4 files changed, 254 insertions, 235 deletions

diff --git a/math/R-project/Makefile b/math/R-project/Makefile
index 7e7b09c7e2f7..7976bf394883 100644
--- a/math/R-project/Makefile
+++ b/math/R-project/Makefile
@@ -1,28 +1,27 @@
 # New ports collection makefile for:   R
-# Version required:    R-0.62.1
+# Version required:    R-0.62.2
 # Date created:                Tue Jun 23 07:36:55 EST 1998
 # Whom:                        Maurice Castro <maurice@serc.rmit.edu.au>
 #
-# $Id: Makefile,v 1.3 1998/06/28 23:37:34 steve Exp $
+# $Id: Makefile,v 1.4 1998/07/02 06:27:40 asami Exp $
 #
 
-DISTNAME=	R-0.62.1
-PKGNAME=	R-${PAPERSIZE:S/A4/a4/:S/LETTER/letter/:S/Letter/letter/}-0.62.1
+DISTNAME=	R-0.62.2
+PKGNAME=	R-${PAPERSIZE:S/A4/a4/:S/LETTER/letter/:S/Letter/letter/}-0.62.2
 CATEGORIES=	math
-MASTER_SITES=	ftp://ftp.ci.tuwien.ac.at/pub/R/src/base/ \
-		ftp://SunSITE.auc.dk/pub/languages/R/src/base/ \
+MASTER_SITES=	http://lib.stat.cmu.edu/R/CRAN/src/base/ \
+		ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \
+		http://cran.stat.wisc.edu/src/base/ \
+		ftp://ftp.ci.tuwien.ac.at/R/src/base/ \
+		http://SunSITE.auc.dk/R/src/base/ \
 		http://www.stat.unipg.it/pub/stat/statlib/R/CRAN/src/base/ \
 		ftp://ftp.u-aizu.ac.jp/pub/lang/R/CRAN/src/base/ \
-		ftp://ftp.stat.math.ethz.ch/R-CRAN/src/base/ \
-		http://lib.stat.cmu.edu/R/CRAN/src/base/ \
-		ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \
-		ftp://franz.stat.wisc.edu/pub/R/src/base/
+		ftp://dola.snu.ac.kr/pub/R/CRAN/src/base/ \
+		http://www.stat.math.ethz.ch/R-CRAN/src/base/
 EXTRACT_SUFX=	.tgz
 
 MAINTAINER=	maurice@serc.rmit.edu.au
 
-BROKEN=		package
-
 GNU_CONFIGURE=	yes
 USE_PERL5=	yes
 
@@ -41,6 +40,8 @@ PAPERSIZE_INVALID=yes
 
 ALL_TARGET=all help html
 
+MAN1=	R.1 Rdconv.1
+
 pre-fetch:
 .if defined(PAPERSIZE_INVALID)
 	@${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\""
@@ -48,11 +49,12 @@ pre-fetch:
 	@${FALSE}
 .endif
 
+test:
+	@(cd ${WRKSRC}; make test-All)
+
 do-install:
-	-gzip ${WRKSRC}/R.1
-	-gzip ${WRKSRC}/Rdconv.1
-	${INSTALL_DATA} ${WRKSRC}/R.1.gz ${PREFIX}/man/man1
-	${INSTALL_DATA} ${WRKSRC}/Rdconv.1.gz ${PREFIX}/man/man1
+	${INSTALL_MAN} ${WRKSRC}/R.1 ${PREFIX}/man/man1
+	${INSTALL_MAN} ${WRKSRC}/Rdconv.1 ${PREFIX}/man/man1
 	${SED} 's:PREFIX:${PREFIX}:;s:DEFAULTPAPER:${PAPERSIZE}:' ${FILESDIR}/R > ${PREFIX}/bin/R
 	(cd ${WRKSRC}; find . -type d -exec chmod a+rx \{\} \; )
 	(cd ${WRKSRC}; find . -type f -exec chmod a+r \{\} \; )
