diff options
author | Martin Wilke <miwi@FreeBSD.org> | 2015-12-11 08:48:56 +0000 |
---|---|---|
committer | Martin Wilke <miwi@FreeBSD.org> | 2015-12-11 08:48:56 +0000 |
commit | 9146c80d02a60bdeda39e1e9021c1017762cffe5 (patch) | |
tree | 5ba63c6259da8890b4e893cc1d129b7b8adfb2b0 /biology | |
parent | 822060e5fefb59b3b3c92112dd3fa6c2fb5bcdf0 (diff) | |
download | ports-9146c80d02a60bdeda39e1e9021c1017762cffe5.tar.gz ports-9146c80d02a60bdeda39e1e9021c1017762cffe5.zip |
Notes
Diffstat (limited to 'biology')
-rw-r--r-- | biology/bwa/Makefile | 4 | ||||
-rw-r--r-- | biology/cd-hit/Makefile | 4 | ||||
-rw-r--r-- | biology/cdbfasta/Makefile | 5 | ||||
-rw-r--r-- | biology/fastool/Makefile | 4 | ||||
-rw-r--r-- | biology/fasttree/Makefile | 4 | ||||
-rw-r--r-- | biology/fastx-toolkit/Makefile | 4 | ||||
-rw-r--r-- | biology/gmap/Makefile | 2 | ||||
-rw-r--r-- | biology/hmmer/Makefile | 2 | ||||
-rw-r--r-- | biology/libgtextutils/Makefile | 4 | ||||
-rw-r--r-- | biology/ncbi-blast+/Makefile | 4 | ||||
-rw-r--r-- | biology/plink/Makefile | 4 | ||||
-rw-r--r-- | biology/plinkseq/Makefile | 4 |
12 files changed, 22 insertions, 23 deletions
diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile index c2678e0f6c76..75dc506030a9 100644 --- a/biology/bwa/Makefile +++ b/biology/bwa/Makefile @@ -1,4 +1,4 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= bwa @@ -6,7 +6,7 @@ PORTVERSION= 0.7.9a CATEGORIES= biology MASTER_SITES= SF/bio-bwa/ -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Burrows-Wheeler sequence aligner LICENSE= GPLv3 diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile index b1df3d8f25b1..442298f95608 100644 --- a/biology/cd-hit/Makefile +++ b/biology/cd-hit/Makefile @@ -1,4 +1,4 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= cd-hit @@ -6,7 +6,7 @@ PORTVERSION= 4.6.4 DISTVERSIONPREFIX= V CATEGORIES= biology -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Clustering and comparing protein or nucleotide sequences LICENSE= GPLv2 diff --git a/biology/cdbfasta/Makefile b/biology/cdbfasta/Makefile index 149b07e13181..4ae474d4ae52 100644 --- a/biology/cdbfasta/Makefile +++ b/biology/cdbfasta/Makefile @@ -4,10 +4,9 @@ PORTNAME= cdbfasta PORTVERSION= 2010.07.22 CATEGORIES= biology -MASTER_SITES= http://acadix.biz/Ports/distfiles/ \ - http://personalpages.tds.net/~jwbacon/Ports/distfiles/ +MASTER_SITES= http://acadix.biz/Ports/distfiles/ -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Fast indexing and retrieval of FASTA records from flat file databases # LICENSE= unspecified diff --git a/biology/fastool/Makefile b/biology/fastool/Makefile index 0f1905040eed..0e290569743e 100644 --- a/biology/fastool/Makefile +++ b/biology/fastool/Makefile @@ -1,11 +1,11 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= fastool PORTVERSION= 0.1.4 CATEGORIES= biology -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Simple and quick FastQ and FastA tool for file reading and conversion LICENSE= BSD2CLAUSE diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile index 0fbca3f6dba6..681906a8893e 100644 --- a/biology/fasttree/Makefile +++ b/biology/fasttree/Makefile @@ -1,4 +1,4 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= FastTree @@ -7,7 +7,7 @@ CATEGORIES= biology MASTER_SITES= http://www.microbesonline.org/fasttree/ EXTRACT_SUFX= .c -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Approximately-maximum-likelihood phylogenetic trees from alignments # LICENSE= unspecified open source diff --git a/biology/fastx-toolkit/Makefile b/biology/fastx-toolkit/Makefile index b93aa5055d91..26e5da66c434 100644 --- a/biology/fastx-toolkit/Makefile +++ b/biology/fastx-toolkit/Makefile @@ -1,11 +1,11 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= fastx_toolkit PORTVERSION= 0.0.14 CATEGORIES= biology -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing LICENSE= AGPLv3 diff --git a/biology/gmap/Makefile b/biology/gmap/Makefile index 0360a1a6d8f1..9dddd40698d0 100644 --- a/biology/gmap/Makefile +++ b/biology/gmap/Makefile @@ -7,7 +7,7 @@ CATEGORIES= biology MASTER_SITES= http://research-pub.gene.com/gmap/src/ DISTNAME= ${PORTNAME}-gsnap-${PORTVERSION:C|\.|-|g} -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Genomic Mapping and Alignment Program for mRNA and EST Sequences LICENSE= GMAP diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile index ca974541a578..0f9a976131ef 100644 --- a/biology/hmmer/Makefile +++ b/biology/hmmer/Makefile @@ -8,7 +8,7 @@ CATEGORIES= biology MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \ http://selab.janelia.org/software/hmmer3/3.0/ -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Profile hidden Markov models for biological sequence analysis LICENSE= GPLv3 diff --git a/biology/libgtextutils/Makefile b/biology/libgtextutils/Makefile index 71016928f30e..1293a0186505 100644 --- a/biology/libgtextutils/Makefile +++ b/biology/libgtextutils/Makefile @@ -1,11 +1,11 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= libgtextutils PORTVERSION= 0.7 CATEGORIES= biology -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Gordon's text utilities LICENSE= AGPLv3 diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile index c2217392c020..40290aa49580 100644 --- a/biology/ncbi-blast+/Makefile +++ b/biology/ncbi-blast+/Makefile @@ -1,4 +1,4 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= blast+ @@ -10,7 +10,7 @@ MASTER_SITES= http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION PKGNAMEPREFIX= ncbi- DISTNAME= ncbi-blast-${PORTVERSION}+-src -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= NCBI implementation of Basic Local Alignment Search Tool LICENSE= Public_domain diff --git a/biology/plink/Makefile b/biology/plink/Makefile index f3ff432ea292..6d4f58deff27 100644 --- a/biology/plink/Makefile +++ b/biology/plink/Makefile @@ -1,4 +1,4 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= plink @@ -8,7 +8,7 @@ CATEGORIES= biology science MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/ DISTNAME= ${PORTNAME}-${PORTVERSION}-src -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Whole genome association analysis toolset LICENSE= GPLv2 diff --git a/biology/plinkseq/Makefile b/biology/plinkseq/Makefile index 390c49de0321..869b32ff7e7e 100644 --- a/biology/plinkseq/Makefile +++ b/biology/plinkseq/Makefile @@ -1,4 +1,4 @@ -# Created by: Jason Bacon <jwbacon@tds.net> +# Created by: Jason Bacon <bacon4000@gmail.com> # $FreeBSD$ PORTNAME= plinkseq @@ -8,7 +8,7 @@ MASTER_SITES= http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/ # Default DISTNAME is correct, so leave it alone. DISTFILES= ${PORTNAME}-src-${PORTVERSION}.tgz -MAINTAINER= jwbacon@tds.net +MAINTAINER= bacon4000@gmail.com COMMENT= Toolset for working with human genetic variation data LICENSE= GPLv2 |