2 files changed, 7 insertions, 468 deletions

diff --git a/math/R-cran-igraph/Makefile b/math/R-cran-igraph/Makefile
index c911db69c393..a455f767423b 100644
--- a/math/R-cran-igraph/Makefile
+++ b/math/R-cran-igraph/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	igraph
 PORTVERSION=	0.5.2
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	math
 MASTER_SITES=	SF/${PORTNAME}/R%20source%20package/${PORTVERSION}
 PKGNAMEPREFIX=	R-cran-
diff --git a/math/R-cran-igraph/pkg-plist b/math/R-cran-igraph/pkg-plist
index 3048914c3a9d..857a7d0e426a 100644
--- a/math/R-cran-igraph/pkg-plist
+++ b/math/R-cran-igraph/pkg-plist
@@ -1,484 +1,26 @@
 %%R_MOD_DIR%%/CITATION
-%%R_MOD_DIR%%/CONTENTS
 %%R_MOD_DIR%%/DESCRIPTION
 %%R_MOD_DIR%%/INDEX
 %%R_MOD_DIR%%/LICENSE
 %%R_MOD_DIR%%/Meta/Rd.rds
 %%R_MOD_DIR%%/Meta/hsearch.rds
+%%R_MOD_DIR%%/Meta/links.rds
 %%R_MOD_DIR%%/Meta/nsInfo.rds
 %%R_MOD_DIR%%/Meta/package.rds
 %%R_MOD_DIR%%/NAMESPACE
 %%R_MOD_DIR%%/R/igraph
 %%R_MOD_DIR%%/R/igraph.rdb
 %%R_MOD_DIR%%/R/igraph.rdx
-%%R_MOD_DIR%%/R-ex/aging.prefatt.game.R
-%%R_MOD_DIR%%/R-ex/alpha.centrality.R
-%%R_MOD_DIR%%/R-ex/arpack.R
-%%R_MOD_DIR%%/R-ex/articulation.points.R
-%%R_MOD_DIR%%/R-ex/as.directed.R
-%%R_MOD_DIR%%/R-ex/attributes.R
-%%R_MOD_DIR%%/R-ex/ba.game.R
-%%R_MOD_DIR%%/R-ex/betweenness.R
-%%R_MOD_DIR%%/R-ex/biconnected.components.R
-%%R_MOD_DIR%%/R-ex/bipartite.projection.R
-%%R_MOD_DIR%%/R-ex/bonpow.R
-%%R_MOD_DIR%%/R-ex/canonical.permutation.R
-%%R_MOD_DIR%%/R-ex/cliques.R
-%%R_MOD_DIR%%/R-ex/closeness.R
-%%R_MOD_DIR%%/R-ex/clusters.R
-%%R_MOD_DIR%%/R-ex/cocitation.R
-%%R_MOD_DIR%%/R-ex/cohesive.blocks.R
-%%R_MOD_DIR%%/R-ex/community.edge.betweenness.R
-%%R_MOD_DIR%%/R-ex/community.structure.R
-%%R_MOD_DIR%%/R-ex/components.R
-%%R_MOD_DIR%%/R-ex/constraint.R
-%%R_MOD_DIR%%/R-ex/conversion.R
-%%R_MOD_DIR%%/R-ex/decompose.graph.R
-%%R_MOD_DIR%%/R-ex/degree.R
-%%R_MOD_DIR%%/R-ex/degree.sequence.game.R
-%%R_MOD_DIR%%/R-ex/diameter.R
-%%R_MOD_DIR%%/R-ex/dyad.census.R
-%%R_MOD_DIR%%/R-ex/edge.connectivity.R
-%%R_MOD_DIR%%/R-ex/erdos.renyi.game.R
-%%R_MOD_DIR%%/R-ex/evcent.R
-%%R_MOD_DIR%%/R-ex/fastgreedy.community.R
-%%R_MOD_DIR%%/R-ex/forest.fire.game.R
-%%R_MOD_DIR%%/R-ex/get.adjlist.R
-%%R_MOD_DIR%%/R-ex/get.incidence.R
-%%R_MOD_DIR%%/R-ex/girth.R
-%%R_MOD_DIR%%/R-ex/graph.adjacency.R
-%%R_MOD_DIR%%/R-ex/graph.adjlist.R
