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authorEdwin Groothuis <edwin@FreeBSD.org>2003-01-16 14:22:59 +0000
committerEdwin Groothuis <edwin@FreeBSD.org>2003-01-16 14:22:59 +0000
commitb7eafb33b6c3d8357836ec53af0f50bf4dd83904 (patch)
tree320877602194dbc309ba8773061a698a447ee2a0 /biology
parent9dff5454959f9b19ff09ed750d456ef22926b181 (diff)
downloadports-b7eafb33b6c3d8357836ec53af0f50bf4dd83904.tar.gz
ports-b7eafb33b6c3d8357836ec53af0f50bf4dd83904.zip
Notes
Diffstat (limited to 'biology')
-rw-r--r--biology/Makefile1
-rw-r--r--biology/act/Makefile33
-rw-r--r--biology/act/distinfo1
-rw-r--r--biology/act/pkg-comment1
-rw-r--r--biology/act/pkg-descr12
-rw-r--r--biology/act/pkg-plist983
6 files changed, 1031 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile
index 9a4012bc0a77..c93eaebed2ef 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -2,6 +2,7 @@
#
SUBDIR += L-Breeder
+ SUBDIR += act
SUBDIR += artemis
SUBDIR += avida
SUBDIR += babel
diff --git a/biology/act/Makefile b/biology/act/Makefile
new file mode 100644
index 000000000000..4c8b43fc33c0
--- /dev/null
+++ b/biology/act/Makefile
@@ -0,0 +1,33 @@
+# New ports collection makefile for: artemis
+# Date created: 11 Mar 2002
+# Whom: chuynh@bilateral.com.au
+#
+# $FreeBSD$
+#
+
+PORTNAME= act
+PORTVERSION= 1.0
+CATEGORIES= biology
+MASTER_SITES= http://www.sanger.ac.uk/Software/ACT/v1/
+DISTNAME= act_compiled_v1
+
+MAINTAINER= chuynh@biolateral.com.au
+
+RUN_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/jdk13
+
+WRKSRC= ${WRKDIR}/${PORTNAME}
+
+JDK_VERSION= 1.3.1
+JDK_DIR= ${PREFIX}/jdk${JDK_VERSION}
+JAVA_COMMAND= ${JDK_DIR}/bin/java
+
+NO_BUILD= yes
+
+do-install:
+ @${MKDIR} ${PREFIX}/${PORTNAME}-${PORTVERSION}
+ @${TAR} -C ${WRKSRC} -cf- . | ${TAR} -C ${PREFIX}/${PORTNAME}-${PORTVERSION} -xpf-
+ @${LN} -s ${PREFIX}/${PORTNAME}-${PORTVERSION}/act ${PREFIX}/bin/act
+
+PLIST_SUB= PORTVERSION="${PORTVERSION}"
+
+.include <bsd.port.mk>
diff --git a/biology/act/distinfo b/biology/act/distinfo
new file mode 100644
index 000000000000..48b31986c4a9
--- /dev/null
+++ b/biology/act/distinfo
@@ -0,0 +1 @@
+MD5 (act_compiled_v1.tar.gz) = 30e263c6507007d866a24b59c0767d77
diff --git a/biology/act/pkg-comment b/biology/act/pkg-comment
new file mode 100644
index 000000000000..0e5bfabd633a
--- /dev/null
+++ b/biology/act/pkg-comment
@@ -0,0 +1 @@
+A DNA sequence comparison viewer based on Artemis
diff --git a/biology/act/pkg-descr b/biology/act/pkg-descr
new file mode 100644
index 000000000000..f610f9519091
--- /dev/null
+++ b/biology/act/pkg-descr
@@ -0,0 +1,12 @@
+ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer based on
+Artemis. In common with Artemis, ACT is written in Java and runs on UNIX,
+GNU/Linux, Macintosh and MS Windows systems. It can read complete EMBL
+and GENBANK entries or sequence in FASTA or raw format. Extra sequence
+features can be in EMBL, GENBANK or GFF format. ACT is distributed under the
+same license as Artemis.
+
+The sequence comparison displayed by ACT is usually the result of a blastn or
+tblastx search that has been processed by MSPcrunch. MSPcrunch must be run
+with the -d flag for the output to be usable by ACT.
