aboutsummaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authorDmitry Marakasov <amdmi3@FreeBSD.org>2023-01-11 15:47:15 +0000
committerDmitry Marakasov <amdmi3@FreeBSD.org>2023-01-11 15:58:34 +0000
commit77d68471aded6907dbbcb5ef50d557e4c69db656 (patch)
tree275194ec5b01e07c687d76180f0e180c8e7c3358 /biology
parente0d030a4faa7513ee0a1d1bb2bc6b2db1746eb8c (diff)
downloadports-77d68471aded6907dbbcb5ef50d557e4c69db656.tar.gz
ports-77d68471aded6907dbbcb5ef50d557e4c69db656.zip
Diffstat (limited to 'biology')
-rw-r--r--biology/groopm/Makefile2
-rw-r--r--biology/py-Genesis-PyAPI/Makefile2
-rw-r--r--biology/py-PySCeS/Makefile2
-rw-r--r--biology/py-bcbio-gff/Makefile2
-rw-r--r--biology/py-biom-format/Makefile2
-rw-r--r--biology/py-bx-python/Makefile2
-rw-r--r--biology/py-crossmap/Makefile2
-rw-r--r--biology/py-cutadapt/Makefile2
-rw-r--r--biology/py-deeptools/Makefile2
-rw-r--r--biology/py-deeptoolsintervals/Makefile2
-rw-r--r--biology/py-dna-features-viewer/Makefile2
-rw-r--r--biology/py-dnaio/Makefile2
-rw-r--r--biology/py-ete3/Makefile2
-rw-r--r--biology/py-gffutils/Makefile2
-rw-r--r--biology/py-goatools/Makefile2
-rw-r--r--biology/py-gtfparse/Makefile2
-rw-r--r--biology/py-hits/Makefile2
-rw-r--r--biology/py-loompy/Makefile2
-rw-r--r--biology/py-mrcfile/Makefile2
-rw-r--r--biology/py-multiqc/Makefile2
-rw-r--r--biology/py-orange3-bioinformatics/Makefile2
-rw-r--r--biology/py-pandas-charm/Makefile2
-rw-r--r--biology/py-py2bit/Makefile2
-rw-r--r--biology/py-pybigwig/Makefile2
-rw-r--r--biology/py-pyfaidx/Makefile2
-rw-r--r--biology/py-pyrodigal/Makefile2
-rw-r--r--biology/py-pysam/Makefile2
-rw-r--r--biology/py-python-libsbml/Makefile2
-rw-r--r--biology/py-pywgsim/Makefile2
-rw-r--r--biology/py-resdk/Makefile2
-rw-r--r--biology/py-scikit-bio/Makefile2
-rw-r--r--biology/py-xenaPython/Makefile2
-rw-r--r--biology/pyfasta/Makefile2
-rw-r--r--biology/python-nexus/Makefile2
34 files changed, 34 insertions, 34 deletions
diff --git a/biology/groopm/Makefile b/biology/groopm/Makefile
index f5b0bf7559c4..620ccb003fb2 100644
--- a/biology/groopm/Makefile
+++ b/biology/groopm/Makefile
@@ -2,7 +2,7 @@ PORTNAME= GroopM
DISTVERSION= 0.3.4
PORTREVISION= 3
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
MAINTAINER= yuri@FreeBSD.org
COMMENT= Metagenomic binning suite
diff --git a/biology/py-Genesis-PyAPI/Makefile b/biology/py-Genesis-PyAPI/Makefile
index 04b16cf9205a..71c9538fb311 100644
--- a/biology/py-Genesis-PyAPI/Makefile
+++ b/biology/py-Genesis-PyAPI/Makefile
@@ -1,7 +1,7 @@
PORTNAME= Genesis-PyAPI
DISTVERSION= 1.2.1
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-PySCeS/Makefile b/biology/py-PySCeS/Makefile
index e9648cf6acfc..c5490e644741 100644
--- a/biology/py-PySCeS/Makefile
+++ b/biology/py-PySCeS/Makefile
@@ -1,7 +1,7 @@
PORTNAME= PySCeS
DISTVERSION= 1.0.3
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= ${PORTNAME:tl}-${DISTVERSION}
diff --git a/biology/py-bcbio-gff/Makefile b/biology/py-bcbio-gff/Makefile
