aboutsummaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authorAntoine Brodin <antoine@FreeBSD.org>2020-02-23 15:25:53 +0000
committerAntoine Brodin <antoine@FreeBSD.org>2020-02-23 15:25:53 +0000
commit41a5348a3b6a9d16a7808a76f3b3935dbdb9eb49 (patch)
treedc94bc3df22b218498c473b644b9ddf5d9c9342d /biology
parentd7d7b4eebbb16e530100e9fc57ee92890921ae86 (diff)
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/graphlan/Makefile3
-rw-r--r--biology/groopm/Makefile3
-rw-r--r--biology/py-biom-format/Makefile3
3 files changed, 9 insertions, 0 deletions
diff --git a/biology/graphlan/Makefile b/biology/graphlan/Makefile
index 137f8cfdcd68..a4fe03c6ac6d 100644
--- a/biology/graphlan/Makefile
+++ b/biology/graphlan/Makefile
@@ -16,6 +16,9 @@ COMMENT= High-quality circular representations of taxonomic, phylogenetic trees
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/license.txt
+DEPRECATED= Uses deprecated version of python
+EXPIRATION_DATE= 2020-08-15
+
USES= python:2.7 shebangfix
SHEBANG_GLOB= *.py
diff --git a/biology/groopm/Makefile b/biology/groopm/Makefile
index 3c03c259116f..b6a593c6c8a7 100644
--- a/biology/groopm/Makefile
+++ b/biology/groopm/Makefile
@@ -12,6 +12,9 @@ COMMENT= Metagenomic binning suite
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE.txt
+DEPRECATED= Uses deprecated version of python
+EXPIRATION_DATE= 2020-08-15
+
RUN_DEPENDS= ${PYNUMPY} \
${PYTHON_PKGNAMEPREFIX}matplotlib>=1.1.0:math/py-matplotlib@${PY_FLAVOR} \
${PYTHON_PKGNAMEPREFIX}scipy>=0.10.1:science/py-scipy@${PY_FLAVOR} \
diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile
index 70b7b9ca6007..d81fb8a2b85a 100644
--- a/biology/py-biom-format/Makefile
+++ b/biology/py-biom-format/Makefile
@@ -12,6 +12,9 @@ COMMENT= Biological Observation Matrix (BIOM) Format Project
LICENSE= BSD3CLAUSE
+DEPRECATED= Uses deprecated version of python
+EXPIRATION_DATE= 2020-08-15
+
BUILD_DEPENDS= ${PYNUMPY}
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}click>0:devel/py-click@${PY_FLAVOR} \
${PYNUMPY} \