Bump PORTREVISION for ports depending on the canonical version of GCC

as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

50 files changed, 50 insertions, 32 deletions

diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile
index d1eb83c9b86f..a7e86aeffa70 100644
--- a/biology/abyss/Makefile
+++ b/biology/abyss/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	abyss
 DISTVERSION=	2.1.5
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology
 MASTER_SITES=	http://www.bcgsc.ca/platform/bioinfo/software/${PORTNAME}/releases/${DISTVERSION}/
 
diff --git a/biology/bedtools/Makefile b/biology/bedtools/Makefile
index e3d31bb443fd..7595ab5a82de 100644
--- a/biology/bedtools/Makefile
+++ b/biology/bedtools/Makefile
@@ -3,7 +3,7 @@
 PORTNAME=	bedtools
 DISTVERSIONPREFIX=	v
 DISTVERSION=	2.27.1
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/bolt-lmm/Makefile b/biology/bolt-lmm/Makefile
index f1d8abc328fd..0adc15f83868 100644
--- a/biology/bolt-lmm/Makefile
+++ b/biology/bolt-lmm/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	bolt-lmm
 DISTVERSION=	2.3.2
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/
 DISTNAME=	BOLT-LMM_v${PORTVERSION}
diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile
index ec9032be740a..ac49626c8c38 100644
--- a/biology/bowtie/Makefile
+++ b/biology/bowtie/Makefile
@@ -3,7 +3,7 @@
 PORTNAME=		bowtie
 DISTVERSIONPREFIX=	v
 DISTVERSION=		1.1.2
-PORTREVISION=		8
+PORTREVISION=		9
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/canu/Makefile b/biology/canu/Makefile
index 7000b7362ede..b5d8d296f1aa 100644
--- a/biology/canu/Makefile
+++ b/biology/canu/Makefile
@@ -3,7 +3,7 @@
 PORTNAME=		canu
 DISTVERSIONPREFIX=	v
 DISTVERSION=		1.8
-PORTREVISION=		3
+PORTREVISION=		4
 CATEGORIES=		biology java perl5
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile
index d7a9b7690069..a1ecb4f7503a 100644
--- a/biology/cd-hit/Makefile
+++ b/biology/cd-hit/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=		cd-hit
 DISTVERSIONPREFIX=	V
 DISTVERSION=		4.8.1
+PORTREVISION=	1
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/checkm/Makefile b/biology/checkm/Makefile
index a4bb57a62655..b752cdb3c53f 100644
--- a/biology/checkm/Makefile
+++ b/biology/checkm/Makefile
@@ -3,7 +3,7 @@
 PORTNAME=	CheckM
 DISTVERSIONPREFIX=	v
 DISTVERSION=	1.0.13
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology python
 
 MAINTAINER=	yuri@FreeBSD.org
diff --git a/biology/ddocent/Makefile b/biology/ddocent/Makefile
index c2e8498fbe21..65da902553d5 100644
--- a/biology/ddocent/Makefile
+++ b/biology/ddocent/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=		dDocent
 DISTVERSIONPREFIX=	v
 DISTVERSION=		2.7.8
+PORTREVISION=	1
 CATEGORIES=		biology java perl5 python
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/dsr-pdb/Makefile b/biology/dsr-pdb/Makefile
index 52caf90d7693..3cbca5249f1c 100644
--- a/biology/dsr-pdb/Makefile
+++ b/biology/dsr-pdb/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	dsr-pdb
 DISTVERSION=	1.0.3
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology
 MASTER_SITES=	https://graphics.stanford.edu/~drussel/
 DISTNAME=	${PORTNAME}
diff --git a/biology/fastp/Makefile b/biology/fastp/Makefile
index 09c0d09200e5..56a2a0a8e5db 100644
--- a/biology/fastp/Makefile
+++ b/biology/fastp/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=		fastp
 DISTVERSIONPREFIX=	v
 DISTVERSION=		0.20.0
+PORTREVISION=	1
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile
index f58a6794c10c..4ee19b0e2b6b 100644
--- a/biology/fasttree/Makefile
+++ b/biology/fasttree/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	FastTree
 DISTVERSION=	2.1.10
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	biology
 MASTER_SITES=	http://www.microbesonline.org/fasttree/
 EXTRACT_SUFX=	.c
diff --git a/biology/freebayes/Makefile b/biology/freebayes/Makefile
index 28de1d68e915..a7032ea4cfb4 100644
--- a/biology/freebayes/Makefile
+++ b/biology/freebayes/Makefile
@@ -3,7 +3,7 @@
 PORTNAME=		freebayes
 DISTVERSIONPREFIX=	v
 DISTVERSION=		1.2.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/gemma/Makefile b/biology/gemma/Makefile
index 2c285b7a1696..72634c0e3506 100644
--- a/biology/gemma/Makefile
+++ b/biology/gemma/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	gemma
 DISTVERSION=	0.98.1
+PORTREVISION=	1
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/groopm/Makefile b/biology/groopm/Makefile
index 490324666f4e..3c03c259116f 100644
--- a/biology/groopm/Makefile
+++ b/biology/groopm/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	GroopM
 DISTVERSION=	0.3.4
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology python
 MASTER_SITES=	CHEESESHOP
 