diff --git a/math/R-project/distinfo b/math/R-project/distinfo
index a2f9a895d801..fe6ae1f6747b 100644
--- a/math/R-project/distinfo
+++ b/math/R-project/distinfo
@@ -1 +1 @@
-MD5 (R-0.62.1.tgz) = 9385fbb32da8851d1c1cf847e1ff5644
+MD5 (R-0.62.2.tgz) = 3e3359d8fcda053a7c2ebf06fc8ef550
diff --git a/math/R-project/files/R b/math/R-project/files/R
index fdb58232ac6a..9b6eedb5a3fa 100644
--- a/math/R-project/files/R
+++ b/math/R-project/files/R
@@ -1,50 +1,38 @@
 #!/bin/sh
 # Shell wrapper for R executable.
-# Just sets a few environment items
 
 RHOME=PREFIX/share/R
 export RHOME
 
-if [ "$1" = "RHOME" ]
-then
-	echo $RHOME; exit 0
-fi
-    
-if [ "$1" = "SHLIB" ]
-then
-	shift
-	exec sh $RHOME/etc/SHLIB $*
-fi
-
-if [ "$1" = "COMPILE" ]
-then
-	shift
-	exec sh $RHOME/etc/COMPILE $*
-fi
-
-if [ "$1" = "INSTALL" ]
-then
-        shift
-        exec sh $RHOME/etc/INSTALL $*
-fi
-
-if [ "$1" = "REMOVE" ]
-then
-        shift
-        exec sh $RHOME/etc/REMOVE $*
-fi
-
-if [ "$1" = -xxgdb ]
-then
-	shift
-	DEBUGGER=xxgdb
-fi
-
-if [ "$1" = -gdb ]
-then
-	shift
-	DEBUGGER=gdb
-fi
+ARG=$1
+case ${ARG} in
+    RHOME)
+	echo ${RHOME}; exit 0 ;;
+    CMD)
+	shift; PATH=$PATH:$RHOME/cmd:$RHOME/etc exec $* ;;
+    SHLIB|COMPILE|INSTALL|REMOVE)
+	shift; exec sh ${RHOME}/etc/${ARG} $* ;;
+    -d|--debugger)
+	exec $2 ${RHOME}/bin/R.binary ;;
+    -h|--help|-\?)
+        echo "Usage:  R [OPTIONS] [< INFILE] [> OUTFILE]"
+        echo ""
+        echo "Options:"
+        echo "  --save                     Do save data sets at the end of the session."
+        echo "  --no-save                  Don't save them."
+        echo "  --restore                  Do restore previously saved data sets at startup."
+        echo "  --no-restore               Don't restore them."
+        echo "  --no-readline              Don't use readline for command-line editing."
+        echo "  --no-site-file             Don't read the site-wide Rprofile."
+        echo "  --no-init-file             Don't read the .Rprofile or ~/.Rprofile files."
+        echo "  -v N                       Set the vector heap size to N megabytes."
+        echo "  -n N                       Set the number of cons cells to N."
+        echo "  -h, --help, -?             Print short help message and exit."
+        echo "  -q, --quiet                Make R run as quietly as possible."
+        echo "  -V, --version              Print version info and exit."
+        echo "  -d NAME, --debugger NAME   Run R through debugger NAME."
+	exit 0 ;;
+esac	
 
 # Default Printer Paper Size
 # Choose one of the following
@@ -61,9 +49,4 @@ export R_PAPERSIZE
 R_PRINTCMD=lpr
 export R_PRINTCMD
 
-if [ $DEBUGGER ]
-then
-	exec $DEBUGGER $RHOME/bin/R.binary 
-else
-	exec $RHOME/bin/R.binary  $*
-fi
+exec ${RHOME}/bin/R.binary  $*
diff --git a/math/R-project/pkg-plist b/math/R-project/pkg-plist
index df74d76b3e10..5ed0136c4f70 100644
--- a/math/R-project/pkg-plist
+++ b/math/R-project/pkg-plist
@@ -1,14 +1,21 @@
 @exec mkdir %D/share/R
-@exec mkdir %D/share/R/bin
 @exec mkdir %D/share/R/afm
-@exec mkdir %D/share/R/etc
-@exec mkdir %D/share/R/etc/Rdoc
-@exec mkdir %D/share/R/etc/older-stuff
-@exec mkdir %D/share/R/etc/undoc
+@exec mkdir %D/share/R/bin
+@exec mkdir %D/share/R/cmd
+@exec mkdir %D/share/R/demos
+@exec mkdir %D/share/R/demos/dynload
+@exec mkdir %D/share/R/demos/graphics
+@exec mkdir %D/share/R/demos/language
+@exec mkdir %D/share/R/demos/models
+@exec mkdir %D/share/R/demos/nlm
 @exec mkdir %D/share/R/doc
 @exec mkdir %D/share/R/doc/html
 @exec mkdir %D/share/R/doc/html/search
 @exec mkdir %D/share/R/doc/manual
