author: Akinori MUSHA <knu@FreeBSD.org> 2003-02-21 11:08:38 +0000
committer: Akinori MUSHA <knu@FreeBSD.org> 2003-02-21 11:08:38 +0000
commit: 57f9198bc7170af6fb3117c9c9ecdd3715a6e658 (patch)
tree: 4a5a9bdf223482c4125def32b555e0628048d584 /biology
parent: dec759ad2e5e1f2cd3efda0b40b8cdc1f2a54f8d (diff)
download: ports-57f9198bc7170af6fb3117c9c9ecdd3715a6e658.tar.gz
ports-57f9198bc7170af6fb3117c9c9ecdd3715a6e658.zip
72 files changed, 36 insertions, 36 deletions
diff --git a/biology/L-Breeder/Makefile b/biology/L-Breeder/Makefile
index 5c0d599afff5..f87750ea2128 100644
--- a/biology/L-Breeder/Makefile
+++ b/biology/L-Breeder/Makefile
@@ -13,6 +13,7 @@ DISTNAME=	LBreeder
 EXTRACT_SUFX=	.tgz
 
 MAINTAINER=	dyeske@yahoo.com
+COMMENT=	Allows you to display and breed L-system forms
 
 LIB_DEPENDS=	wx_gtk-2.2_gl.2:${PORTSDIR}/x11-toolkits/wxgtk
 
diff --git a/biology/L-Breeder/pkg-comment b/biology/L-Breeder/pkg-comment
deleted file mode 100644
index 2d2b670048c4..000000000000
--- a/biology/L-Breeder/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Allows you to display and breed L-system forms
diff --git a/biology/act/Makefile b/biology/act/Makefile
index 4c8b43fc33c0..d19ea54476f1 100644
--- a/biology/act/Makefile
+++ b/biology/act/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://www.sanger.ac.uk/Software/ACT/v1/
 DISTNAME=	act_compiled_v1
 
 MAINTAINER=	chuynh@biolateral.com.au
+COMMENT=	A DNA sequence comparison viewer based on Artemis
 
 RUN_DEPENDS=	${JAVA_COMMAND}:${PORTSDIR}/java/jdk13
 
diff --git a/biology/act/pkg-comment b/biology/act/pkg-comment
deleted file mode 100644
index 0e5bfabd633a..000000000000
--- a/biology/act/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A DNA sequence comparison viewer based on Artemis
diff --git a/biology/artemis/Makefile b/biology/artemis/Makefile
index 58af9beae029..6c8943436d34 100644
--- a/biology/artemis/Makefile
+++ b/biology/artemis/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://www.sanger.ac.uk/Software/Artemis/v4/
 DISTNAME=	artemis_compiled_v4
 
 MAINTAINER=	chuynh@biolateral.com.au
+COMMENT=	A DNA sequence viewer and annotation tool
 
 RUN_DEPENDS=	${JAVA_COMMAND}:${PORTSDIR}/java/jdk13
 
diff --git a/biology/artemis/pkg-comment b/biology/artemis/pkg-comment
deleted file mode 100644
index 26b8a15a2327..000000000000
--- a/biology/artemis/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A DNA sequence viewer and annotation tool
diff --git a/biology/avida/Makefile b/biology/avida/Makefile
index d02462e1fd4f..a4576c8c5991 100644
--- a/biology/avida/Makefile
+++ b/biology/avida/Makefile
@@ -11,6 +11,7 @@ CATEGORIES=	biology
 MASTER_SITES=	http://dllab.caltech.edu/avida/versions/
 
 MAINTAINER=	karlj000@unbc.ca
+COMMENT=	Avida is an auto-adaptive genetic system designed for ALife research
 
 WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION:C/\.[[:alnum:]]+$//}
 USE_GMAKE=	yes
diff --git a/biology/avida/pkg-comment b/biology/avida/pkg-comment
deleted file mode 100644
index 7d166f5a2674..000000000000
--- a/biology/avida/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Avida is an auto-adaptive genetic system designed for ALife research
diff --git a/biology/biojava/Makefile b/biology/biojava/Makefile
index e12d2b89f18c..4ba800438866 100644
--- a/biology/biojava/Makefile
+++ b/biology/biojava/Makefile
@@ -11,6 +11,7 @@ CATEGORIES=	biology java
 MASTER_SITES=	http://www.biojava.org/download/source/
 