index 3896a0f19381..8b28f7abe9bc 100644
--- a/biology/py-bcbio-gff/Makefile
+++ b/biology/py-bcbio-gff/Makefile
@@ -1,7 +1,7 @@
PORTNAME= bcbio-gff
DISTVERSION= 0.6.9
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile
index 59744dee9ef6..4f351f25152a 100644
--- a/biology/py-biom-format/Makefile
+++ b/biology/py-biom-format/Makefile
@@ -1,7 +1,7 @@
PORTNAME= biom-format
PORTVERSION= 2.1.10
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jrm@FreeBSD.org
diff --git a/biology/py-bx-python/Makefile b/biology/py-bx-python/Makefile
index 9221be8cbff4..c9840382165a 100644
--- a/biology/py-bx-python/Makefile
+++ b/biology/py-bx-python/Makefile
@@ -1,7 +1,7 @@
PORTNAME= bx-python
DISTVERSION= 0.8.13
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-crossmap/Makefile b/biology/py-crossmap/Makefile
index 4a0f915b3702..5f1dff2d0915 100644
--- a/biology/py-crossmap/Makefile
+++ b/biology/py-crossmap/Makefile
@@ -1,7 +1,7 @@
PORTNAME= crossmap
DISTVERSION= 0.5.4
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= CrossMap-${DISTVERSION}
diff --git a/biology/py-cutadapt/Makefile b/biology/py-cutadapt/Makefile
index af97b1bf55c2..9b03c1eb069b 100644
--- a/biology/py-cutadapt/Makefile
+++ b/biology/py-cutadapt/Makefile
@@ -2,7 +2,7 @@ PORTNAME= cutadapt
DISTVERSION= 3.3
PORTREVISION= 1
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-deeptools/Makefile b/biology/py-deeptools/Makefile
index 1cd477dded81..db4b8c185b06 100644
--- a/biology/py-deeptools/Makefile
+++ b/biology/py-deeptools/Makefile
@@ -1,7 +1,7 @@
PORTNAME= deepTools
DISTVERSION= 3.5.1
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-deeptoolsintervals/Makefile b/biology/py-deeptoolsintervals/Makefile
index d1410ed790a1..9d49af279ba5 100644
--- a/biology/py-deeptoolsintervals/Makefile
+++ b/biology/py-deeptoolsintervals/Makefile
@@ -1,7 +1,7 @@
PORTNAME= deeptoolsintervals
DISTVERSION= 0.1.9
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-dna-features-viewer/Makefile b/biology/py-dna-features-viewer/Makefile
index 9c368885c5f5..9a9c106c52e4 100644
--- a/biology/py-dna-features-viewer/Makefile
+++ b/biology/py-dna-features-viewer/Makefile
@@ -1,7 +1,7 @@
PORTNAME= dna-features-viewer
DISTVERSION= 3.1.1
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= dna_features_viewer-${PORTVERSION}
diff --git a/biology/py-dnaio/Makefile b/biology/py-dnaio/Makefile
index dea08da8fb3e..94f2f0582573 100644
--- a/biology/py-dnaio/Makefile
+++ b/biology/py-dnaio/Makefile
@@ -1,7 +1,7 @@
PORTNAME= dnaio
DISTVERSION= 0.5.1 # py-cutadapt 3.3 requires 0.5.x
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-ete3/Makefile b/biology/py-ete3/Makefile
index 4a4f6eae5e67..9c6f7cedb86b 100644
--- a/biology/py-ete3/Makefile
+++ b/biology/py-ete3/Makefile
@@ -2,7 +2,7 @@ PORTNAME= ete3
DISTVERSION= 3.1.2
PORTREVISION= 5
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-gffutils/Makefile b/biology/py-gffutils/Makefile
