREVISION= 1 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-deeptools/Makefile b/biology/py-deeptools/Makefile index 1cd477dded81..db4b8c185b06 100644 --- a/biology/py-deeptools/Makefile +++ b/biology/py-deeptools/Makefile @@ -1,7 +1,7 @@ PORTNAME= deepTools DISTVERSION= 3.5.1 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-deeptoolsintervals/Makefile b/biology/py-deeptoolsintervals/Makefile index d1410ed790a1..9d49af279ba5 100644 --- a/biology/py-deeptoolsintervals/Makefile +++ b/biology/py-deeptoolsintervals/Makefile @@ -1,7 +1,7 @@ PORTNAME= deeptoolsintervals DISTVERSION= 0.1.9 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-dna-features-viewer/Makefile b/biology/py-dna-features-viewer/Makefile index 9c368885c5f5..9a9c106c52e4 100644 --- a/biology/py-dna-features-viewer/Makefile +++ b/biology/py-dna-features-viewer/Makefile @@ -1,7 +1,7 @@ PORTNAME= dna-features-viewer DISTVERSION= 3.1.1 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= dna_features_viewer-${PORTVERSION} diff --git a/biology/py-dnaio/Makefile b/biology/py-dnaio/Makefile index dea08da8fb3e..94f2f0582573 100644 --- a/biology/py-dnaio/Makefile +++ b/biology/py-dnaio/Makefile @@ -1,7 +1,7 @@ PORTNAME= dnaio DISTVERSION= 0.5.1 # py-cutadapt 3.3 requires 0.5.x CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-ete3/Makefile b/biology/py-ete3/Makefile index 4a4f6eae5e67..9c6f7cedb86b 100644 --- a/biology/py-ete3/Makefile +++ b/biology/py-ete3/Makefile @@ -2,7 +2,7 @@ PORTNAME= ete3 DISTVERSION= 3.1.2 PORTREVISION= 5 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-gffutils/Makefile b/biology/py-gffutils/Makefile index c5b2a093e0e6..4de62f1e0311 100644 --- a/biology/py-gffutils/Makefile +++ b/biology/py-gffutils/Makefile @@ -1,7 +1,7 @@ PORTNAME= gffutils DISTVERSION= 0.11.0 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-goatools/Makefile b/biology/py-goatools/Makefile index 7a6efe69363d..e1b5735f72fb 100644 --- a/biology/py-goatools/Makefile +++ b/biology/py-goatools/Makefile @@ -1,7 +1,7 @@ PORTNAME= goatools DISTVERSION= 1.1.6 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-gtfparse/Makefile b/biology/py-gtfparse/Makefile index 7cfb40748b3e..e07ed2c9b569 100644 --- a/biology/py-gtfparse/Makefile +++ b/biology/py-gtfparse/Makefile @@ -1,7 +1,7 @@ PORTNAME= gtfparse DISTVERSION= 1.2.1 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-hits/Makefile b/biology/py-hits/Makefile index 78f640ffe647..ebdcb5db94b3 100644 --- a/biology/py-hits/Makefile +++ b/biology/py-hits/Makefile @@ -1,7 +1,7 @@ PORTNAME= hits PORTVERSION= 0.1 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-loompy/Makefile b/biology/py-loompy/Makefile index 5c3f7a1929e6..3695c54e2630 100644 --- a/biology/py-loompy/Makefile +++ b/biology/py-loompy/Makefile @@ -1,7 +1,7 @@ PORTNAME= loompy DISTVERSION= 3.0.7 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-mrcfile/Makefile b/biology/py-mrcfile/Makefile index a5e98434bf38..6e400b9951b2 100644 --- a/biology/py-mrcfile/Makefile +++ b/biology/py-mrcfile/Makefile @@ -1,7 +1,7 @@ PORTNAME= mrcfile DISTVERSION= 1.4.3 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-multiqc/Makefile b/biology/py-multiqc/Makefile index 4b0a00876054..3ff1eb4e220b 100644 --- a/biology/py-multiqc/Makefile +++ b/biology/py-multiqc/Makefile @@ -1,7 +1,7 @@ PORTNAME= multiqc DISTVERSION= 1.10 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-orange3-bioinformatics/Makefile b/biology/py-orange3-bioinformatics/Makefile index 7b97466250ce..a1d53866eb79 100644 --- a/biology/py-orange3-bioinformatics/Makefile +++ b/biology/py-orange3-bioinformatics/Makefile @@ -1,7 +1,7 @@ PORTNAME= orange3-bioinformatics DISTVERSION= 4.3.1 