+@exec mkdir %D/share/R/etc
+@exec mkdir %D/share/R/etc/Rdoc
+@exec mkdir %D/share/R/etc/older-stuff
+@exec mkdir %D/share/R/etc/undoc
 @exec mkdir %D/share/R/include
 @exec mkdir %D/share/R/library
 @exec mkdir %D/share/R/library/base
@@ -18,32 +25,25 @@
 @exec mkdir %D/share/R/library/base/html
 @exec mkdir %D/share/R/library/base/latex
 @exec mkdir %D/share/R/library/eda
-@exec mkdir %D/share/R/library/eda/libs
 @exec mkdir %D/share/R/library/eda/R
 @exec mkdir %D/share/R/library/eda/help
 @exec mkdir %D/share/R/library/eda/html
 @exec mkdir %D/share/R/library/eda/latex
+@exec mkdir %D/share/R/library/eda/libs
 @exec mkdir %D/share/R/library/mva
-@exec mkdir %D/share/R/library/mva/libs
 @exec mkdir %D/share/R/library/mva/R
 @exec mkdir %D/share/R/library/mva/help
 @exec mkdir %D/share/R/library/mva/html
 @exec mkdir %D/share/R/library/mva/latex
+@exec mkdir %D/share/R/library/mva/libs
 @exec mkdir %D/share/R/library/stepfun
 @exec mkdir %D/share/R/library/stepfun/R
 @exec mkdir %D/share/R/library/stepfun/help
 @exec mkdir %D/share/R/library/stepfun/html
 @exec mkdir %D/share/R/library/stepfun/latex
-@exec mkdir %D/share/R/demos
-@exec mkdir %D/share/R/demos/dynload
-@exec mkdir %D/share/R/demos/models
-@exec mkdir %D/share/R/demos/graphics
-@exec mkdir %D/share/R/demos/language
-@exec mkdir %D/share/R/demos/nlm
-@exec mkdir %D/share/R/cmd
+bin/R
 man/man1/R.1.gz
 man/man1/Rdconv.1.gz
-share/R/bin/R.binary
 share/R/afm/AvantB
 share/R/afm/AvantBO
 share/R/afm/AvantD
@@ -64,8 +64,8 @@ share/R/afm/HelvNB
 share/R/afm/HelvNBO
 share/R/afm/HelvNO
 share/R/afm/HelvO
-share/R/afm/NCSchlB
 share/R/afm/Makefile
+share/R/afm/NCSchlB
 share/R/afm/NCSchlBI
 share/R/afm/NCSchlI
 share/R/afm/NCSchlR
@@ -82,35 +82,115 @@ share/R/afm/TimesO
 share/R/afm/TimesR
 share/R/afm/ZapfCMI
 share/R/afm/ZapfD
+share/R/bin/R.binary
+share/R/cmd/filename
+share/R/cmd/fwf2table
+share/R/cmd/fwf2table.in
+share/R/cmd/help
+share/R/cmd/loadpath
+share/R/cmd/pager
+share/R/demos/Makefile
+share/R/demos/dynload/Makefile
+share/R/demos/dynload/Makefile.in
+share/R/demos/dynload/README
+share/R/demos/dynload/zero.R
+share/R/demos/dynload/zero.c
+share/R/demos/graphics/graphics.R
+share/R/demos/graphics/image.R
+share/R/demos/language/is-things.R
+share/R/demos/language/recursion.R
+share/R/demos/language/scoping.R
+share/R/demos/models/glm-v+r.R
+share/R/demos/models/lm+glm.R
+share/R/demos/nlm/valley.R
+share/R/doc/KEYWORDS
+share/R/doc/Makefile
+share/R/doc/keyword-test
+share/R/doc/keyword-test.in
+share/R/doc/html/about.html
+share/R/doc/html/authors.html
+share/R/doc/html/function.html
+share/R/doc/html/index.html
+share/R/doc/html/left.jpg
+share/R/doc/html/logo.jpg
+share/R/doc/html/logosm.jpg
+share/R/doc/html/packages.html
+share/R/doc/html/resource.html
+share/R/doc/html/right.jpg
+share/R/doc/html/template.html
+share/R/doc/html/thanks.html
+share/R/doc/html/up.jpg
+share/R/doc/html/search/IndexEntry.class
+share/R/doc/html/search/IndexEntry.java
+share/R/doc/html/search/IndexStream.class
+share/R/doc/html/search/IndexStream.java
+share/R/doc/html/search/IndexTable.class
+share/R/doc/html/search/IndexTable.java
+share/R/doc/html/search/SearchEngine.class
+share/R/doc/html/search/SearchEngine.html
+share/R/doc/html/search/SearchEngine.java
+share/R/doc/html/search/Tracer.class
+share/R/doc/html/search/Tracer.java
+share/R/doc/html/search/Value.class
+share/R/doc/html/search/Value.java
+share/R/doc/html/search/index.txt
+share/R/doc/manual/ABOUT.tex
+share/R/doc/manual/EQN
+share/R/doc/manual/Makefile
+share/R/doc/manual/Man.tex
+share/R/doc/manual/Man0.tex