 MAINTAINER=	bio@freebsd.net
+COMMENT=	Open-source java tools for processing biological data
 
 BUILD_DEPENDS=	${JAVA_COMMAND}:${PORTSDIR}/java/linux-sun-jdk12
 
diff --git a/biology/biojava/pkg-comment b/biology/biojava/pkg-comment
deleted file mode 100644
index bb2f70c7749d..000000000000
--- a/biology/biojava/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Open-source java tools for processing biological data
diff --git a/biology/chemeq/Makefile b/biology/chemeq/Makefile
index 576e4f8a137a..e45ad7fb2ca9 100644
--- a/biology/chemeq/Makefile
+++ b/biology/chemeq/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	ftp://boltz.univ-littoral.fr/pub/chemeq/
 DISTNAME=	chemeq-V110-1
 
 MAINTAINER=	rmiya@cc.hirosaki-u.ac.jp
+COMMENT=	Outputs LaTeX code for chemical reaction
 
 WRKSRC=		${WRKDIR}/${PORTNAME}
 
diff --git a/biology/chemeq/pkg-comment b/biology/chemeq/pkg-comment
deleted file mode 100644
index eda310fc4609..000000000000
--- a/biology/chemeq/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Outputs LaTeX code for chemical reaction
diff --git a/biology/crimap/Makefile b/biology/crimap/Makefile
index e5ecc9ad9857..3899c1007173 100644
--- a/biology/crimap/Makefile
+++ b/biology/crimap/Makefile
@@ -13,6 +13,7 @@ DISTNAME=	${PORTNAME}.source
 EXTRACT_SUFX=	.tar.Z
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	Creation of multilocus linkage maps
 
 NO_WRKSUBDIR=	true
 
diff --git a/biology/crimap/pkg-comment b/biology/crimap/pkg-comment
deleted file mode 100644
index 3ce04b017c81..000000000000
--- a/biology/crimap/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Creation of multilocus linkage maps
diff --git a/biology/deft/Makefile b/biology/deft/Makefile
index c8442a259b01..eae57c0484bf 100644
--- a/biology/deft/Makefile
+++ b/biology/deft/Makefile
@@ -14,6 +14,7 @@ DISTNAME=	DeFT_${PORTVERSION}
 EXTRACT_SUFX=	.tar.Z
 
 MAINTAINER=	rmiya@cc.hirosaki-u.ac.jp
+COMMENT=	Density functional molecular orbital calculation
 
 WRKSRC=		${WRKDIR}/${DISTNAME}/source
 USE_REINPLACE=	yes
diff --git a/biology/deft/pkg-comment b/biology/deft/pkg-comment
deleted file mode 100644
index 8687579a4d16..000000000000
--- a/biology/deft/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Density functional molecular orbital calculation
diff --git a/biology/dna-qc/Makefile b/biology/dna-qc/Makefile
index 0b2aea9b7e4a..4d2cde303042 100644
--- a/biology/dna-qc/Makefile
+++ b/biology/dna-qc/Makefile
@@ -13,6 +13,7 @@ DISTNAME=	qc
 EXTRACT_SUFX=	.tar.Z
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	A quality control algorithm for DNA sequencing projects
 
 NO_WRKSUBDIR=	true
 USE_REINPLACE=	yes
diff --git a/biology/dna-qc/pkg-comment b/biology/dna-qc/pkg-comment
deleted file mode 100644
index 38f03537d32c..000000000000
--- a/biology/dna-qc/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A quality control algorithm for DNA sequencing projects
diff --git a/biology/fastdnaml/Makefile b/biology/fastdnaml/Makefile
index 9a42e40174a1..250973678de2 100644
--- a/biology/fastdnaml/Makefile
+++ b/biology/fastdnaml/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://geta.life.uiuc.edu:80/~gary/programs/fastDNAml/
 DISTNAME=	fastDNAml_${PORTVERSION}
 
 MAINTAINER=	mzaki@e-mail.ne.jp
+COMMENT=	The faster variant of DNAML, makes phylogenetic trees using maximum likelihood
 