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} DISTNAME= Orange3-Bioinformatics-${DISTVERSION} diff --git a/biology/py-pandas-charm/Makefile b/biology/py-pandas-charm/Makefile index 5655d8fcd5d7..c3eb4437176c 100644 --- a/biology/py-pandas-charm/Makefile +++ b/biology/py-pandas-charm/Makefile @@ -2,7 +2,7 @@ PORTNAME= pandas-charm DISTVERSION= 0.3.0 PORTREVISION= 1 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-py2bit/Makefile b/biology/py-py2bit/Makefile index 73c9a278c2d2..f9ceab0abb3c 100644 --- a/biology/py-py2bit/Makefile +++ b/biology/py-py2bit/Makefile @@ -1,7 +1,7 @@ PORTNAME= py2bit DISTVERSION= 0.3.0 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-pybigwig/Makefile b/biology/py-pybigwig/Makefile index 39a20d944ecc..5fdfa17794c4 100644 --- a/biology/py-pybigwig/Makefile +++ b/biology/py-pybigwig/Makefile @@ -1,7 +1,7 @@ PORTNAME= pyBigWig DISTVERSION= 0.3.18 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-pyfaidx/Makefile b/biology/py-pyfaidx/Makefile index 0e43ce0af8d2..754320bf93d8 100644 --- a/biology/py-pyfaidx/Makefile +++ b/biology/py-pyfaidx/Makefile @@ -1,7 +1,7 @@ PORTNAME= pyfaidx DISTVERSION= 0.5.9.5 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-pyrodigal/Makefile b/biology/py-pyrodigal/Makefile index b152253c33f5..2beef1a2708c 100644 --- a/biology/py-pyrodigal/Makefile +++ b/biology/py-pyrodigal/Makefile @@ -1,7 +1,7 @@ PORTNAME= pyrodigal DISTVERSION= 2.0.3 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index 8e12dd618f5b..5cd1b27a49a0 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -1,7 +1,7 @@ PORTNAME= pysam DISTVERSION= 0.20.0 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-python-libsbml/Makefile b/biology/py-python-libsbml/Makefile index a6f67d462552..5d26e65f429f 100644 --- a/biology/py-python-libsbml/Makefile +++ b/biology/py-python-libsbml/Makefile @@ -1,7 +1,7 @@ PORTNAME= python-libsbml DISTVERSION= 5.19.0 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-pywgsim/Makefile b/biology/py-pywgsim/Makefile index fb3e53fb8dda..52a666286f56 100644 --- a/biology/py-pywgsim/Makefile +++ b/biology/py-pywgsim/Makefile @@ -1,7 +1,7 @@ PORTNAME= pywgsim DISTVERSION= 0.5.2 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org diff --git a/biology/py-resdk/Makefile b/biology/py-resdk/Makefile index 56f9e01cf2bb..adbf39a03844 100644 --- a/biology/py-resdk/Makefile +++ b/biology/py-resdk/Makefile @@ -1,7 +1,7 @@ PORTNAME= resdk DISTVERSION= 15.0.0 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile index d52895fa562b..c2d78cbcac7b 100644 --- a/biology/py-scikit-bio/Makefile +++ b/biology/py-scikit-bio/Makefile @@ -2,7 +2,7 @@ PORTNAME= scikit-bio PORTVERSION= 0.5.7 PORTREVISION= 2 CATEGORIES= biology education python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/py-xenaPython/Makefile b/biology/py-xenaPython/Makefile index 8eb061c52699..95375135c298 100644 --- a/biology/py-xenaPython/Makefile +++ b/biology/py-xenaPython/Makefile @@ -1,7 +1,7 @@ PORTNAME= xenaPython DISTVERSION= 1.0.14 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= yuri@FreeBSD.org diff --git a/biology/pyfasta/Makefile b/biology/pyfasta/Makefile index 935392ec2724..a5238eb14c5f 100644 --- a/biology/pyfasta/Makefile +++ b/biology/pyfasta/Makefile @@ -2,7 +2,7 @@ PORTNAME= pyfasta PORTVERSION= 0.5.2 PORTREVISION= 4 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org diff --git a/biology/python-nexus/Makefile b/biology/python-nexus/Makefile index 0c0227d59a7d..5f2a6281902a 100644 --- a/biology/python-nexus/Makefile +++ b/biology/python-nexus/Makefile @@ -1,7 +1,7 @@ PORTNAME= python-nexus PORTVERSION= 1.63 CATEGORIES= biology python -MASTER_SITES= CHEESESHOP +MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= wen@FreeBSD.org |