-%%R_MOD_DIR%%/R-ex/graph.automorphisms.R
-%%R_MOD_DIR%%/R-ex/graph.bipartite.R
-%%R_MOD_DIR%%/R-ex/graph.constructors.R
-%%R_MOD_DIR%%/R-ex/graph.data.frame.R
-%%R_MOD_DIR%%/R-ex/graph.de.bruijn.R
-%%R_MOD_DIR%%/R-ex/graph.density.R
-%%R_MOD_DIR%%/R-ex/graph.famous.R
-%%R_MOD_DIR%%/R-ex/graph.formula.R
-%%R_MOD_DIR%%/R-ex/graph.full.bipartite.R
-%%R_MOD_DIR%%/R-ex/graph.graphdb.R
-%%R_MOD_DIR%%/R-ex/graph.incidence.R
-%%R_MOD_DIR%%/R-ex/graph.isomorphism.R
-%%R_MOD_DIR%%/R-ex/graph.kautz.R
-%%R_MOD_DIR%%/R-ex/graph.kcores.R
-%%R_MOD_DIR%%/R-ex/graph.knn.R
-%%R_MOD_DIR%%/R-ex/graph.laplacian.R
-%%R_MOD_DIR%%/R-ex/graph.lcf.R
-%%R_MOD_DIR%%/R-ex/graph.maxflow.R
-%%R_MOD_DIR%%/R-ex/graph.motifs.R
-%%R_MOD_DIR%%/R-ex/graph.strength.R
-%%R_MOD_DIR%%/R-ex/graph.structure.R
-%%R_MOD_DIR%%/R-ex/graphNEL.R
-%%R_MOD_DIR%%/R-ex/grg.game.R
-%%R_MOD_DIR%%/R-ex/growing.random.game.R
-%%R_MOD_DIR%%/R-ex/igraph.par.R
-%%R_MOD_DIR%%/R-ex/igraph.sample.R
-%%R_MOD_DIR%%/R-ex/igraph.vertex.shapes.R
-%%R_MOD_DIR%%/R-ex/independent.sets.R
-%%R_MOD_DIR%%/R-ex/is.bipartite.R
-%%R_MOD_DIR%%/R-ex/is.graph.R
-%%R_MOD_DIR%%/R-ex/is.multiple.R
-%%R_MOD_DIR%%/R-ex/is.mutual.R
-%%R_MOD_DIR%%/R-ex/iterators.R
-%%R_MOD_DIR%%/R-ex/kleinberg.R
-%%R_MOD_DIR%%/R-ex/label.propagation.community.R
-%%R_MOD_DIR%%/R-ex/layout.R
-%%R_MOD_DIR%%/R-ex/layout.drl.R
-%%R_MOD_DIR%%/R-ex/layout.merge.R
-%%R_MOD_DIR%%/R-ex/leading.eigenvector.R
-%%R_MOD_DIR%%/R-ex/line.graph.R
-%%R_MOD_DIR%%/R-ex/minimum.spanning.tree.R
-%%R_MOD_DIR%%/R-ex/modularity.R
-%%R_MOD_DIR%%/R-ex/neighborhood.R
-%%R_MOD_DIR%%/R-ex/operators.R
-%%R_MOD_DIR%%/R-ex/page.rank.R
-%%R_MOD_DIR%%/R-ex/permute.vertices.R
-%%R_MOD_DIR%%/R-ex/plot.bgraph.R
-%%R_MOD_DIR%%/R-ex/plot.common.R
-%%R_MOD_DIR%%/R-ex/plot.graph.R
-%%R_MOD_DIR%%/R-ex/power.law.fit.R
-%%R_MOD_DIR%%/R-ex/preference.game.R
-%%R_MOD_DIR%%/R-ex/print.graph.R
-%%R_MOD_DIR%%/R-ex/reciprocity.R
-%%R_MOD_DIR%%/R-ex/rewire.R
-%%R_MOD_DIR%%/R-ex/rewire.edges.R
-%%R_MOD_DIR%%/R-ex/rglplot.R
-%%R_MOD_DIR%%/R-ex/running.mean.R
-%%R_MOD_DIR%%/R-ex/shortest.paths.R
-%%R_MOD_DIR%%/R-ex/similarity.R
-%%R_MOD_DIR%%/R-ex/simplify.R
-%%R_MOD_DIR%%/R-ex/spinglass.community.R
-%%R_MOD_DIR%%/R-ex/structure.info.R
-%%R_MOD_DIR%%/R-ex/subgraph.R
-%%R_MOD_DIR%%/R-ex/tkplot.R
-%%R_MOD_DIR%%/R-ex/topological.sort.R
-%%R_MOD_DIR%%/R-ex/traits.R