 USE_GMAKE=	yes
 do-build:
diff --git a/biology/fastdnaml/pkg-comment b/biology/fastdnaml/pkg-comment
deleted file mode 100644
index 82a9f02fa95f..000000000000
--- a/biology/fastdnaml/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-The faster variant of DNAML, makes phylogenetic trees using maximum likelihood
diff --git a/biology/flip/Makefile b/biology/flip/Makefile
index c4ce9c456b3b..4901282817b5 100644
--- a/biology/flip/Makefile
+++ b/biology/flip/Makefile
@@ -11,6 +11,7 @@ CATEGORIES=	biology
 MASTER_SITES=	ftp://megasun.bch.umontreal.ca/pub/flip/
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	Flip is  used to find/translate orfs
 
 USE_REINPLACE=	yes
 
diff --git a/biology/flip/pkg-comment b/biology/flip/pkg-comment
deleted file mode 100644
index c7bc7af7820a..000000000000
--- a/biology/flip/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Flip is  used to find/translate orfs
diff --git a/biology/gff2ps/Makefile b/biology/gff2ps/Makefile
index d87036ccc09a..52d708a2adfc 100644
--- a/biology/gff2ps/Makefile
+++ b/biology/gff2ps/Makefile
@@ -13,6 +13,7 @@ MASTER_SITES=	ftp://www1.imim.es/pub/gff_tools/gff2ps/ \
 DISTFILES=	${PORTNAME}_v${PORTVERSION}.gz ${GFF2PS_MAN}.gz
 
 MAINTAINER=	chuynh@biolateral.com.au
+COMMENT=	Converts gff-formated genomic data-sets to PostScript
 
 RUN_DEPENDS=	gawk:${PORTSDIR}/lang/gawk \
 		bash:${PORTSDIR}/shells/bash2
diff --git a/biology/gff2ps/pkg-comment b/biology/gff2ps/pkg-comment
deleted file mode 100644
index 6b164c3b4a56..000000000000
--- a/biology/gff2ps/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Converts gff-formated genomic data-sets to PostScript
diff --git a/biology/gperiodic/Makefile b/biology/gperiodic/Makefile
index b0f21fdf50b6..2d9f9ee19540 100644
--- a/biology/gperiodic/Makefile
+++ b/biology/gperiodic/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	ftp://ftp.seul.org/pub/gperiodic/ \
 		http://www.unixpages.org/distfiles/
 
 MAINTAINER=	chris@unixpages.org
+COMMENT=	Displays a periodic table of the elements
 
 USE_X_PREFIX=	yes
 USE_GNOMENG=	yes
diff --git a/biology/gperiodic/pkg-comment b/biology/gperiodic/pkg-comment
deleted file mode 100644
index 40bed32d9565..000000000000
--- a/biology/gperiodic/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Displays a periodic table of the elements
diff --git a/biology/grappa/Makefile b/biology/grappa/Makefile
index f0952d3a0e6e..f957b7aaef27 100644
--- a/biology/grappa/Makefile
+++ b/biology/grappa/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://www.cs.unm.edu/~moret/
 DISTNAME=	GRAPPA-1.03
 
 MAINTAINER=	dbader@eece.unm.edu
+COMMENT=	Genome Rearrangements Analysis and Phylogeny Software
 
 BUILD_DEPENDS=	${LOCALBASE}/lib/libconcorde.a:${PORTSDIR}/math/concorde
 
diff --git a/biology/grappa/pkg-comment b/biology/grappa/pkg-comment
deleted file mode 100644
index 42cf72c3f8ed..000000000000
--- a/biology/grappa/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Genome Rearrangements Analysis and Phylogeny Software
diff --git a/biology/kinemage/Makefile b/biology/kinemage/Makefile
index 4dbeaae0914c..a81f9ea02003 100644
--- a/biology/kinemage/Makefile
+++ b/biology/kinemage/Makefile
@@ -18,6 +18,7 @@ MASTER_SITE_SUBDIR=	will
 DISTNAME=	mage-001120
 
 MAINTAINER=	jeremy@external.org
+COMMENT=	A molecular visualization program with special functions
 
 WRKSRC=		${WRKDIR}/${DISTNAME}
 
diff --git a/biology/kinemage/pkg-comment b/biology/kinemage/pkg-comment
deleted file mode 100644
index 2558c26bd888..000000000000
--- a/biology/kinemage/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A molecular visualization program with special functions
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index 186d7725a315..3a5828334787 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -14,6 +14,7 @@ EXTRACT_SUFX=	.tar.Z
 EXTRACT_ONLY=	${PORTNAME}${PORTVERSION}.tar.Z
 