index c5b2a093e0e6..4de62f1e0311 100644
--- a/biology/py-gffutils/Makefile
+++ b/biology/py-gffutils/Makefile
@@ -1,7 +1,7 @@
PORTNAME= gffutils
DISTVERSION= 0.11.0
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-goatools/Makefile b/biology/py-goatools/Makefile
index 7a6efe69363d..e1b5735f72fb 100644
--- a/biology/py-goatools/Makefile
+++ b/biology/py-goatools/Makefile
@@ -1,7 +1,7 @@
PORTNAME= goatools
DISTVERSION= 1.1.6
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-gtfparse/Makefile b/biology/py-gtfparse/Makefile
index 7cfb40748b3e..e07ed2c9b569 100644
--- a/biology/py-gtfparse/Makefile
+++ b/biology/py-gtfparse/Makefile
@@ -1,7 +1,7 @@
PORTNAME= gtfparse
DISTVERSION= 1.2.1
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-hits/Makefile b/biology/py-hits/Makefile
index 78f640ffe647..ebdcb5db94b3 100644
--- a/biology/py-hits/Makefile
+++ b/biology/py-hits/Makefile
@@ -1,7 +1,7 @@
PORTNAME= hits
PORTVERSION= 0.1
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-loompy/Makefile b/biology/py-loompy/Makefile
index 5c3f7a1929e6..3695c54e2630 100644
--- a/biology/py-loompy/Makefile
+++ b/biology/py-loompy/Makefile
@@ -1,7 +1,7 @@
PORTNAME= loompy
DISTVERSION= 3.0.7
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-mrcfile/Makefile b/biology/py-mrcfile/Makefile
index a5e98434bf38..6e400b9951b2 100644
--- a/biology/py-mrcfile/Makefile
+++ b/biology/py-mrcfile/Makefile
@@ -1,7 +1,7 @@
PORTNAME= mrcfile
DISTVERSION= 1.4.3
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-multiqc/Makefile b/biology/py-multiqc/Makefile
index 4b0a00876054..3ff1eb4e220b 100644
--- a/biology/py-multiqc/Makefile
+++ b/biology/py-multiqc/Makefile
@@ -1,7 +1,7 @@
PORTNAME= multiqc
DISTVERSION= 1.10
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-orange3-bioinformatics/Makefile b/biology/py-orange3-bioinformatics/Makefile
index 7b97466250ce..a1d53866eb79 100644
--- a/biology/py-orange3-bioinformatics/Makefile
+++ b/biology/py-orange3-bioinformatics/Makefile
@@ -1,7 +1,7 @@
PORTNAME= orange3-bioinformatics
DISTVERSION= 4.3.1
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
DISTNAME= Orange3-Bioinformatics-${DISTVERSION}
diff --git a/biology/py-pandas-charm/Makefile b/biology/py-pandas-charm/Makefile
index 5655d8fcd5d7..c3eb4437176c 100644
--- a/biology/py-pandas-charm/Makefile
+++ b/biology/py-pandas-charm/Makefile
@@ -2,7 +2,7 @@ PORTNAME= pandas-charm
DISTVERSION= 0.3.0
PORTREVISION= 1
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-py2bit/Makefile b/biology/py-py2bit/Makefile
index 73c9a278c2d2..f9ceab0abb3c 100644
--- a/biology/py-py2bit/Makefile
+++ b/biology/py-py2bit/Makefile
@@ -1,7 +1,7 @@
PORTNAME= py2bit
DISTVERSION= 0.3.0
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-pybigwig/Makefile b/biology/py-pybigwig/Makefile
index 39a20d944ecc..5fdfa17794c4 100644
--- a/biology/py-pybigwig/Makefile
+++ b/biology/py-pybigwig/Makefile
@@ -1,7 +1,7 @@
PORTNAME= pyBigWig