-%%R_MOD_DIR%%/R-ex/transitivity.R
-%%R_MOD_DIR%%/R-ex/triad.census.R
-%%R_MOD_DIR%%/R-ex/unfold.tree.R
-%%R_MOD_DIR%%/R-ex/vertex.connectivity.R
-%%R_MOD_DIR%%/R-ex/walktrap.community.R
-%%R_MOD_DIR%%/R-ex/watts.strogatz.game.R
-%%R_MOD_DIR%%/R-ex/write.graph.R
 %%R_MOD_DIR%%/help/AnIndex
-%%R_MOD_DIR%%/help/aaa-igraph-package
-%%R_MOD_DIR%%/help/aging.prefatt.game
-%%R_MOD_DIR%%/help/alpha.centrality
-%%R_MOD_DIR%%/help/arpack
-%%R_MOD_DIR%%/help/articulation.points
-%%R_MOD_DIR%%/help/as.directed
-%%R_MOD_DIR%%/help/attributes
-%%R_MOD_DIR%%/help/ba.game
-%%R_MOD_DIR%%/help/betweenness
-%%R_MOD_DIR%%/help/biconnected.components
-%%R_MOD_DIR%%/help/bipartite.projection
-%%R_MOD_DIR%%/help/bonpow
-%%R_MOD_DIR%%/help/canonical.permutation
-%%R_MOD_DIR%%/help/cliques
-%%R_MOD_DIR%%/help/closeness
-%%R_MOD_DIR%%/help/clusters
-%%R_MOD_DIR%%/help/cocitation
-%%R_MOD_DIR%%/help/cohesive.blocks
-%%R_MOD_DIR%%/help/community.edge.betweenness
-%%R_MOD_DIR%%/help/community.structure
-%%R_MOD_DIR%%/help/components
-%%R_MOD_DIR%%/help/constraint
-%%R_MOD_DIR%%/help/conversion
-%%R_MOD_DIR%%/help/decompose.graph
-%%R_MOD_DIR%%/help/degree
-%%R_MOD_DIR%%/help/degree.sequence.game
-%%R_MOD_DIR%%/help/diameter
-%%R_MOD_DIR%%/help/dyad.census
-%%R_MOD_DIR%%/help/edge.connectivity
-%%R_MOD_DIR%%/help/erdos.renyi.game
-%%R_MOD_DIR%%/help/evcent
-%%R_MOD_DIR%%/help/evolver
-%%R_MOD_DIR%%/help/fastgreedy.community
-%%R_MOD_DIR%%/help/forest.fire.game
-%%R_MOD_DIR%%/help/get.adjlist
-%%R_MOD_DIR%%/help/get.incidence
-%%R_MOD_DIR%%/help/girth
-%%R_MOD_DIR%%/help/graph.adjacency
-%%R_MOD_DIR%%/help/graph.adjlist
-%%R_MOD_DIR%%/help/graph.automorphisms
-%%R_MOD_DIR%%/help/graph.bipartite
-%%R_MOD_DIR%%/help/graph.constructors
-%%R_MOD_DIR%%/help/graph.data.frame
-%%R_MOD_DIR%%/help/graph.de.bruijn
-%%R_MOD_DIR%%/help/graph.density
-%%R_MOD_DIR%%/help/graph.famous
-%%R_MOD_DIR%%/help/graph.formula
-%%R_MOD_DIR%%/help/graph.full.bipartite
-%%R_MOD_DIR%%/help/graph.graphdb
-%%R_MOD_DIR%%/help/graph.incidence
-%%R_MOD_DIR%%/help/graph.isomorphism
-%%R_MOD_DIR%%/help/graph.kautz
-%%R_MOD_DIR%%/help/graph.kcores
-%%R_MOD_DIR%%/help/graph.knn
-%%R_MOD_DIR%%/help/graph.laplacian
-%%R_MOD_DIR%%/help/graph.lcf
-%%R_MOD_DIR%%/help/graph.maxflow
-%%R_MOD_DIR%%/help/graph.motifs
-%%R_MOD_DIR%%/help/graph.strength
-%%R_MOD_DIR%%/help/graph.structure