+share/R/doc/manual/Pkg-end.tex
+share/R/doc/manual/Pkg-start.tex
+share/R/doc/manual/Rd.sty
+share/R/doc/manual/lib2tex
+share/R/doc/manual/lib2tex.in
+share/R/doc/manual/plotmath.tex
+share/R/doc/manual/writing-Rd.tex
 share/R/etc/COMPILE
+share/R/etc/COMPILE.in
+share/R/etc/INSTALL
 share/R/etc/INSTALL.in
+share/R/etc/Makeconf
 share/R/etc/Makeconf.in
-share/R/etc/REMOVE.in
 share/R/etc/Makefile
+share/R/etc/REMOVE
+share/R/etc/REMOVE.in
 share/R/etc/Rd.files
 share/R/etc/Rd2dvi
 share/R/etc/Rd2txt
+share/R/etc/Rdconv
 share/R/etc/Rdconv.in
-share/R/etc/Rdindex.in
 share/R/etc/Rdconvlib.pl
-share/R/etc/SHLIB.in
+share/R/etc/Rdindex
+share/R/etc/Rdindex.in
+share/R/etc/Rman2Rd
 share/R/etc/Rman2Rd.in
+share/R/etc/SHLIB
+share/R/etc/SHLIB.in
+share/R/etc/Sd2Rd
 share/R/etc/Sd2Rd.in
 share/R/etc/build-alldocs
 share/R/etc/build-allhelp
 share/R/etc/build-allhtml
 share/R/etc/build-alllatex
+share/R/etc/build-help
 share/R/etc/build-help.in
-share/R/etc/colors.big
 share/R/etc/buildlib.pl
+share/R/etc/colors.big
 share/R/etc/colors.small
-share/R/etc/config.sub
 share/R/etc/config.guess
+share/R/etc/config.sub
+share/R/etc/help.pretty
 share/R/etc/help.pretty.in
 share/R/etc/html-layout.pl
+share/R/etc/html2dos
 share/R/etc/html2dos.in
-share/R/etc/tasks
 share/R/etc/install-sh
+share/R/etc/stamp-docs
+share/R/etc/stamp-help
+share/R/etc/stamp-html
+share/R/etc/stamp-latex
+share/R/etc/tasks
 share/R/etc/test-things.Rd
 share/R/etc/Rdoc/Rdconv.pl
 share/R/etc/Rdoc/Rdoc.pm
@@ -126,133 +206,76 @@ share/R/etc/older-stuff/help.index
 share/R/etc/older-stuff/help.pretty
 share/R/etc/older-stuff/help.pretty.perl
 share/R/etc/older-stuff/help.update
-share/R/etc/undoc/NoEx
 share/R/etc/undoc/Makefile
-share/R/etc/undoc/extrExamp
+share/R/etc/undoc/NoEx
 share/R/etc/undoc/R-funs
 share/R/etc/undoc/extrAllExamp
+share/R/etc/undoc/extrExamp
 share/R/etc/undoc/getDoc
 share/R/etc/undoc/getFunctions
 share/R/etc/undoc/getnames
-share/R/etc/INSTALL
-share/R/etc/Makeconf
-share/R/etc/REMOVE
-share/R/etc/Rdconv
-share/R/etc/Rdindex
-share/R/etc/Rman2Rd
-share/R/etc/SHLIB
-share/R/etc/Sd2Rd
-share/R/etc/build-help
-share/R/etc/help.pretty
-share/R/etc/html2dos
-share/R/etc/stamp-docs
-share/R/etc/stamp-help
-share/R/etc/stamp-html
-share/R/etc/stamp-latex
-share/R/doc/KEYWORDS
-share/R/doc/html/about.html
-share/R/doc/html/authors.html
-share/R/doc/html/index.html
-share/R/doc/html/left.jpg
-share/R/doc/html/logo.jpg
-share/R/doc/html/logosm.jpg
-share/R/doc/html/resource.html
-share/R/doc/html/right.jpg
-share/R/doc/html/template.html
-share/R/doc/html/thanks.html
-share/R/doc/html/up.jpg
-share/R/doc/html/search/IndexEntry.class
-share/R/doc/html/search/Value.class
-share/R/doc/html/search/IndexEntry.java
-share/R/doc/html/search/IndexStream.class
-share/R/doc/html/search/IndexStream.java
-share/R/doc/html/search/IndexTable.class
-share/R/doc/html/search/IndexTable.java
-share/R/doc/html/search/SearchEngine.class
-share/R/doc/html/search/SearchEngine.html
-share/R/doc/html/search/SearchEngine.java
-share/R/doc/html/search/Tracer.class
-share/R/doc/html/search/Tracer.java
-share/R/doc/html/search/index.txt
-share/R/doc/html/search/Value.java
-share/R/doc/html/packages.html
-share/R/doc/html/function.html
-share/R/doc/Makefile
-share/R/doc/keyword-test.in
-share/R/doc/manual/ABOUT.tex
-share/R/doc/manual/EQN
-share/R/doc/manual/Man.tex
-share/R/doc/manual/Makefile
-share/R/doc/manual/Man0.tex
-share/R/doc/manual/Pkg-end.tex
-share/R/doc/manual/Pkg-start.tex
-share/R/doc/manual/Rd.sty
-share/R/doc/manual/lib2tex.in
-share/R/doc/manual/plotmath.tex