diff --git a/biology/hhsuite/Makefile b/biology/hhsuite/Makefile
index 822c19e39909..be144682d138 100644
--- a/biology/hhsuite/Makefile
+++ b/biology/hhsuite/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=	hhsuite
 DISTVERSIONPREFIX=	v
 DISTVERSION=	3.2.0
+PORTREVISION=	1
 CATEGORIES=	biology science
 
 MAINTAINER=	yuri@FreeBSD.org
diff --git a/biology/hmmer/Makefile b/biology/hmmer/Makefile
index 3b67e57b4797..0a4880bc7c95 100644
--- a/biology/hmmer/Makefile
+++ b/biology/hmmer/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	hmmer
 PORTVERSION=	3.2.1
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://eddylab.org/software/hmmer/
 
diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile
index cdd5437dca2a..564b57a5cf4a 100644
--- a/biology/hyphy/Makefile
+++ b/biology/hyphy/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	hyphy
 DISTVERSION=	2.3.14-16
-PORTREVISION=	1
+PORTREVISION=	2
 DISTVERSIONSUFFIX=	-g3d88d3e6
 CATEGORIES=	biology
 
diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile
index 0e821b70c442..c690905f614c 100644
--- a/biology/iqtree/Makefile
+++ b/biology/iqtree/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=	iqtree
 DISTVERSIONPREFIX=	v
 DISTVERSION=	1.6.11
+PORTREVISION=	1
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile
index 684a3b2143aa..72abb6bfe9aa 100644
--- a/biology/jellyfish/Makefile
+++ b/biology/jellyfish/Makefile
@@ -3,7 +3,7 @@
 PORTNAME=		Jellyfish
 DISTVERSIONPREFIX=	v
 DISTVERSION=		2.2.10
-PORTREVISION=		5
+PORTREVISION=		6
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile
index c7b30f5f7f51..fa270e8e9aab 100644
--- a/biology/kallisto/Makefile
+++ b/biology/kallisto/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=		kallisto
 DISTVERSIONPREFIX=	v
 DISTVERSION=		0.46.0
+PORTREVISION=	1
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index 1e0f5d92ceef..4211e3ced6aa 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	molden
 DISTVERSION=	5.8.2
-PORTREVISION=	2
+PORTREVISION=	3
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.cmbi.umcn.nl/pub/molgraph/molden/
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index 79c8eb233c5d..693b25e745ff 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	mopac
 PORTVERSION=	7.${MOPAC_SUBVERSION}
-PORTREVISION=	7
+PORTREVISION=	8
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://bioinformatics.org/ghemical/download/%SUBDIR%/
diff --git a/biology/mothur/Makefile b/biology/mothur/Makefile
index f78077ba09a5..e725e8262474 100644
--- a/biology/mothur/Makefile
+++ b/biology/mothur/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=	mothur
 DISTVERSIONPREFIX=	v.
 DISTVERSION=	1.42.3
+PORTREVISION=	1
 CATEGORIES=	biology
 
 MAINTAINER=	yuri@FreeBSD.org
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile
index 968e767c08fe..6da22776fc91 100644
--- a/biology/mummer/Makefile
+++ b/biology/mummer/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	mummer
 DISTVERSIONPREFIX=	v
 DISTVERSION=	4.0.0beta2-2
-PORTREVISION=	1
+PORTREVISION=	2
 DISTVERSIONSUFFIX=	-g277dac5
 CATEGORIES=	biology
 