-%%R_MOD_DIR%%/help/graphNEL
-%%R_MOD_DIR%%/help/grg.game
-%%R_MOD_DIR%%/help/growing.random.game
-%%R_MOD_DIR%%/help/igraph.par
-%%R_MOD_DIR%%/help/igraph.sample
-%%R_MOD_DIR%%/help/igraph.vertex.shapes
-%%R_MOD_DIR%%/help/independent.sets
-%%R_MOD_DIR%%/help/is.bipartite
-%%R_MOD_DIR%%/help/is.graph
-%%R_MOD_DIR%%/help/is.multiple
-%%R_MOD_DIR%%/help/is.mutual
-%%R_MOD_DIR%%/help/iterators
-%%R_MOD_DIR%%/help/kleinberg
-%%R_MOD_DIR%%/help/label.propagation.community
-%%R_MOD_DIR%%/help/layout
-%%R_MOD_DIR%%/help/layout.drl
-%%R_MOD_DIR%%/help/layout.merge
-%%R_MOD_DIR%%/help/leading.eigenvector
-%%R_MOD_DIR%%/help/line.graph
-%%R_MOD_DIR%%/help/measure.dynamics
-%%R_MOD_DIR%%/help/minimum.spanning.tree
-%%R_MOD_DIR%%/help/modularity
-%%R_MOD_DIR%%/help/neighborhood
-%%R_MOD_DIR%%/help/operators
-%%R_MOD_DIR%%/help/page.rank
-%%R_MOD_DIR%%/help/permute.vertices
-%%R_MOD_DIR%%/help/plot.bgraph
-%%R_MOD_DIR%%/help/plot.common
-%%R_MOD_DIR%%/help/plot.graph
-%%R_MOD_DIR%%/help/power.law.fit
-%%R_MOD_DIR%%/help/preference.game
-%%R_MOD_DIR%%/help/print.graph
-%%R_MOD_DIR%%/help/read.graph
-%%R_MOD_DIR%%/help/reciprocity
-%%R_MOD_DIR%%/help/rewire
-%%R_MOD_DIR%%/help/rewire.edges
-%%R_MOD_DIR%%/help/rglplot
-%%R_MOD_DIR%%/help/running.mean
-%%R_MOD_DIR%%/help/shortest.paths
-%%R_MOD_DIR%%/help/similarity
-%%R_MOD_DIR%%/help/simplify
-%%R_MOD_DIR%%/help/spinglass.community
-%%R_MOD_DIR%%/help/structure.info
-%%R_MOD_DIR%%/help/subgraph
-%%R_MOD_DIR%%/help/tkigraph
-%%R_MOD_DIR%%/help/tkplot
-%%R_MOD_DIR%%/help/topological.sort
-%%R_MOD_DIR%%/help/traits
-%%R_MOD_DIR%%/help/transitivity
-%%R_MOD_DIR%%/help/triad.census
-%%R_MOD_DIR%%/help/undocumented
-%%R_MOD_DIR%%/help/unfold.tree
-%%R_MOD_DIR%%/help/vertex.connectivity
-%%R_MOD_DIR%%/help/walktrap.community
-%%R_MOD_DIR%%/help/watts.strogatz.game
-%%R_MOD_DIR%%/help/write.graph
-%%R_MOD_DIR%%/help/write.pajek.bgraph
+%%R_MOD_DIR%%/help/aliases.rds
+%%R_MOD_DIR%%/help/paths.rds
+%%R_MOD_DIR%%/help/igraph.rdb
+%%R_MOD_DIR%%/help/igraph.rdx
 %%R_MOD_DIR%%/html/00Index.html
-%%R_MOD_DIR%%/html/aaa-igraph-package.html
-%%R_MOD_DIR%%/html/aging.prefatt.game.html
-%%R_MOD_DIR%%/html/alpha.centrality.html
-%%R_MOD_DIR%%/html/arpack.html
-%%R_MOD_DIR%%/html/articulation.points.html
-%%R_MOD_DIR%%/html/as.directed.html
-%%R_MOD_DIR%%/html/attributes.html
-%%R_MOD_DIR%%/html/ba.game.html