-share/R/doc/manual/writing-Rd.tex
-share/R/doc/manual/lib2tex
-share/R/doc/keyword-test
-share/R/include/S.h
-share/R/include/S_compat.h
-share/R/include/f2c.h
-share/R/include/Fortran.h
 share/R/include/Blas.h
+share/R/include/Fortran.h
 share/R/include/Linpack.h
 share/R/include/Platform.h
-share/R/library/base/R/base
+share/R/include/S.h
+share/R/include/S_compat.h
+share/R/include/f2c.h
+share/R/library/LibIndex
+share/R/library/base/INDEX
+share/R/library/base/TITLE
 share/R/library/base/R/Rprofile
+share/R/library/base/R/base
 share/R/library/base/data/acid.R
-share/R/library/base/data/warpbreaks.R
-share/R/library/base/data/volcano.R
-share/R/library/base/data/uspop.R
-share/R/library/base/data/trees.R
-share/R/library/base/data/swiss.tab
-share/R/library/base/data/sunspots.R
-share/R/library/base/data/state.R
-share/R/library/base/data/stackloss.R
-share/R/library/base/data/sleep.R
-share/R/library/base/data/savings.R
-share/R/library/base/data/rivers.R
-share/R/library/base/data/randu.R
-share/R/library/base/data/quakes.R
-share/R/library/base/data/pressure.R
-share/R/library/base/data/presidents.R
-share/R/library/base/data/precip.R
-share/R/library/base/data/plants.R
-share/R/library/base/data/pigs.R
-share/R/library/base/data/phones.R
-share/R/library/base/data/nhtemp.R
-share/R/library/base/data/mtcars.R
-share/R/library/base/data/longley.R
-share/R/library/base/data/judges.R
-share/R/library/base/data/islands.R
-share/R/library/base/data/iris3.R
-share/R/library/base/data/iris.R
-share/R/library/base/data/insects.R
-share/R/library/base/data/infert.R
-share/R/library/base/data/index.doc
-share/R/library/base/data/freeny.R
-share/R/library/base/data/faithful.R
-share/R/library/base/data/eurodist.R
-share/R/library/base/data/esoph.R
-share/R/library/base/data/discoveries.R
-share/R/library/base/data/deaths.R
-share/R/library/base/data/crimes.tab
-share/R/library/base/data/consume.R
-share/R/library/base/data/chickwts.R
-share/R/library/base/data/cars.R
-share/R/library/base/data/bees.R
-share/R/library/base/data/attitude.R
-share/R/library/base/data/attenu.R
-share/R/library/base/data/anscombe.R
-share/R/library/base/data/airquality.tab
 share/R/library/base/data/airmiles.R
+share/R/library/base/data/airquality.tab
+share/R/library/base/data/anscombe.R
+share/R/library/base/data/attenu.R
+share/R/library/base/data/attitude.R
+share/R/library/base/data/bees.R
+share/R/library/base/data/cars.R
+share/R/library/base/data/chickwts.R
+share/R/library/base/data/consume.R
+share/R/library/base/data/crimes.tab
+share/R/library/base/data/deaths.R
+share/R/library/base/data/discoveries.R
+share/R/library/base/data/esoph.R
+share/R/library/base/data/eurodist.R
+share/R/library/base/data/faithful.R
+share/R/library/base/data/freeny.R
+share/R/library/base/data/index.doc
+share/R/library/base/data/infert.R
+share/R/library/base/data/insects.R
+share/R/library/base/data/iris.R
+share/R/library/base/data/iris3.R
+share/R/library/base/data/islands.R
+share/R/library/base/data/judges.R
+share/R/library/base/data/longley.R
+share/R/library/base/data/mtcars.R
+share/R/library/base/data/nhtemp.R
+share/R/library/base/data/phones.R
+share/R/library/base/data/pigs.R
+share/R/library/base/data/plants.R
+share/R/library/base/data/precip.R
+share/R/library/base/data/presidents.R
+share/R/library/base/data/pressure.R
+share/R/library/base/data/quakes.R
+share/R/library/base/data/randu.R
+share/R/library/base/data/rivers.R
+share/R/library/base/data/savings.R
+share/R/library/base/data/sleep.R
+share/R/library/base/data/stackloss.R
+share/R/library/base/data/state.R
