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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2021-08-25 19:54:09 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2021-08-25 20:28:23 +0000 |
| commit | cc5fdc14d94309a7dbae28f96689202781c1e299 (patch) | |
| tree | ad2f59ca4645616407d1f29bcb75774807d6e038 /biology | |
| parent | 5c2e32c94f1c429f6f395734b1119f86db5e30a4 (diff) | |
| download | ports-cc5fdc14d94309a7dbae28f96689202781c1e299.tar.gz ports-cc5fdc14d94309a7dbae28f96689202781c1e299.zip | |
biology/ncbi-cxx-toolkit: Update 22.0.0 -> 25.0.0
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/ncbi-cxx-toolkit/Makefile | 25 | ||||
| -rw-r--r-- | biology/ncbi-cxx-toolkit/distinfo | 6 |
2 files changed, 21 insertions, 10 deletions
diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index d8ab6730f753..4148f33e2d63 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,7 +1,7 @@ PORTNAME= ncbi-cxx-toolkit -DISTVERSION= 22_0_0 +DISTVERSION= 25_0_0 CATEGORIES= biology science devel -MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/ +MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2021/Aug_18_2021/ DISTNAME= ncbi_cxx--${DISTVERSION} MAINTAINER= yuri@FreeBSD.org @@ -10,25 +10,36 @@ COMMENT= NCBI C++ Toolkit LICENSE= PD LICENSE_FILE= ${WRKSRC}/doc/public/LICENSE -LIB_DEPENDS= liblmdb.so:databases/lmdb \ +LIB_DEPENDS= libcdd.so:math/cddlib \ + liblmdb.so:databases/lmdb \ libpcre.so:devel/pcre RUN_DEPENDS= bash:shells/bash USES= compiler:c++11-lang gmake mysql perl5 python shebangfix ssl xorg -SHEBANG_FILES= src/app/blast/get_species_taxids.sh src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl src/app/winmasker/windowmasker_2.2.22_adapter.py USE_XORG= x11 xpm +SHEBANG_FILES= src/app/blast/get_species_taxids.sh +SHEBANG_GLOB= *.pl *.py + GNU_CONFIGURE= yes -CONFIGURE_ARGS= --without-debug --with-dll --without-static +CONFIGURE_ARGS= --without-debug --with-dll --without-static \ + --without-vdb + +WRKSRC= ${WRKDIR}/public-${DISTVERSION:S/_/./g}-2021-08-18-11-21-29 post-install: # strip @${FIND} ${STAGEDIR}${PREFIX}/bin -type f | ${GREP} -v -E '\.(sh|py|pl)$$' | ${XARGS} ${STRIP_CMD} @${FIND} ${STAGEDIR}${PREFIX}/lib -name "*.so" | ${XARGS} ${STRIP_CMD} # remove an empty directory - @${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg + #@${RMDIR} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/objtools/data_loaders/genbank/psg + @${RMDIR} \ + ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms/formats \ + ${STAGEDIR}${PREFIX}/include/ncbi-tools++/algo/ms # remove the conflicting file - @${RM} ${STAGEDIR}${PREFIX}/lib/liblmdb.so + @${RM} \ + ${STAGEDIR}${PREFIX}/lib/libcdd.so \ + ${STAGEDIR}${PREFIX}/lib/liblmdb.so # autoplist: thousands of files @cd ${STAGEDIR}${PREFIX} && \ ${RMDIR} include/ncbi-tools++/algo/blast/bl2api include/ncbi-tools++/objtools/test && \ diff --git a/biology/ncbi-cxx-toolkit/distinfo b/biology/ncbi-cxx-toolkit/distinfo index 5ded16bce9b4..d85ae212645c 100644 --- a/biology/ncbi-cxx-toolkit/distinfo +++ b/biology/ncbi-cxx-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1600993142 -SHA256 (ncbi_cxx--22_0_0.tar.gz) = ef39429bbc7f13c44c0d327432d9cfb430f9f20d10d825e6b2c4ddd7ccce457f -SIZE (ncbi_cxx--22_0_0.tar.gz) = 56042079 +TIMESTAMP = 1629878632 +SHA256 (ncbi_cxx--25_0_0.tar.gz) = 0158971349839b69ea96b3b88db774ac1692befd9910c040a00186e841ef5ed5 +SIZE (ncbi_cxx--25_0_0.tar.gz) = 95801019 |