DISTVERSION= 0.3.18
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-pyfaidx/Makefile b/biology/py-pyfaidx/Makefile
index 0e43ce0af8d2..754320bf93d8 100644
--- a/biology/py-pyfaidx/Makefile
+++ b/biology/py-pyfaidx/Makefile
@@ -1,7 +1,7 @@
PORTNAME= pyfaidx
DISTVERSION= 0.5.9.5
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-pyrodigal/Makefile b/biology/py-pyrodigal/Makefile
index b152253c33f5..2beef1a2708c 100644
--- a/biology/py-pyrodigal/Makefile
+++ b/biology/py-pyrodigal/Makefile
@@ -1,7 +1,7 @@
PORTNAME= pyrodigal
DISTVERSION= 2.0.3
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile
index 8e12dd618f5b..5cd1b27a49a0 100644
--- a/biology/py-pysam/Makefile
+++ b/biology/py-pysam/Makefile
@@ -1,7 +1,7 @@
PORTNAME= pysam
DISTVERSION= 0.20.0
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-python-libsbml/Makefile b/biology/py-python-libsbml/Makefile
index a6f67d462552..5d26e65f429f 100644
--- a/biology/py-python-libsbml/Makefile
+++ b/biology/py-python-libsbml/Makefile
@@ -1,7 +1,7 @@
PORTNAME= python-libsbml
DISTVERSION= 5.19.0
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-pywgsim/Makefile b/biology/py-pywgsim/Makefile
index fb3e53fb8dda..52a666286f56 100644
--- a/biology/py-pywgsim/Makefile
+++ b/biology/py-pywgsim/Makefile
@@ -1,7 +1,7 @@
PORTNAME= pywgsim
DISTVERSION= 0.5.2
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= jwb@FreeBSD.org
diff --git a/biology/py-resdk/Makefile b/biology/py-resdk/Makefile
index 56f9e01cf2bb..adbf39a03844 100644
--- a/biology/py-resdk/Makefile
+++ b/biology/py-resdk/Makefile
@@ -1,7 +1,7 @@
PORTNAME= resdk
DISTVERSION= 15.0.0
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile
index d52895fa562b..c2d78cbcac7b 100644
--- a/biology/py-scikit-bio/Makefile
+++ b/biology/py-scikit-bio/Makefile
@@ -2,7 +2,7 @@ PORTNAME= scikit-bio
PORTVERSION= 0.5.7
PORTREVISION= 2
CATEGORIES= biology education python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/py-xenaPython/Makefile b/biology/py-xenaPython/Makefile
index 8eb061c52699..95375135c298 100644
--- a/biology/py-xenaPython/Makefile
+++ b/biology/py-xenaPython/Makefile
@@ -1,7 +1,7 @@
PORTNAME= xenaPython
DISTVERSION= 1.0.14
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= yuri@FreeBSD.org
diff --git a/biology/pyfasta/Makefile b/biology/pyfasta/Makefile
index 935392ec2724..a5238eb14c5f 100644
--- a/biology/pyfasta/Makefile
+++ b/biology/pyfasta/Makefile
@@ -2,7 +2,7 @@ PORTNAME= pyfasta
PORTVERSION= 0.5.2
PORTREVISION= 4
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= wen@FreeBSD.org
diff --git a/biology/python-nexus/Makefile b/biology/python-nexus/Makefile
index 0c0227d59a7d..5f2a6281902a 100644
--- a/biology/python-nexus/Makefile
+++ b/biology/python-nexus/Makefile
@@ -1,7 +1,7 @@
PORTNAME= python-nexus
PORTVERSION= 1.63
CATEGORIES= biology python
-MASTER_SITES= CHEESESHOP
+MASTER_SITES= PYPI
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
MAINTAINER= wen@FreeBSD.org