+share/R/library/base/data/sunspots.R
+share/R/library/base/data/swiss.tab
+share/R/library/base/data/trees.R
+share/R/library/base/data/uspop.R
+share/R/library/base/data/volcano.R
+share/R/library/base/data/warpbreaks.R
 share/R/library/base/data/women.R
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-share/R/library/base/INDEX
 share/R/library/base/help/00Titles
-share/R/library/base/help/AnIndex
 share/R/library/base/help/Alias
+share/R/library/base/help/AnIndex
 share/R/library/base/help/Arithmetic
 share/R/library/base/help/Beta
 share/R/library/base/help/Binomial
@@ -308,10 +331,12 @@ share/R/library/base/help/abline
 share/R/library/base/help/acid
 share/R/library/base/help/airmiles
 share/R/library/base/help/airquality
+share/R/library/base/help/alias
 share/R/library/base/help/all
 share/R/library/base/help/allnames
 share/R/library/base/help/anova
 share/R/library/base/help/anscombe
+share/R/library/base/help/aov
 share/R/library/base/help/aperm
 share/R/library/base/help/append
 share/R/library/base/help/apply
@@ -368,6 +393,7 @@ share/R/library/base/help/convolve
 share/R/library/base/help/coplot
 share/R/library/base/help/cor
 share/R/library/base/help/count.fields
+share/R/library/base/help/cov.wt
 share/R/library/base/help/crimes
 share/R/library/base/help/crossprod
 share/R/library/base/help/cumsum
@@ -395,8 +421,8 @@ share/R/library/base/help/diag
 share/R/library/base/help/diff
 share/R/library/base/help/dim
 share/R/library/base/help/dimnames
-share/R/library/base/help/do.call
 share/R/library/base/help/discoveries
+share/R/library/base/help/do.call
 share/R/library/base/help/dotplot
 share/R/library/base/help/double
 share/R/library/base/help/dput
@@ -411,6 +437,7 @@ share/R/library/base/help/esoph
 share/R/library/base/help/eurodist
 share/R/library/base/help/eval
 share/R/library/base/help/exists
+share/R/library/base/help/expand.grid
 share/R/library/base/help/expression
 share/R/library/base/help/factor
 share/R/library/base/help/faithful
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 share/R/library/base/help/is.function
 share/R/library/base/help/is.language
 share/R/library/base/help/is.recursive
-share/R/library/base/help/isR
 share/R/library/base/help/is.single
+share/R/library/base/help/isR
 share/R/library/base/help/islands
 share/R/library/base/help/judges
 share/R/library/base/help/lapply
@@ -540,12 +567,15 @@ share/R/library/base/help/plotfactor
 share/R/library/base/help/plotformula
 share/R/library/base/help/pmatch
 share/R/library/base/help/points
+share/R/library/base/help/poly
 share/R/library/base/help/polygon
 share/R/library/base/help/polyroot
 share/R/library/base/help/postscript
 share/R/library/base/help/ppoints
 share/R/library/base/help/precip
 share/R/library/base/help/predict
+share/R/library/base/help/predict.glm
+share/R/library/base/help/predict.lm
 share/R/library/base/help/presidents
 share/R/library/base/help/pretty
 share/R/library/base/help/print
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 share/R/library/base/help/rgb
 share/R/library/base/help/rivers
 share/R/library/base/help/row
-share/R/library/base/help/sd
 share/R/library/base/help/rownames
+share/R/library/base/help/rug
 share/R/library/base/help/sample
 share/R/library/base/help/save
 share/R/library/base/help/savings
 share/R/library/base/help/scale
 share/R/library/base/help/scan
+share/R/library/base/help/sd
 share/R/library/base/help/search
 share/R/library/base/help/seq
 share/R/library/base/help/sequence
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 share/R/library/base/help/uniroot