+
+WWW: http://www.sanger.ac.uk/Software/ACT/manual
diff --git a/biology/act/pkg-plist b/biology/act/pkg-plist
new file mode 100644
index 000000000000..46e5a821c9db
--- /dev/null
+++ b/biology/act/pkg-plist
@@ -0,0 +1,983 @@
+act-1.0/CVS/Root
+act-1.0/CVS/Repository
+act-1.0/CVS/Entries
+act-1.0/.cvsignore
+act-1.0/AppGlobal.java
+act-1.0/Dad.java
+act-1.0/Makefile
+act-1.0/act
+act-1.0/META-INF/CVS/Root
+act-1.0/META-INF/CVS/Repository
+act-1.0/META-INF/CVS/Entries
+act-1.0/META-INF/MANIFEST.MF
+act-1.0/uk/CVS/Root
+act-1.0/uk/CVS/Repository
+act-1.0/uk/CVS/Entries
+act-1.0/uk/ac/CVS/Root
+act-1.0/uk/ac/CVS/Repository
+act-1.0/uk/ac/CVS/Entries
+act-1.0/uk/ac/sanger/CVS/Root
+act-1.0/uk/ac/sanger/CVS/Repository
+act-1.0/uk/ac/sanger/CVS/Entries
+act-1.0/uk/ac/sanger/pathogens/CVS/Root
+act-1.0/uk/ac/sanger/pathogens/CVS/Repository
+act-1.0/uk/ac/sanger/pathogens/CVS/Entries
+act-1.0/uk/ac/sanger/pathogens/Document.java
+act-1.0/uk/ac/sanger/pathogens/FastVector.java
+act-1.0/uk/ac/sanger/pathogens/FileDocument.java
+act-1.0/uk/ac/sanger/pathogens/FileProgressDocument.java
+act-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.java
+act-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.java
+act-1.0/uk/ac/sanger/pathogens/OutOfRangeException.java
+act-1.0/uk/ac/sanger/pathogens/ProgressInputStream.java
+act-1.0/uk/ac/sanger/pathogens/ReadOnlyException.java
+act-1.0/uk/ac/sanger/pathogens/StringVector.java
+act-1.0/uk/ac/sanger/pathogens/URLDocument.java
+act-1.0/uk/ac/sanger/pathogens/embl/CVS/Root
+act-1.0/uk/ac/sanger/pathogens/embl/CVS/Repository
+act-1.0/uk/ac/sanger/pathogens/embl/CVS/Entries
+act-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.java
+act-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/CorbaEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/CorbaFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/CorbaSequence.java
+act-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.java
+act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.java
+act-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.java
+act-1.0/uk/ac/sanger/pathogens/embl/Entry.java
+act-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.java
+act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.java
+act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/EnsemblCorbaSequence.java
+act-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.java
+act-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.java
+act-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.java
+act-1.0/uk/ac/sanger/pathogens/embl/Feature.java
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.java
+act-1.0/uk/ac/sanger/pathogens/embl/Key.java
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.java
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.java
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.java
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.java
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.java
+act-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.java
+act-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.java
+act-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.java
+act-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.java
+act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.java
+act-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.java
+act-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.java
+act-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.java
+act-1.0/uk/ac/sanger/pathogens/embl/KeyVector.java
+act-1.0/uk/ac/sanger/pathogens/embl/LineGroup.java
+act-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.java
+act-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.java
+act-1.0/uk/ac/sanger/pathogens/embl/Location.java
+act-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.java
+act-1.0/uk/ac/sanger/pathogens/embl/Qualifier.java
+act-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.java
+act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.java
+act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.java
+act-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.java
+act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.java
+act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.java
+act-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.java
+act-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/PushBackException.java
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.java
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.java
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.java
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.java