-%%R_MOD_DIR%%/html/betweenness.html
-%%R_MOD_DIR%%/html/biconnected.components.html
-%%R_MOD_DIR%%/html/bipartite.projection.html
-%%R_MOD_DIR%%/html/bonpow.html
-%%R_MOD_DIR%%/html/canonical.permutation.html
-%%R_MOD_DIR%%/html/cliques.html
-%%R_MOD_DIR%%/html/closeness.html
-%%R_MOD_DIR%%/html/clusters.html
-%%R_MOD_DIR%%/html/cocitation.html
-%%R_MOD_DIR%%/html/cohesive.blocks.html
-%%R_MOD_DIR%%/html/community.edge.betweenness.html
-%%R_MOD_DIR%%/html/community.structure.html
-%%R_MOD_DIR%%/html/components.html
-%%R_MOD_DIR%%/html/constraint.html
-%%R_MOD_DIR%%/html/conversion.html
-%%R_MOD_DIR%%/html/decompose.graph.html
-%%R_MOD_DIR%%/html/degree.html
-%%R_MOD_DIR%%/html/degree.sequence.game.html
-%%R_MOD_DIR%%/html/diameter.html
-%%R_MOD_DIR%%/html/dyad.census.html
-%%R_MOD_DIR%%/html/edge.connectivity.html
-%%R_MOD_DIR%%/html/erdos.renyi.game.html
-%%R_MOD_DIR%%/html/evcent.html
-%%R_MOD_DIR%%/html/evolver.html
-%%R_MOD_DIR%%/html/fastgreedy.community.html
-%%R_MOD_DIR%%/html/forest.fire.game.html
-%%R_MOD_DIR%%/html/get.adjlist.html
-%%R_MOD_DIR%%/html/get.incidence.html
-%%R_MOD_DIR%%/html/girth.html
-%%R_MOD_DIR%%/html/graph.adjacency.html
-%%R_MOD_DIR%%/html/graph.adjlist.html
-%%R_MOD_DIR%%/html/graph.automorphisms.html
-%%R_MOD_DIR%%/html/graph.bipartite.html
-%%R_MOD_DIR%%/html/graph.constructors.html
-%%R_MOD_DIR%%/html/graph.data.frame.html
-%%R_MOD_DIR%%/html/graph.de.bruijn.html
-%%R_MOD_DIR%%/html/graph.density.html
-%%R_MOD_DIR%%/html/graph.famous.html
-%%R_MOD_DIR%%/html/graph.formula.html
-%%R_MOD_DIR%%/html/graph.full.bipartite.html
-%%R_MOD_DIR%%/html/graph.graphdb.html
-%%R_MOD_DIR%%/html/graph.incidence.html
-%%R_MOD_DIR%%/html/graph.isomorphism.html
-%%R_MOD_DIR%%/html/graph.kautz.html
-%%R_MOD_DIR%%/html/graph.kcores.html
-%%R_MOD_DIR%%/html/graph.knn.html
-%%R_MOD_DIR%%/html/graph.laplacian.html
-%%R_MOD_DIR%%/html/graph.lcf.html
-%%R_MOD_DIR%%/html/graph.maxflow.html
-%%R_MOD_DIR%%/html/graph.motifs.html
-%%R_MOD_DIR%%/html/graph.strength.html
-%%R_MOD_DIR%%/html/graph.structure.html
-%%R_MOD_DIR%%/html/graphNEL.html
-%%R_MOD_DIR%%/html/grg.game.html
-%%R_MOD_DIR%%/html/growing.random.game.html
-%%R_MOD_DIR%%/html/igraph.par.html
-%%R_MOD_DIR%%/html/igraph.sample.html
-%%R_MOD_DIR%%/html/igraph.vertex.shapes.html
-%%R_MOD_DIR%%/html/independent.sets.html
-%%R_MOD_DIR%%/html/is.bipartite.html