 MAINTAINER=	rmiya@cc.hirosaki-u.ac.jp
+COMMENT=	Display molecular orbitals and electron densities in 2D and 3D
 
 USE_XLIB=	yes
 
diff --git a/biology/molden/pkg-comment b/biology/molden/pkg-comment
deleted file mode 100644
index 669aeabf1dc9..000000000000
--- a/biology/molden/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Display molecular orbitals and electron densities in 2D and 3D
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index b631b19479db..87cc42fe763f 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -17,6 +17,7 @@ PATCHFILES=	mopac7-linux.diff.Z
 PATCH_DIST_STRIP=	-p1
 
 MAINTAINER=	rmiya@cc.hirosaki-u.ac.jp
+COMMENT=	Semi-empirical (MNDO, etc.) molecular orbital calculation
 
 USE_GMAKE=	yes
 
diff --git a/biology/mopac/pkg-comment b/biology/mopac/pkg-comment
deleted file mode 100644
index 321357a44a72..000000000000
--- a/biology/mopac/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Semi-empirical (MNDO, etc.) molecular orbital calculation
diff --git a/biology/nab/Makefile b/biology/nab/Makefile
index e57708d2bfac..ac14470a54fb 100644
--- a/biology/nab/Makefile
+++ b/biology/nab/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	ftp://ftp.scripps.edu/pub/case/ \
 		http://www.scripps.edu/case/
 
 MAINTAINER=	bdodson@scms.utmb.edu
+COMMENT=	This is nab (nucleic acid builder), a language for macromolecules
 
 MAKE_ENV+=	NABHOME=${WRKSRC} ARCH= PATH=${WRKSRC}/bin:${PATH}
 
diff --git a/biology/nab/pkg-comment b/biology/nab/pkg-comment
deleted file mode 100644
index 98f624d1cacd..000000000000
--- a/biology/nab/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-This is nab (nucleic acid builder), a language for macromolecules
diff --git a/biology/ncbi-toolkit/Makefile b/biology/ncbi-toolkit/Makefile
index 074eac936b91..4a12fd525b78 100644
--- a/biology/ncbi-toolkit/Makefile
+++ b/biology/ncbi-toolkit/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g
 DISTNAME=	ncbi
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
 
 USE_MOTIF=	yes
 USE_REINPLACE=	yes
diff --git a/biology/ncbi-toolkit/pkg-comment b/biology/ncbi-toolkit/pkg-comment
deleted file mode 100644
index 3afdf3b4fd80..000000000000
--- a/biology/ncbi-toolkit/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
diff --git a/biology/nclever/Makefile b/biology/nclever/Makefile
index e512c5e14bda..3e6196ce8f7e 100644
--- a/biology/nclever/Makefile
+++ b/biology/nclever/Makefile
@@ -13,6 +13,7 @@ DISTNAME=	${PORTNAME}${PORTVERSION}
 EXTRACT_SUFX=	.tar.Z
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	NClever is a character-based version of NCBI's Entrez program
 
 BUILD_DEPENDS=	${LOCALBASE}/lib/ncbi/libncbi.a:${PORTSDIR}/biology/ncbi-toolkit
 
diff --git a/biology/nclever/pkg-comment b/biology/nclever/pkg-comment
deleted file mode 100644
index bcc0475ce55a..000000000000
--- a/biology/nclever/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-NClever is a character-based version of NCBI's Entrez program
diff --git a/biology/ortep3/Makefile b/biology/ortep3/Makefile
index 971f22cf7737..79a591542844 100644
--- a/biology/ortep3/Makefile
+++ b/biology/ortep3/Makefile
@@ -15,6 +15,7 @@ DISTFILES=	ortep.tar.Z ortep.f
 EXTRACT_ONLY=	ortep.tar.Z
 
 MAINTAINER=	rmiya@cc.hirosaki-u.ac.jp
+COMMENT=	The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
 