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.java
+act-1.0/uk/ac/sanger/pathogens/embl/RWCorbaEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/RWCorbaFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/Range.java
+act-1.0/uk/ac/sanger/pathogens/embl/RangeVector.java
+act-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.java
+act-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.java
+act-1.0/uk/ac/sanger/pathogens/embl/ReadOnlyEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/Sequence.java
+act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.java
+act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.java
+act-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.java
+act-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.java
+act-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.java
+act-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.java
+act-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.java
+act-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.java
+act-1.0/uk/ac/sanger/pathogens/embl/embl.example
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoVector.class
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfoException.class
+act-1.0/uk/ac/sanger/pathogens/embl/EntryInformation.class
+act-1.0/uk/ac/sanger/pathogens/embl/EntryInformationException.class
+act-1.0/uk/ac/sanger/pathogens/embl/ReadFormatException.class
+act-1.0/uk/ac/sanger/pathogens/embl/InvalidRelationException.class
+act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryFactory.class
+act-1.0/uk/ac/sanger/pathogens/embl/SimpleEntryInformation.class
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierInfo.class
+act-1.0/uk/ac/sanger/pathogens/embl/Key.class
+act-1.0/uk/ac/sanger/pathogens/embl/KeyVector.class
+act-1.0/uk/ac/sanger/pathogens/embl/Qualifier.class
+act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntry.class
+act-1.0/uk/ac/sanger/pathogens/embl/Entry.class
+act-1.0/uk/ac/sanger/pathogens/embl/EmblDocumentEntry.class
+act-1.0/uk/ac/sanger/pathogens/embl/PublicDBDocumentEntry.class
+act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry.class
+act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentEntry$1.class
+act-1.0/uk/ac/sanger/pathogens/embl/LineGroup.class
+act-1.0/uk/ac/sanger/pathogens/embl/EMBLObject.class
+act-1.0/uk/ac/sanger/pathogens/embl/LinePushBackReader.class
+act-1.0/uk/ac/sanger/pathogens/embl/PushBackException.class
+act-1.0/uk/ac/sanger/pathogens/embl/StreamSequenceFactory.class
+act-1.0/uk/ac/sanger/pathogens/embl/StreamSequence.class
+act-1.0/uk/ac/sanger/pathogens/embl/Sequence.class
+act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/PublicDBStreamFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/SimpleDocumentFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/DocumentFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/Feature.class
+act-1.0/uk/ac/sanger/pathogens/embl/StreamFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/ComparableFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierParseException.class
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureHeader.class
+act-1.0/uk/ac/sanger/pathogens/embl/EmblMisc.class
+act-1.0/uk/ac/sanger/pathogens/embl/MiscLineGroup.class
+act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/GFFStreamFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchStreamFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/GenbankMisc.class
+act-1.0/uk/ac/sanger/pathogens/embl/GFFMisc.class
+act-1.0/uk/ac/sanger/pathogens/embl/GFFDocumentEntry.class
+act-1.0/uk/ac/sanger/pathogens/embl/GenbankDocumentEntry.class
+act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchDocumentEntry.class
+act-1.0/uk/ac/sanger/pathogens/embl/InvalidKeyException.class
+act-1.0/uk/ac/sanger/pathogens/embl/InvalidQualifierException.class
+act-1.0/uk/ac/sanger/pathogens/embl/Range.class
+act-1.0/uk/ac/sanger/pathogens/embl/EmblStreamSequence.class
+act-1.0/uk/ac/sanger/pathogens/embl/RangeVector.class
+act-1.0/uk/ac/sanger/pathogens/embl/Location.class
+act-1.0/uk/ac/sanger/pathogens/embl/LocationLexer.class
+act-1.0/uk/ac/sanger/pathogens/embl/LocationLexer$TokenEnumeration.class
+act-1.0/uk/ac/sanger/pathogens/embl/LocationParseException.class
+act-1.0/uk/ac/sanger/pathogens/embl/QualifierVector.class
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureEnumeration.class
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureVector.class
+act-1.0/uk/ac/sanger/pathogens/embl/GenbankStreamSequence.class
+act-1.0/uk/ac/sanger/pathogens/embl/LineGroupVector.class
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureTable.class
