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authorMartin Wilke <miwi@FreeBSD.org>2008-09-30 08:54:55 +0000
committerMartin Wilke <miwi@FreeBSD.org>2008-09-30 08:54:55 +0000
commit8e93b103e5b91a016acc022b761f27e920a3b819 (patch)
treed89b49c86f3d969d574c19d0edb9ba0e0f53aeb8 /biology
parentc56f78d70accdf779be5715be7e30cef33c6236e (diff)
downloadports-8e93b103e5b91a016acc022b761f27e920a3b819.tar.gz
ports-8e93b103e5b91a016acc022b761f27e920a3b819.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/paml/Makefile12
-rw-r--r--biology/paml/distinfo6
-rw-r--r--biology/paml/pkg-plist3
3 files changed, 13 insertions, 8 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile
index 2699c6d7e92e..becaf04a06ee 100644
--- a/biology/paml/Makefile
+++ b/biology/paml/Makefile
@@ -6,19 +6,20 @@
#
PORTNAME= paml
-PORTVERSION= 3.15
+PORTVERSION= 4.1
CATEGORIES= biology
MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/
DISTNAME= ${PORTNAME}${PORTVERSION}
-MAINTAINER= ports@FreeBSD.org
+MAINTAINER= wenheping@gmail.com
COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML)
USE_GMAKE= YES
-WRKSRC= ${WRKDIR}/${DISTNAME:S/b//g}/src
+WRKSRC= ${WRKDIR}/${DISTNAME:S/.//g}/src
MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}"
BINARIES= baseml basemlg chi2 codeml evolver pamp yn00
+DOC_FILES= MCMCtreeDoc.pdf pamlDOC.pdf pamlFAQs.pdf pamlHistory.txt
do-install:
.for f in ${BINARIES}
@@ -26,8 +27,9 @@ do-install:
.endfor
.if !defined(NOPORTDOCS)
${MKDIR} ${DOCSDIR}
- ${INSTALL_DATA} ${WRKDIR}/${DISTNAME:S/b//g}/doc/pamlDOC.pdf \
- ${DOCSDIR}
+.for f in ${DOC_FILES}
+ ${INSTALL_DATA} ${WRKDIR}/${DISTNAME:S/.//g}/doc/${f} ${DOCSDIR}
+.endfor
.endif
.include <bsd.port.mk>
diff --git a/biology/paml/distinfo b/biology/paml/distinfo
index 57b0bf3978b4..94ddb605a61c 100644
--- a/biology/paml/distinfo
+++ b/biology/paml/distinfo
@@ -1,3 +1,3 @@
-MD5 (paml3.15.tar.gz) = c54ba7e15a66b57dc1140feea22e5695
-SHA256 (paml3.15.tar.gz) = f698b1d57b514e5e06e746899eae1245d098e96881e2a31c9b8fc956beb4f62a
-SIZE (paml3.15.tar.gz) = 2364043
+MD5 (paml4.1.tar.gz) = df8d8a790f5ef29e7266640d4493ec1d
+SHA256 (paml4.1.tar.gz) = 64680a56304bb3f5cd61cfc9be253fe1fe37250cb450bceaaf76b99ee08111f1
+SIZE (paml4.1.tar.gz) = 2865301
diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist
index 8126bb252983..3e71b3f39f51 100644
--- a/biology/paml/pkg-plist
+++ b/biology/paml/pkg-plist
@@ -7,4 +7,7 @@ bin/evolver
bin/pamp
bin/yn00
%%PORTDOCS%%%%DOCSDIR%%/pamlDOC.pdf
+%%PORTDOCS%%%%DOCSDIR%%/MCMCtreeDoc.pdf
+%%PORTDOCS%%%%DOCSDIR%%/pamlFAQs.pdf
+%%PORTDOCS%%%%DOCSDIR%%/pamlHistory.txt
%%PORTDOCS%%@dirrm %%DOCSDIR%%