 .if defined(WITH_PGPLOT)
 LIB_DEPENDS=	pgplot.5:${PORTSDIR}/graphics/pgplot
diff --git a/biology/ortep3/pkg-comment b/biology/ortep3/pkg-comment
deleted file mode 100644
index d3fe47aa3676..000000000000
--- a/biology/ortep3/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
diff --git a/biology/p5-AcePerl/Makefile b/biology/p5-AcePerl/Makefile
index 60a3b56c8f23..115de70a1325 100644
--- a/biology/p5-AcePerl/Makefile
+++ b/biology/p5-AcePerl/Makefile
@@ -13,6 +13,7 @@ MASTER_SITE_SUBDIR=	Ace
 PKGNAMEPREFIX=	p5-
 
 MAINTAINER=	bio@freebsd.net
+COMMENT=	Perl5 interface to the ACEDB genome database system
 
 BUILD_DEPENDS=	${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Digest/MD5.pm:${PORTSDIR}/security/p5-Digest-MD5
 RUN_DEPENDS=	${BUILD_DEPENDS}
diff --git a/biology/p5-AcePerl/pkg-comment b/biology/p5-AcePerl/pkg-comment
deleted file mode 100644
index a93e81fd7380..000000000000
--- a/biology/p5-AcePerl/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Perl5 interface to the ACEDB genome database system
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile
index 2552545948f5..d7a4f2d4e827 100644
--- a/biology/phylip/Makefile
+++ b/biology/phylip/Makefile
@@ -14,6 +14,7 @@ EXTRACT_SUFX=	.tar.Z
 DIST_SUBDIR=	${PORTNAME}-${PORTVERSION}
 
 MAINTAINER=	dbader@eece.unm.edu
+COMMENT=	A Phylogeny Inference Package
 
 USE_XLIB=	yes
 BUILD_WRKSRC=	${WRKSRC}/src
diff --git a/biology/phylip/pkg-comment b/biology/phylip/pkg-comment
deleted file mode 100644
index b6a5c95a716e..000000000000
--- a/biology/phylip/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A Phylogeny Inference Package
diff --git a/biology/platon/Makefile b/biology/platon/Makefile
index f9661254e5c6..868e3a8973c0 100644
--- a/biology/platon/Makefile
+++ b/biology/platon/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	ftp://xraysoft.chem.uu.nl/pub/unix/
 DISTNAME=	platon
 
 MAINTAINER=	rmiya@cc.hirosaki-u.ac.jp
+COMMENT=	Tool for viewing molecular/crystallographic structures
 
 # PLATON may be used free of charge by the academic community under
 # the condition that it is not redistributed for a current & fresh copy.
diff --git a/biology/platon/pkg-comment b/biology/platon/pkg-comment
deleted file mode 100644
index 891a8693e1d8..000000000000
--- a/biology/platon/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Tool for viewing molecular/crystallographic structures
diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile
index ecbedd3b61d0..9f425001adb7 100644
--- a/biology/povchem/Makefile
+++ b/biology/povchem/Makefile
@@ -15,6 +15,7 @@ DISTFILES=	povchem.c \
 		periodic.tab
 
 MAINTAINER=	frankch@waru.life.nthu.edu.tw
+COMMENT=	Simple yet powerful tool to generate POV from a PDB file
 
 NO_WRKSUBDIR=	yes
 USE_REINPLACE=	yes
diff --git a/biology/povchem/pkg-comment b/biology/povchem/pkg-comment
deleted file mode 100644
index c0d5024801f5..000000000000
--- a/biology/povchem/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Simple yet powerful tool to generate POV from a PDB file
diff --git a/biology/primer3/Makefile b/biology/primer3/Makefile
index 462fe8a50067..fbfce88afc27 100644
--- a/biology/primer3/Makefile
+++ b/biology/primer3/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://www-genome.wi.mit.edu/ftp/distribution/software/
 DISTNAME=	${PORTNAME}_${PORTVERSION:S/./_/}_test
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	Primer3 helps to choose primers for PCR reactions
 
 USE_REINPLACE=	yes
 WRKSRC=		${WRKDIR}/${DISTNAME}/src
diff --git a/biology/primer3/pkg-comment b/biology/primer3/pkg-comment
deleted file mode 100644
index cdae8a3feb94..000000000000
--- a/biology/primer3/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Primer3 helps to choose primers for PCR reactions
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index 52aef691e734..6824790443cd 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -14,6 +14,7 @@ DISTNAME=	${PORTNAME}
 EXTRACT_SUFX=	.tar.Z
 