-%%R_MOD_DIR%%/html/is.graph.html
-%%R_MOD_DIR%%/html/is.multiple.html
-%%R_MOD_DIR%%/html/is.mutual.html
-%%R_MOD_DIR%%/html/iterators.html
-%%R_MOD_DIR%%/html/kleinberg.html
-%%R_MOD_DIR%%/html/label.propagation.community.html
-%%R_MOD_DIR%%/html/layout.drl.html
-%%R_MOD_DIR%%/html/layout.html
-%%R_MOD_DIR%%/html/layout.merge.html
-%%R_MOD_DIR%%/html/leading.eigenvector.html
-%%R_MOD_DIR%%/html/line.graph.html
-%%R_MOD_DIR%%/html/measure.dynamics.html
-%%R_MOD_DIR%%/html/minimum.spanning.tree.html
-%%R_MOD_DIR%%/html/modularity.html
-%%R_MOD_DIR%%/html/neighborhood.html
-%%R_MOD_DIR%%/html/operators.html
-%%R_MOD_DIR%%/html/page.rank.html
-%%R_MOD_DIR%%/html/permute.vertices.html
-%%R_MOD_DIR%%/html/plot.bgraph.html
-%%R_MOD_DIR%%/html/plot.common.html
-%%R_MOD_DIR%%/html/plot.graph.html
-%%R_MOD_DIR%%/html/power.law.fit.html
-%%R_MOD_DIR%%/html/preference.game.html
-%%R_MOD_DIR%%/html/print.graph.html
-%%R_MOD_DIR%%/html/read.graph.html
-%%R_MOD_DIR%%/html/reciprocity.html
-%%R_MOD_DIR%%/html/rewire.edges.html
-%%R_MOD_DIR%%/html/rewire.html
-%%R_MOD_DIR%%/html/rglplot.html
-%%R_MOD_DIR%%/html/running.mean.html
-%%R_MOD_DIR%%/html/shortest.paths.html
-%%R_MOD_DIR%%/html/similarity.html
-%%R_MOD_DIR%%/html/simplify.html
-%%R_MOD_DIR%%/html/spinglass.community.html
-%%R_MOD_DIR%%/html/structure.info.html
-%%R_MOD_DIR%%/html/subgraph.html
-%%R_MOD_DIR%%/html/tkigraph.html
-%%R_MOD_DIR%%/html/tkplot.html
-%%R_MOD_DIR%%/html/topological.sort.html
-%%R_MOD_DIR%%/html/traits.html
-%%R_MOD_DIR%%/html/transitivity.html
-%%R_MOD_DIR%%/html/triad.census.html
-%%R_MOD_DIR%%/html/undocumented.html
-%%R_MOD_DIR%%/html/unfold.tree.html
-%%R_MOD_DIR%%/html/vertex.connectivity.html
-%%R_MOD_DIR%%/html/walktrap.community.html
-%%R_MOD_DIR%%/html/watts.strogatz.game.html
-%%R_MOD_DIR%%/html/write.graph.html
-%%R_MOD_DIR%%/html/write.pajek.bgraph.html
-%%R_MOD_DIR%%/html_library.license.terms
 %%R_MOD_DIR%%/html_library.tcl
+%%R_MOD_DIR%%/html_library.license.terms
 %%R_MOD_DIR%%/igraph.gif
-%%R_MOD_DIR%%/latex/aaa-igraph-package.tex
-%%R_MOD_DIR%%/latex/aging.prefatt.game.tex
-%%R_MOD_DIR%%/latex/alpha.centrality.tex
-%%R_MOD_DIR%%/latex/arpack.tex
-%%R_MOD_DIR%%/latex/articulation.points.tex
-%%R_MOD_DIR%%/latex/as.directed.tex
-%%R_MOD_DIR%%/latex/attributes.tex
-%%R_MOD_DIR%%/latex/ba.game.tex
-%%R_MOD_DIR%%/latex/betweenness.tex
