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authorMartin Wilke <miwi@FreeBSD.org>2015-12-11 08:48:56 +0000
committerMartin Wilke <miwi@FreeBSD.org>2015-12-11 08:48:56 +0000
commit9146c80d02a60bdeda39e1e9021c1017762cffe5 (patch)
tree5ba63c6259da8890b4e893cc1d129b7b8adfb2b0 /biology
parent822060e5fefb59b3b3c92112dd3fa6c2fb5bcdf0 (diff)
downloadports-9146c80d02a60bdeda39e1e9021c1017762cffe5.tar.gz
ports-9146c80d02a60bdeda39e1e9021c1017762cffe5.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/bwa/Makefile4
-rw-r--r--biology/cd-hit/Makefile4
-rw-r--r--biology/cdbfasta/Makefile5
-rw-r--r--biology/fastool/Makefile4
-rw-r--r--biology/fasttree/Makefile4
-rw-r--r--biology/fastx-toolkit/Makefile4
-rw-r--r--biology/gmap/Makefile2
-rw-r--r--biology/hmmer/Makefile2
-rw-r--r--biology/libgtextutils/Makefile4
-rw-r--r--biology/ncbi-blast+/Makefile4
-rw-r--r--biology/plink/Makefile4
-rw-r--r--biology/plinkseq/Makefile4
12 files changed, 22 insertions, 23 deletions
diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile
index c2678e0f6c76..75dc506030a9 100644
--- a/biology/bwa/Makefile
+++ b/biology/bwa/Makefile
@@ -1,4 +1,4 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= bwa
@@ -6,7 +6,7 @@ PORTVERSION= 0.7.9a
CATEGORIES= biology
MASTER_SITES= SF/bio-bwa/
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Burrows-Wheeler sequence aligner
LICENSE= GPLv3
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile
index b1df3d8f25b1..442298f95608 100644
--- a/biology/cd-hit/Makefile
+++ b/biology/cd-hit/Makefile
@@ -1,4 +1,4 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= cd-hit
@@ -6,7 +6,7 @@ PORTVERSION= 4.6.4
DISTVERSIONPREFIX= V
CATEGORIES= biology
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Clustering and comparing protein or nucleotide sequences
LICENSE= GPLv2
diff --git a/biology/cdbfasta/Makefile b/biology/cdbfasta/Makefile
index 149b07e13181..4ae474d4ae52 100644
--- a/biology/cdbfasta/Makefile
+++ b/biology/cdbfasta/Makefile
@@ -4,10 +4,9 @@
PORTNAME= cdbfasta
PORTVERSION= 2010.07.22
CATEGORIES= biology
-MASTER_SITES= http://acadix.biz/Ports/distfiles/ \
- http://personalpages.tds.net/~jwbacon/Ports/distfiles/
+MASTER_SITES= http://acadix.biz/Ports/distfiles/
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Fast indexing and retrieval of FASTA records from flat file databases
# LICENSE= unspecified
diff --git a/biology/fastool/Makefile b/biology/fastool/Makefile
index 0f1905040eed..0e290569743e 100644
--- a/biology/fastool/Makefile
+++ b/biology/fastool/Makefile
@@ -1,11 +1,11 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= fastool
PORTVERSION= 0.1.4
CATEGORIES= biology
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Simple and quick FastQ and FastA tool for file reading and conversion
LICENSE= BSD2CLAUSE
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile
index 0fbca3f6dba6..681906a8893e 100644
--- a/biology/fasttree/Makefile
+++ b/biology/fasttree/Makefile
@@ -1,4 +1,4 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= FastTree
@@ -7,7 +7,7 @@ CATEGORIES= biology
MASTER_SITES= http://www.microbesonline.org/fasttree/
EXTRACT_SUFX= .c
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Approximately-maximum-likelihood phylogenetic trees from alignments
# LICENSE= unspecified open source
diff --git a/biology/fastx-toolkit/Makefile b/biology/fastx-toolkit/Makefile
index b93aa5055d91..26e5da66c434 100644
--- a/biology/fastx-toolkit/Makefile
+++ b/biology/fastx-toolkit/Makefile
@@ -1,11 +1,11 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= fastx_toolkit
PORTVERSION= 0.0.14
CATEGORIES= biology
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing
LICENSE= AGPLv3
diff --git a/biology/gmap/Makefile b/biology/gmap/Makefile
index 0360a1a6d8f1..9dddd40698d0 100644
--- a/biology/gmap/Makefile
+++ b/biology/gmap/Makefile
@@ -7,7 +7,7 @@ CATEGORIES= biology
MASTER_SITES= http://research-pub.gene.com/gmap/src/
DISTNAME= ${PORTNAME}-gsnap-${PORTVERSION:C|\.|-|g}
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Genomic Mapping and Alignment Program for mRNA and EST Sequences
LICENSE= GMAP
diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile
index ca974541a578..0f9a976131ef 100644
--- a/biology/hmmer/Makefile
+++ b/biology/hmmer/Makefile
@@ -8,7 +8,7 @@ CATEGORIES= biology
MASTER_SITES= ftp://selab.janelia.org/pub/software/hmmer3/3.0/ \
http://selab.janelia.org/software/hmmer3/3.0/
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Profile hidden Markov models for biological sequence analysis
LICENSE= GPLv3
diff --git a/biology/libgtextutils/Makefile b/biology/libgtextutils/Makefile
index 71016928f30e..1293a0186505 100644
--- a/biology/libgtextutils/Makefile
+++ b/biology/libgtextutils/Makefile
@@ -1,11 +1,11 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= libgtextutils
PORTVERSION= 0.7
CATEGORIES= biology
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Gordon's text utilities
LICENSE= AGPLv3
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index c2217392c020..40290aa49580 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -1,4 +1,4 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= blast+
@@ -10,7 +10,7 @@ MASTER_SITES= http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION
PKGNAMEPREFIX= ncbi-
DISTNAME= ncbi-blast-${PORTVERSION}+-src
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= NCBI implementation of Basic Local Alignment Search Tool
LICENSE= Public_domain
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
index f3ff432ea292..6d4f58deff27 100644
--- a/biology/plink/Makefile
+++ b/biology/plink/Makefile
@@ -1,4 +1,4 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= plink
@@ -8,7 +8,7 @@ CATEGORIES= biology science
MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/
DISTNAME= ${PORTNAME}-${PORTVERSION}-src
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Whole genome association analysis toolset
LICENSE= GPLv2
diff --git a/biology/plinkseq/Makefile b/biology/plinkseq/Makefile
index 390c49de0321..869b32ff7e7e 100644
--- a/biology/plinkseq/Makefile
+++ b/biology/plinkseq/Makefile
@@ -1,4 +1,4 @@
-# Created by: Jason Bacon <jwbacon@tds.net>
+# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= plinkseq
@@ -8,7 +8,7 @@ MASTER_SITES= http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/
# Default DISTNAME is correct, so leave it alone.
DISTFILES= ${PORTNAME}-src-${PORTVERSION}.tgz
-MAINTAINER= jwbacon@tds.net
+MAINTAINER= bacon4000@gmail.com
COMMENT= Toolset for working with human genetic variation data
LICENSE= GPLv2