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index f4570f142696..30704459b13b 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	ncbi-blast+
 DISTVERSION=	2.9.0
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology perl5 python
 MASTER_SITES=	https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
 		https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile
index e124db31ac60..cf54c8d11aa9 100644
--- a/biology/ncbi-cxx-toolkit/Makefile
+++ b/biology/ncbi-cxx-toolkit/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	ncbi-cxx-toolkit
 DISTVERSION=	21_0_0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology science devel
 MASTER_SITES=	ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2018/Apr_2_2018/
 DISTNAME=	ncbi_cxx--${DISTVERSION}
diff --git a/biology/p5-transdecoder/Makefile b/biology/p5-transdecoder/Makefile
index fc8a034f814d..09c87b259313 100644
--- a/biology/p5-transdecoder/Makefile
+++ b/biology/p5-transdecoder/Makefile
@@ -3,7 +3,7 @@
 PORTNAME=	transdecoder
 DISTVERSIONPREFIX=	TransDecoder-v
 DISTVERSION=	5.4.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology perl5
 PKGNAMEPREFIX=	p5-
 
diff --git a/biology/pbbam/Makefile b/biology/pbbam/Makefile
index cba5125f0920..295987bc08e9 100644
--- a/biology/pbbam/Makefile
+++ b/biology/pbbam/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	pbbam
 DISTVERSION=	0.18.0 # Test with biology/unanimity before upgrading!
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/pbcopper/Makefile b/biology/pbcopper/Makefile
index 337b55286e82..bec60b36397d 100644
--- a/biology/pbcopper/Makefile
+++ b/biology/pbcopper/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	pbcopper
 DISTVERSION=	0.4.1 # Test with biology/unanimity before upgrading!
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/prodigy-lig/Makefile b/biology/prodigy-lig/Makefile
index 1eff3f7b5d7f..ccc9c5f32df7 100644
--- a/biology/prodigy-lig/Makefile
+++ b/biology/prodigy-lig/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=	prodigy-lig
 DISTVERSIONPREFIX=	v
 DISTVERSION=	1.0.0-3
+PORTREVISION=	1
 DISTVERSIONSUFFIX=	-g152ac59
 CATEGORIES=	biology python
 
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index 8a845002474c..723191f05722 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	psi88
 PORTVERSION=	1.0
-PORTREVISION=	15
+PORTREVISION=	16
 CATEGORIES=	biology
 MASTER_SITES=	http://www.ccl.net/cca/software/SOURCES/FORTRAN/psi88/
 DISTNAME=	${PORTNAME}
diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile
index 1eb621328c67..4b3c3f117610 100644
--- a/biology/py-biom-format/Makefile
+++ b/biology/py-biom-format/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	biom-format
 PORTVERSION=	2.1.7
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile
index d8d117405493..371c06f47d2f 100644
--- a/biology/py-biopython/Makefile
+++ b/biology/py-biopython/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	biopython
 PORTVERSION=	1.73
+PORTREVISION=	1
 CATEGORIES=	biology python
 MASTER_SITES=	http://www.biopython.org/DIST/
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-bx-python/Makefile b/biology/py-bx-python/Makefile
index cf93c1a833dc..c92e092a2780 100644
--- a/biology/py-bx-python/Makefile
+++ b/biology/py-bx-python/Makefile
@@ -4,6 +4,7 @@
 PORTNAME=	bx-python
 DISTVERSIONPREFIX=	v
 DISTVERSION=	0.8.4
+PORTREVISION=	1
 CATEGORIES=	biology python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/biology/py-fastTSNE/Makefile b/biology/py-fastTSNE/Makefile
index a836ebdcfb8b..0a647f0e023a 100644
--- a/biology/py-fastTSNE/Makefile
+++ b/biology/py-fastTSNE/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	fastTSNE
 DISTVERSION=	0.2.13
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-gtfparse/Makefile b/biology/py-gtfparse/Makefile
index 32af223f74a7..7989f8bb014f 100644
--- a/biology/py-gtfparse/Makefile
+++ b/biology/py-gtfparse/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	gtfparse
 DISTVERSION=	1.2.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-loompy/Makefile b/biology/py-loompy/Makefile
index c9043f706374..68bbc692c603 100644
--- a/biology/py-loompy/Makefile
+++ b/biology/py-loompy/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	loompy
 DISTVERSION=	2.0.17
+PORTREVISION=	1
 CATEGORIES=	biology python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/py-macs2/Makefile b/biology/py-macs2/Makefile
index 1fd1faf302bc..c3d5177fc5aa 100644
--- a/biology/py-macs2/Makefile
+++ b/biology/py-macs2/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	macs2
 PORTVERSION=	2.1.0.p20170505
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/biology/py-orange3-bioinformatics/Makefile b/biology/py-orange3-bioinformatics/Makefile
index 5148dc2bc963..d5555fd3f24d 100644
--- a/biology/py-orange3-bioinformatics/Makefile
+++ b/biology/py-orange3-bioinformatics/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	orange3-bioinformatics
 DISTVERSION=	3.2.2
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/biology/py-orange3-single-cell/Makefile b/biology/py-orange3-single-cell/Makefile
index 41d46c95b25a..06d7ca887c37 100644
--- a/biology/py-orange3-single-cell/Makefile
+++ b/biology/py-orange3-single-cell/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	orange3-single-cell
 DISTVERSION=	0.8.2
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/biology/pycogent/Makefile b/biology/pycogent/Makefile
index 12341e799135..9725f99bf076 100644
--- a/biology/pycogent/Makefile
+++ b/biology/pycogent/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	pycogent
 PORTVERSION=	1.9
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology python
 