-%%R_MOD_DIR%%/latex/biconnected.components.tex
-%%R_MOD_DIR%%/latex/bipartite.projection.tex
-%%R_MOD_DIR%%/latex/bonpow.tex
-%%R_MOD_DIR%%/latex/canonical.permutation.tex
-%%R_MOD_DIR%%/latex/cliques.tex
-%%R_MOD_DIR%%/latex/closeness.tex
-%%R_MOD_DIR%%/latex/clusters.tex
-%%R_MOD_DIR%%/latex/cocitation.tex
-%%R_MOD_DIR%%/latex/cohesive.blocks.tex
-%%R_MOD_DIR%%/latex/community.edge.betweenness.tex
-%%R_MOD_DIR%%/latex/community.structure.tex
-%%R_MOD_DIR%%/latex/components.tex
-%%R_MOD_DIR%%/latex/constraint.tex
-%%R_MOD_DIR%%/latex/conversion.tex
-%%R_MOD_DIR%%/latex/decompose.graph.tex
-%%R_MOD_DIR%%/latex/degree.sequence.game.tex
-%%R_MOD_DIR%%/latex/degree.tex
-%%R_MOD_DIR%%/latex/diameter.tex
-%%R_MOD_DIR%%/latex/dyad.census.tex
-%%R_MOD_DIR%%/latex/edge.connectivity.tex
-%%R_MOD_DIR%%/latex/erdos.renyi.game.tex
-%%R_MOD_DIR%%/latex/evcent.tex
-%%R_MOD_DIR%%/latex/evolver.tex
-%%R_MOD_DIR%%/latex/fastgreedy.community.tex
-%%R_MOD_DIR%%/latex/forest.fire.game.tex
-%%R_MOD_DIR%%/latex/get.adjlist.tex
-%%R_MOD_DIR%%/latex/get.incidence.tex
-%%R_MOD_DIR%%/latex/girth.tex
-%%R_MOD_DIR%%/latex/graph.adjacency.tex
-%%R_MOD_DIR%%/latex/graph.adjlist.tex
-%%R_MOD_DIR%%/latex/graph.automorphisms.tex
-%%R_MOD_DIR%%/latex/graph.bipartite.tex
-%%R_MOD_DIR%%/latex/graph.constructors.tex
-%%R_MOD_DIR%%/latex/graph.data.frame.tex
-%%R_MOD_DIR%%/latex/graph.de.bruijn.tex
-%%R_MOD_DIR%%/latex/graph.density.tex
-%%R_MOD_DIR%%/latex/graph.famous.tex
-%%R_MOD_DIR%%/latex/graph.formula.tex
-%%R_MOD_DIR%%/latex/graph.full.bipartite.tex
-%%R_MOD_DIR%%/latex/graph.graphdb.tex
-%%R_MOD_DIR%%/latex/graph.incidence.tex
-%%R_MOD_DIR%%/latex/graph.isomorphism.tex
-%%R_MOD_DIR%%/latex/graph.kautz.tex
-%%R_MOD_DIR%%/latex/graph.kcores.tex
-%%R_MOD_DIR%%/latex/graph.knn.tex
-%%R_MOD_DIR%%/latex/graph.laplacian.tex
-%%R_MOD_DIR%%/latex/graph.lcf.tex
-%%R_MOD_DIR%%/latex/graph.maxflow.tex
-%%R_MOD_DIR%%/latex/graph.motifs.tex
-%%R_MOD_DIR%%/latex/graph.strength.tex
-%%R_MOD_DIR%%/latex/graph.structure.tex
-%%R_MOD_DIR%%/latex/graphNEL.tex
-%%R_MOD_DIR%%/latex/grg.game.tex
-%%R_MOD_DIR%%/latex/growing.random.game.tex
-%%R_MOD_DIR%%/latex/igraph.par.tex
-%%R_MOD_DIR%%/latex/igraph.sample.tex
-%%R_MOD_DIR%%/latex/igraph.vertex.shapes.tex
-%%R_MOD_DIR%%/latex/independent.sets.tex
-%%R_MOD_DIR%%/latex/is.bipartite.tex
-%%R_MOD_DIR%%/latex/is.graph.tex
