diff options
| author | Rene Ladan <rene@FreeBSD.org> | 2021-09-11 14:57:58 +0000 |
|---|---|---|
| committer | Rene Ladan <rene@FreeBSD.org> | 2021-09-30 21:23:30 +0000 |
| commit | 620968a43a5f9bb3fa98ab20f257a4c0d864caa7 (patch) | |
| tree | 09bef799707f4b6e715b912429bd3b73c1addf4c /biology | |
| parent | b9a93c0bf4778b9ec327c1be6f819eb1ff90ec19 (diff) | |
| download | ports-620968a43a5f9bb3fa98ab20f257a4c0d864caa7.tar.gz ports-620968a43a5f9bb3fa98ab20f257a4c0d864caa7.zip | |
cleanup: drop support for EOL FreeBSD 11.X
Search criteria used:
- 11.4
- OSREL*
- OSVER*
- *_FreeBSD_11
Input from:
- adridg: devel/qca-legacy
- jbeich: _WITH_DPRINTF, _WITH_GETLINE, GNU bfd workarounds
- sunpoet: security/p5-*OpenSSL*
Reviewed by: doceng, kde, multimedia, perl, python, ruby, rust
Differential Revision: https://reviews.freebsd.org/D32008
Test Plan: make index
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/abyss/Makefile | 1 | ||||
| -rw-r--r-- | biology/ddocent/Makefile | 4 | ||||
| -rw-r--r-- | biology/igv/Makefile | 2 | ||||
| -rw-r--r-- | biology/jalview/Makefile | 2 | ||||
| -rw-r--r-- | biology/ncbi-cxx-toolkit/Makefile | 2 |
5 files changed, 1 insertions, 10 deletions
diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile index 141b25659a53..91d52df097ac 100644 --- a/biology/abyss/Makefile +++ b/biology/abyss/Makefile @@ -9,7 +9,6 @@ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE BROKEN_i386= result of comparison of constant 18446744073709551615 with expression of type 'size_t', see https://github.com/bcgsc/abyss/issues/310 -BROKEN_FreeBSD_11= error: use of undeclared identifier 'getline'; did you mean 'std::getline'? BUILD_DEPENDS= ${LOCALBASE}/include/boost/version.hpp:devel/boost-libs \ ghc:lang/ghc \ diff --git a/biology/ddocent/Makefile b/biology/ddocent/Makefile index bc27815d529c..52f2eda96af0 100644 --- a/biology/ddocent/Makefile +++ b/biology/ddocent/Makefile @@ -9,9 +9,7 @@ COMMENT= Bash pipeline for RAD sequencing LICENSE= MIT -# ddocent test data do not unpack with FreeBSD 11.1 /usr/bin/unzip -RUN_DEPENDS= unzip>=0:archivers/unzip \ - mawk>=0:lang/mawk \ +RUN_DEPENDS= mawk>=0:lang/mawk \ gawk>=0:lang/gawk \ coreutils>=0:sysutils/coreutils \ gnuplot>=0:math/gnuplot \ diff --git a/biology/igv/Makefile b/biology/igv/Makefile index 9803043d22a8..2b23dc18806e 100644 --- a/biology/igv/Makefile +++ b/biology/igv/Makefile @@ -13,8 +13,6 @@ COMMENT= Visualization tool for genomic datasets LICENSE= MIT LICENSE_FILE= ${WRKSRC}/license.txt -BROKEN_FreeBSD_11= FAILURE: Build failed with an exception. - BUILD_DEPENDS= openjfx14>0:java/openjfx14 \ gradle:devel/gradle6 RUN_DEPENDS= openjfx14>0:java/openjfx14 diff --git a/biology/jalview/Makefile b/biology/jalview/Makefile index b41d1b9abf27..7b7581d2b320 100644 --- a/biology/jalview/Makefile +++ b/biology/jalview/Makefile @@ -14,8 +14,6 @@ COMMENT= Viewer and editor for multiple sequence alignments LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -BROKEN_FreeBSD_11= gradle daemon systematically fails on 11: The message received from the daemon indicates that the daemon has disappeared. - BUILD_DEPENDS= gradle:devel/gradle6 USE_JAVA= yes diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 49d024208177..4148f33e2d63 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -10,8 +10,6 @@ COMMENT= NCBI C++ Toolkit LICENSE= PD LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE -BROKEN_FreeBSD_11= libxconnserv.so, not found (try using -rpath or -rpath-link) - LIB_DEPENDS= libcdd.so:math/cddlib \ liblmdb.so:databases/lmdb \ libpcre.so:devel/pcre |