 MAINTAINER=	rmiya@cc.hirosaki-u.ac.jp
+COMMENT=	Plotting wavefunctions (molecular orbitals) in 3D
 
 pre-patch:
 	${MV} ${WRKSRC}/src/makefile ${WRKSRC}/src/Makefile
diff --git a/biology/psi88/pkg-comment b/biology/psi88/pkg-comment
deleted file mode 100644
index 00fcd0b7c031..000000000000
--- a/biology/psi88/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Plotting wavefunctions (molecular orbitals) in 3D
diff --git a/biology/seqio/Makefile b/biology/seqio/Makefile
index cef43ebbeef1..412e2950c0ca 100644
--- a/biology/seqio/Makefile
+++ b/biology/seqio/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://www.cs.ucdavis.edu/~gusfield/
 DISTNAME=	${PORTNAME}
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	A set of C functions which can read/write biological sequence files
 
 WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
 
diff --git a/biology/seqio/pkg-comment b/biology/seqio/pkg-comment
deleted file mode 100644
index ae2200e5e086..000000000000
--- a/biology/seqio/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A set of C functions which can read/write biological sequence files
diff --git a/biology/sim4/Makefile b/biology/sim4/Makefile
index d7cb05e7c4a3..046ab2cdb24c 100644
--- a/biology/sim4/Makefile
+++ b/biology/sim4/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://globin.cse.psu.edu/ftp/dist/sim4/
 DISTNAME=	${PORTNAME}.${PORTVERSION:S/./-/g}
 
 MAINTAINER=	bio@freebsd.net
+COMMENT=	An algorithm for aligning expressed DNA with genomic sequences
 
 WRKSRC=		${WRKDIR}/sim4.${PORTVERSION:S/./-/g}
 
diff --git a/biology/sim4/pkg-comment b/biology/sim4/pkg-comment
deleted file mode 100644
index 7e50b5e0e13f..000000000000
--- a/biology/sim4/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-An algorithm for aligning expressed DNA with genomic sequences
diff --git a/biology/spdbv/Makefile b/biology/spdbv/Makefile
index e7926ec15b7d..7e5934314d63 100644
--- a/biology/spdbv/Makefile
+++ b/biology/spdbv/Makefile
@@ -20,6 +20,7 @@ MASTER_SITES=	http://au.expasy.org/spdbv/program/ \
 DISTNAME=	${PORTNAME}${PORTVERSION:C/\.//}-Linux
 
 MAINTAINER=	chuynh@biolateral.com.au
+COMMENT=	Deep View Swiss-PdbViewer is a Protein viewer and analysis tool
 
 RUN_DEPENDS=	${LINUXBASE}${X11BASE}/lib/libMesaGL.so.3:${PORTSDIR}/graphics/linux_mesa3 \
 		${LINUXBASE}${X11BASE}/lib/libXm.so.2:${PORTSDIR}/x11-toolkits/linux-openmotif
diff --git a/biology/spdbv/pkg-comment b/biology/spdbv/pkg-comment
deleted file mode 100644
index 5f9f33b5bb79..000000000000
--- a/biology/spdbv/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Deep View Swiss-PdbViewer is a Protein viewer and analysis tool
diff --git a/biology/tRNAscan-SE/Makefile b/biology/tRNAscan-SE/Makefile
index a5f9366e3101..ba593eb3f94a 100644
--- a/biology/tRNAscan-SE/Makefile
+++ b/biology/tRNAscan-SE/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	ftp://ftp.genetics.wustl.edu/pub/eddy/software/
 EXTRACT_SUFX=	.tar.Z
 
 MAINTAINER=	chuynh@biolateral.com.au
+COMMENT=	An improved tool for transfer RNA detection
 
 MAN1=		tRNAscan-SE.1
 
diff --git a/biology/tRNAscan-SE/pkg-comment b/biology/tRNAscan-SE/pkg-comment
deleted file mode 100644
index 92cdd3eff0e5..000000000000
--- a/biology/tRNAscan-SE/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-An improved tool for transfer RNA detection
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index 1c2a97a6a110..1d47724de65a 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -13,6 +13,7 @@ MASTER_SITES=	ftp://dasher.wustl.edu/pub/
 DISTNAME=	${PORTNAME}
 
 MAINTAINER=	gjohnson@srrc.ars.usda.gov
+COMMENT=	A general purpose molecular modelling package
 