 share/R/library/base/help/units
 share/R/library/base/help/unlink
-share/R/library/base/help/var
 share/R/library/base/help/unlist
+share/R/library/base/help/update
 share/R/library/base/help/update.formula
 share/R/library/base/help/update.lm
 share/R/library/base/help/uspop
+share/R/library/base/help/var
 share/R/library/base/help/vector
 share/R/library/base/help/volcano
 share/R/library/base/help/warning
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 share/R/library/base/html/Exponential.html
 share/R/library/base/html/Extract.html
 share/R/library/base/html/Extremes.html
-share/R/library/base/html/logical.html
 share/R/library/base/html/Foreign.html
 share/R/library/base/html/GammaDist.html
-share/R/library/base/html/NA.html
 share/R/library/base/html/Geometric.html
 share/R/library/base/html/Hyperbolic.html
 share/R/library/base/html/Hypergeometric.html
@@ -686,6 +716,7 @@ share/R/library/base/html/Logistic.html
 share/R/library/base/html/Lognormal.html
 share/R/library/base/html/Machine.html
 share/R/library/base/html/Math.html
+share/R/library/base/html/NA.html
 share/R/library/base/html/NChisquare.html
 share/R/library/base/html/NULL.html
 share/R/library/base/html/NegBinomial.html
@@ -696,7 +727,6 @@ share/R/library/base/html/REMOVE.html
 share/R/library/base/html/RHOME.html
 share/R/library/base/html/Random.html
 share/R/library/base/html/Round.html
-share/R/library/base/html/c.html
 share/R/library/base/html/SHLIB.html
 share/R/library/base/html/Special.html
 share/R/library/base/html/TDist.html
@@ -711,10 +741,12 @@ share/R/library/base/html/abline.html
 share/R/library/base/html/acid.html
 share/R/library/base/html/airmiles.html
 share/R/library/base/html/airquality.html
+share/R/library/base/html/alias.html
 share/R/library/base/html/all.html
 share/R/library/base/html/allnames.html
 share/R/library/base/html/anova.html
 share/R/library/base/html/anscombe.html
+share/R/library/base/html/aov.html
 share/R/library/base/html/aperm.html
 share/R/library/base/html/append.html
 share/R/library/base/html/apply.html
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 share/R/library/base/html/boxplot.stats.html
 share/R/library/base/html/browser.html
 share/R/library/base/html/bxp.html
+share/R/library/base/html/c.html
 share/R/library/base/html/call.html
 share/R/library/base/html/cars.html
 share/R/library/base/html/case.names.html
@@ -770,6 +803,7 @@ share/R/library/base/html/convolve.html
 share/R/library/base/html/coplot.html
 share/R/library/base/html/cor.html
 share/R/library/base/html/count.fields.html
+share/R/library/base/html/cov.wt.html
 share/R/library/base/html/crimes.html
 share/R/library/base/html/crossprod.html
 share/R/library/base/html/cumsum.html
@@ -813,6 +847,7 @@ share/R/library/base/html/esoph.html
 share/R/library/base/html/eurodist.html
 share/R/library/base/html/eval.html
 share/R/library/base/html/exists.html
+share/R/library/base/html/expand.grid.html
 share/R/library/base/html/expression.html
 share/R/library/base/html/factor.html
 share/R/library/base/html/faithful.html
@@ -854,9 +889,9 @@ share/R/library/base/html/invisible.html
 share/R/library/base/html/is.atomic.html
 share/R/library/base/html/is.finite.html
 share/R/library/base/html/is.function.html
-share/R/library/base/html/is.single.html
 share/R/library/base/html/is.language.html
 share/R/library/base/html/is.recursive.html
+share/R/library/base/html/is.single.html
 share/R/library/base/html/isR.html
 share/R/library/base/html/islands.html
 share/R/library/base/html/judges.html
@@ -875,6 +910,7 @@ share/R/library/base/html/lm.influence.html