-%%R_MOD_DIR%%/latex/is.multiple.tex
-%%R_MOD_DIR%%/latex/is.mutual.tex
-%%R_MOD_DIR%%/latex/iterators.tex
-%%R_MOD_DIR%%/latex/kleinberg.tex
-%%R_MOD_DIR%%/latex/label.propagation.community.tex
-%%R_MOD_DIR%%/latex/layout.drl.tex
-%%R_MOD_DIR%%/latex/layout.merge.tex
-%%R_MOD_DIR%%/latex/layout.tex
-%%R_MOD_DIR%%/latex/leading.eigenvector.tex
-%%R_MOD_DIR%%/latex/line.graph.tex
-%%R_MOD_DIR%%/latex/measure.dynamics.tex
-%%R_MOD_DIR%%/latex/minimum.spanning.tree.tex
-%%R_MOD_DIR%%/latex/modularity.tex
-%%R_MOD_DIR%%/latex/neighborhood.tex
-%%R_MOD_DIR%%/latex/operators.tex
-%%R_MOD_DIR%%/latex/page.rank.tex
-%%R_MOD_DIR%%/latex/permute.vertices.tex
-%%R_MOD_DIR%%/latex/plot.bgraph.tex
-%%R_MOD_DIR%%/latex/plot.common.tex
-%%R_MOD_DIR%%/latex/plot.graph.tex
-%%R_MOD_DIR%%/latex/power.law.fit.tex
-%%R_MOD_DIR%%/latex/preference.game.tex
-%%R_MOD_DIR%%/latex/print.graph.tex
-%%R_MOD_DIR%%/latex/read.graph.tex
-%%R_MOD_DIR%%/latex/reciprocity.tex
-%%R_MOD_DIR%%/latex/rewire.edges.tex
-%%R_MOD_DIR%%/latex/rewire.tex
-%%R_MOD_DIR%%/latex/rglplot.tex
-%%R_MOD_DIR%%/latex/running.mean.tex
-%%R_MOD_DIR%%/latex/shortest.paths.tex
-%%R_MOD_DIR%%/latex/similarity.tex
-%%R_MOD_DIR%%/latex/simplify.tex
-%%R_MOD_DIR%%/latex/spinglass.community.tex
-%%R_MOD_DIR%%/latex/structure.info.tex
-%%R_MOD_DIR%%/latex/subgraph.tex
-%%R_MOD_DIR%%/latex/tkigraph.tex
-%%R_MOD_DIR%%/latex/tkplot.tex
-%%R_MOD_DIR%%/latex/topological.sort.tex
-%%R_MOD_DIR%%/latex/traits.tex
-%%R_MOD_DIR%%/latex/transitivity.tex
-%%R_MOD_DIR%%/latex/triad.census.tex
-%%R_MOD_DIR%%/latex/undocumented.tex
-%%R_MOD_DIR%%/latex/unfold.tree.tex
-%%R_MOD_DIR%%/latex/vertex.connectivity.tex
-%%R_MOD_DIR%%/latex/walktrap.community.tex
-%%R_MOD_DIR%%/latex/watts.strogatz.game.tex
-%%R_MOD_DIR%%/latex/write.graph.tex
-%%R_MOD_DIR%%/latex/write.pajek.bgraph.tex
 %%R_MOD_DIR%%/libs/igraph.so
-%%R_MOD_DIR%%/man/igraph.Rd.gz
 %%R_MOD_DIR%%/my_html_library.tcl
 %%R_MOD_DIR%%/tkigraph_help/communities.html
 %%R_MOD_DIR%%/tkigraph_help/index.html
@@ -486,11 +28,8 @@
 %%R_MOD_DIR%%/tkigraph_help/tkigraph-main.gif
 @dirrm %%R_MOD_DIR%%/Meta
 @dirrm %%R_MOD_DIR%%/R
-@dirrm %%R_MOD_DIR%%/R-ex
 @dirrm %%R_MOD_DIR%%/help
 @dirrm %%R_MOD_DIR%%/html
-@dirrm %%R_MOD_DIR%%/latex
 @dirrm %%R_MOD_DIR%%/libs
-@dirrm %%R_MOD_DIR%%/man
 @dirrm %%R_MOD_DIR%%/tkigraph_help
 @dirrm %%R_MOD_DIR%%