 MAKE_ENV+=	HAVE_G2C=yes INSTALL_PROGRAM="${INSTALL_PROGRAM}"
 
diff --git a/biology/tinker/pkg-comment b/biology/tinker/pkg-comment
deleted file mode 100644
index 934f74e4dcbb..000000000000
--- a/biology/tinker/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A general purpose molecular modelling package
diff --git a/biology/treepuzzle/Makefile b/biology/treepuzzle/Makefile
index 5da85ab92905..534358040ae8 100644
--- a/biology/treepuzzle/Makefile
+++ b/biology/treepuzzle/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://www.tree-puzzle.de/
 DISTNAME=	tree-puzzle-${PORTVERSION}
 
 MAINTAINER=	jan.lentfer@web.de
+COMMENT=	Maximum likelihood phylogeny reconstruction using quartets
 
 GNU_CONFIGURE=	yes
 CONFIGURE_TARGET=	--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
diff --git a/biology/treepuzzle/pkg-comment b/biology/treepuzzle/pkg-comment
deleted file mode 100644
index f74e1b28b924..000000000000
--- a/biology/treepuzzle/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Maximum likelihood phylogeny reconstruction using quartets
diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile
index 37011d8c9df7..1043b6b28d7a 100644
--- a/biology/treeviewx/Makefile
+++ b/biology/treeviewx/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
 DISTNAME=	tv-${PORTVERSION}
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	A phylogenetic tree viewer
 
 LIB_DEPENDS=	wx_gtk-2.2.2:${PORTSDIR}/x11-toolkits/wxgtk
 
diff --git a/biology/treeviewx/pkg-comment b/biology/treeviewx/pkg-comment
deleted file mode 100644
index 727dcca534d0..000000000000
--- a/biology/treeviewx/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A phylogenetic tree viewer
diff --git a/biology/wise/Makefile b/biology/wise/Makefile
index f68cd72ee63a..426eb7c161ff 100644
--- a/biology/wise/Makefile
+++ b/biology/wise/Makefile
@@ -12,6 +12,7 @@ MASTER_SITES=	ftp://ftp.sanger.ac.uk/pub/birney/wise2/
 DISTNAME=	${PORTNAME}${PORTVERSION}
 
 MAINTAINER=	tonym@biolateral.com.au
+COMMENT=	Intelligent algorithms for DNA searches
 
 WRKTOP=		${WRKDIR}/${DISTNAME}
 WRKSRC=		${WRKTOP}/src
diff --git a/biology/wise/pkg-comment b/biology/wise/pkg-comment
deleted file mode 100644
index 0e362eb59dd9..000000000000
--- a/biology/wise/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Intelligent algorithms for DNA searches
diff --git a/biology/xmolwt/Makefile b/biology/xmolwt/Makefile
index 9e7d43481633..097e9d2e673d 100644
--- a/biology/xmolwt/Makefile
+++ b/biology/xmolwt/Makefile
@@ -10,6 +10,7 @@ CATEGORIES=	biology
 MASTER_SITES=	http://www.st.hirosaki-u.ac.jp/~rmiya/xmolwt/
 
 MAINTAINER=	rmiya@cc.hirosaki-u.ac.jp
+COMMENT=	Calculate formula weight and percent of each element for a given formula
 
 WRKSRC=		${WRKDIR}/${DISTNAME}
 MAKEFILE=	Makefile.gtk
diff --git a/biology/xmolwt/pkg-comment b/biology/xmolwt/pkg-comment
deleted file mode 100644
index 248528d92f95..000000000000
--- a/biology/xmolwt/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Calculate formula weight and percent of each element for a given formula
author	Akinori MUSHA <knu@FreeBSD.org>	2003-02-21 11:08:38 +0000
committer	Akinori MUSHA <knu@FreeBSD.org>	2003-02-21 11:08:38 +0000
commit	57f9198bc7170af6fb3117c9c9ecdd3715a6e658 (patch)
tree	4a5a9bdf223482c4125def32b555e0628048d584 /biology
parent	dec759ad2e5e1f2cd3efda0b40b8cdc1f2a54f8d (diff)
download	ports-57f9198bc7170af6fb3117c9c9ecdd3715a6e658.tar.gz ports-57f9198bc7170af6fb3117c9c9ecdd3715a6e658.zip