+act-1.0/uk/ac/sanger/pathogens/embl/RawStreamSequence.class
+act-1.0/uk/ac/sanger/pathogens/embl/FastaStreamSequence.class
+act-1.0/uk/ac/sanger/pathogens/embl/StreamFeatureTable.class
+act-1.0/uk/ac/sanger/pathogens/embl/DocumentEntryAutosaveThread.class
+act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNode.class
+act-1.0/uk/ac/sanger/pathogens/embl/StreamQualifier.class
+act-1.0/uk/ac/sanger/pathogens/embl/GFFEntryInformation.class
+act-1.0/uk/ac/sanger/pathogens/embl/MSPcrunchEntryInformation.class
+act-1.0/uk/ac/sanger/pathogens/embl/LowerInteger.class
+act-1.0/uk/ac/sanger/pathogens/embl/UpperInteger.class
+act-1.0/uk/ac/sanger/pathogens/embl/FuzzyRange.class
+act-1.0/uk/ac/sanger/pathogens/embl/OutOfDateException.class
+act-1.0/uk/ac/sanger/pathogens/embl/DateStampFeature.class
+act-1.0/uk/ac/sanger/pathogens/embl/LocationParseNodeVector.class
+act-1.0/uk/ac/sanger/pathogens/embl/BetweenRange.class
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureTree.class
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureTree$FeatureEnumerator.class
+act-1.0/uk/ac/sanger/pathogens/embl/FeatureComparator.class
+act-1.0/uk/ac/sanger/pathogens/OutOfRangeException.class
+act-1.0/uk/ac/sanger/pathogens/StringVector.class
+act-1.0/uk/ac/sanger/pathogens/StringVector$1.class
+act-1.0/uk/ac/sanger/pathogens/ReadOnlyException.class
+act-1.0/uk/ac/sanger/pathogens/Document.class
+act-1.0/uk/ac/sanger/pathogens/InputStreamProgressListener.class
+act-1.0/uk/ac/sanger/pathogens/FileDocument.class
+act-1.0/uk/ac/sanger/pathogens/InputStreamProgressEvent.class
+act-1.0/uk/ac/sanger/pathogens/FileProgressDocument.class
+act-1.0/uk/ac/sanger/pathogens/FastVector.class
+act-1.0/uk/ac/sanger/pathogens/ProgressInputStream.class
+act-1.0/diana/CVS/Root
+act-1.0/diana/CVS/Repository
+act-1.0/diana/CVS/Entries
+act-1.0/diana/AlignMatch.java
+act-1.0/diana/AlignMatchVector.java
+act-1.0/diana/ChangeEvent.java
+act-1.0/diana/ChangeListener.java
+act-1.0/diana/ClipBoard.java
+act-1.0/diana/ComparisonData.java
+act-1.0/diana/ComparisonDataFactory.java
+act-1.0/diana/ComparisonDataParseException.java
+act-1.0/diana/Entry.java
+act-1.0/diana/EntryChangeEvent.java
+act-1.0/diana/EntryChangeListener.java
+act-1.0/diana/EntryGroup.java
+act-1.0/diana/EntryGroupChangeEvent.java
+act-1.0/diana/EntryGroupChangeListener.java
+act-1.0/diana/EntrySource.java
+act-1.0/diana/plot/CVS/Root
+act-1.0/diana/plot/CVS/Repository
+act-1.0/diana/plot/CVS/Entries
+act-1.0/diana/plot/AGWindowAlgorithm.java
+act-1.0/diana/plot/ATDeviationAlgorithm.java
+act-1.0/diana/plot/Algorithm.java
+act-1.0/diana/plot/BaseAlgorithm.java
+act-1.0/diana/plot/Codon12CorrelationAlgorithm.java
+act-1.0/diana/plot/CodonUsageAlgorithm.java
+act-1.0/diana/plot/CodonUsageFormatException.java
+act-1.0/diana/plot/CodonUsageWeight.java
+act-1.0/diana/plot/CodonWeight.java
+act-1.0/diana/plot/CoilFeatureAlgorithm.java
+act-1.0/diana/plot/HydroAlgorithm.java
+act-1.0/diana/plot/FeatureAlgorithm.java
+act-1.0/diana/plot/GCDeviationAlgorithm.java
+act-1.0/diana/plot/GCFrameAlgorithm.java
+act-1.0/diana/plot/GCSDWindowAlgorithm.java
+act-1.0/diana/plot/GCWindowAlgorithm.java
+act-1.0/diana/plot/HydrophilicityAlgorithm.java
+act-1.0/diana/plot/HydrophobicityAlgorithm.java
+act-1.0/diana/plot/UserDataAlgorithm.java
+act-1.0/diana/plot/BaseAlgorithm.class
+act-1.0/diana/plot/Algorithm.class
+act-1.0/diana/plot/Codon12CorrelationAlgorithm.class
+act-1.0/diana/plot/GCWindowAlgorithm.class
+act-1.0/diana/plot/GCSDWindowAlgorithm.class
+act-1.0/diana/plot/AGWindowAlgorithm.class
+act-1.0/diana/plot/GCFrameAlgorithm.class
+act-1.0/diana/plot/GCDeviationAlgorithm.class
+act-1.0/diana/plot/ATDeviationAlgorithm.class
+act-1.0/diana/plot/UserDataAlgorithm.class
+act-1.0/diana/plot/CodonUsageAlgorithm.class
+act-1.0/diana/plot/CodonUsageWeight.class
+act-1.0/diana/plot/CodonWeight.class
+act-1.0/diana/plot/FeatureAlgorithm.class
+act-1.0/diana/plot/HydrophobicityAlgorithm.class
+act-1.0/diana/plot/HydroAlgorithm.class
+act-1.0/diana/plot/HydrophilicityAlgorithm.class
+act-1.0/diana/plot/CoilFeatureAlgorithm.class
+act-1.0/diana/plot/CodonUsageFormatException.class
+act-1.0/diana/EntrySourceVector.java
+act-1.0/diana/EntryVector.java
+act-1.0/diana/ExternalApplication.java
+act-1.0/diana/ExternalProgram.java
+act-1.0/diana/ExternalProgramException.java
+act-1.0/diana/ExternalProgramVector.java
+act-1.0/diana/ExternalSearchProgram.java
+act-1.0/diana/Feature.java
+act-1.0/diana/FeatureChangeEvent.java
+act-1.0/diana/FeatureChangeListener.java
+act-1.0/diana/FeatureEnumeration.java
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