 MAINTAINER=	python@FreeBSD.org
diff --git a/biology/pyfasta/Makefile b/biology/pyfasta/Makefile
index b5871a0fab0d..012ffaa83c15 100644
--- a/biology/pyfasta/Makefile
+++ b/biology/pyfasta/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	pyfasta
 PORTVERSION=	0.5.2
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	biology python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/biology/seqan-apps/Makefile b/biology/seqan-apps/Makefile
index e8984624a13a..a825aa6de102 100644
--- a/biology/seqan-apps/Makefile
+++ b/biology/seqan-apps/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	seqan-apps
 DISTVERSIONPREFIX=	seqan-v
 DISTVERSION=	2.4.0
-PORTREVISION=	6
+PORTREVISION=	7
 CATEGORIES=	biology
 
 MAINTAINER=	h2+fbsdports@fsfe.org
diff --git a/biology/seqtools/Makefile b/biology/seqtools/Makefile
index b3ea7a1fc85a..d078110c50e9 100644
--- a/biology/seqtools/Makefile
+++ b/biology/seqtools/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	seqtools
 PORTVERSION=	4.44.1
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/
 
diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile
index f2e69b114170..9bbb1c171b55 100644
--- a/biology/stacks/Makefile
+++ b/biology/stacks/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	stacks
 DISTVERSION=	2.4
+PORTREVISION=	1
 CATEGORIES=	biology perl5 python
 MASTER_SITES=	http://catchenlab.life.illinois.edu/stacks/source/
 
diff --git a/biology/star/Makefile b/biology/star/Makefile
index 7fc0eeb5e941..b93f682bab5d 100644
--- a/biology/star/Makefile
+++ b/biology/star/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	STAR
 DISTVERSION=	2.7.0f
+PORTREVISION=	1
 CATEGORIES=	biology
 PKGNAMEPREFIX=	rna-
 
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index dee65d35c8b6..c27b44e5abb7 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	t_coffee
 PORTVERSION=	9.03
 DISTVERSIONSUFFIX=	.r1318
-PORTREVISION=	10
+PORTREVISION=	11
 CATEGORIES=	biology
 MASTER_SITES=	http://www.tcoffee.org/Packages/Stable/Version_${PORTVERSION}${DISTVERSIONSUFFIX}/
 DISTNAME=	T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
diff --git a/biology/treekin/Makefile b/biology/treekin/Makefile
index 3836ca1483c0..a5b05149ab5d 100644
--- a/biology/treekin/Makefile
+++ b/biology/treekin/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	treekin
 DISTVERSION=	0.5.1
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	https://www.tbi.univie.ac.at/RNA/packages/source/
 DISTNAME=	Treekin-${DISTVERSION}
diff --git a/biology/unanimity/Makefile b/biology/unanimity/Makefile
index e6dcd1109fc5..8c6eab3cc4cd 100644
--- a/biology/unanimity/Makefile
+++ b/biology/unanimity/Makefile
@@ -3,7 +3,7 @@
 PORTNAME=		unanimity
 DISTVERSIONPREFIX=	v
 DISTVERSION=		3.4.1
-PORTREVISION=		1
+PORTREVISION=		2
 CATEGORIES=		biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/viennarna/Makefile b/biology/viennarna/Makefile
index 6a9ac252d81b..e59497145a19 100644
--- a/biology/viennarna/Makefile
+++ b/biology/viennarna/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	viennarna
 DISTVERSION=	2.4.13
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/
 DISTNAME=	ViennaRNA-${DISTVERSION}