 share/R/library/base/html/lm.summaries.html
 share/R/library/base/html/load.html
 share/R/library/base/html/locator.html
+share/R/library/base/html/logical.html
 share/R/library/base/html/longley.html
 share/R/library/base/html/lower.tri.html
 share/R/library/base/html/lowess.html
@@ -899,10 +935,10 @@ share/R/library/base/html/menu.html
 share/R/library/base/html/methods.html
 share/R/library/base/html/missing.html
 share/R/library/base/html/mode.html
-share/R/library/base/html/mtext.html
 share/R/library/base/html/model.extract.html
 share/R/library/base/html/model.frame.html
 share/R/library/base/html/model.matrix.html
+share/R/library/base/html/mtext.html
 share/R/library/base/html/na.action.html
 share/R/library/base/html/na.fail.html
 share/R/library/base/html/name.html
@@ -922,7 +958,6 @@ share/R/library/base/html/on.exit.html
 share/R/library/base/html/optimize.html
 share/R/library/base/html/options.html
 share/R/library/base/html/order.html
-share/R/library/base/html/qr.html
 share/R/library/base/html/outer.html
 share/R/library/base/html/pairs.html
 share/R/library/base/html/palette.html
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 share/R/library/base/html/plotformula.html
 share/R/library/base/html/pmatch.html
 share/R/library/base/html/points.html
+share/R/library/base/html/poly.html
 share/R/library/base/html/polygon.html
 share/R/library/base/html/polyroot.html
 share/R/library/base/html/postscript.html
-share/R/library/base/html/sd.html
 share/R/library/base/html/ppoints.html
 share/R/library/base/html/precip.html
 share/R/library/base/html/predict.html
+share/R/library/base/html/predict.glm.html
+share/R/library/base/html/predict.lm.html
 share/R/library/base/html/presidents.html
 share/R/library/base/html/pretty.html
 share/R/library/base/html/print.html
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 share/R/library/base/html/prompt.html
 share/R/library/base/html/prop.test.html
 share/R/library/base/html/qqnorm.html
+share/R/library/base/html/qr.html
 share/R/library/base/html/qraux.html
 share/R/library/base/html/quakes.html
 share/R/library/base/html/quantile.html
@@ -978,11 +1016,13 @@ share/R/library/base/html/rgb.html
 share/R/library/base/html/rivers.html
 share/R/library/base/html/row.html
 share/R/library/base/html/rownames.html
+share/R/library/base/html/rug.html
 share/R/library/base/html/sample.html
 share/R/library/base/html/save.html
 share/R/library/base/html/savings.html
 share/R/library/base/html/scale.html
 share/R/library/base/html/scan.html
+share/R/library/base/html/sd.html
 share/R/library/base/html/search.html
 share/R/library/base/html/seq.html
 share/R/library/base/html/sequence.html
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 share/R/library/base/latex/acid.tex
 share/R/library/base/latex/airmiles.tex
 share/R/library/base/latex/airquality.tex
+share/R/library/base/latex/alias.tex
 share/R/library/base/latex/all.tex
 share/R/library/base/latex/allnames.tex
 share/R/library/base/latex/anova.tex
 share/R/library/base/latex/anscombe.tex
+share/R/library/base/latex/aov.tex
 share/R/library/base/latex/aperm.tex
 share/R/library/base/latex/append.tex
 share/R/library/base/latex/apply.tex
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 share/R/library/base/latex/coplot.tex
 share/R/library/base/latex/cor.tex
 share/R/library/base/latex/count.fields.tex
+share/R/library/base/latex/cov.wt.tex
 share/R/library/base/latex/crimes.tex
 share/R/library/base/latex/crossprod.tex
 share/R/library/base/latex/cut.tex
@@ -1213,6 +1256,7 @@ share/R/library/base/latex/esoph.tex
 share/R/library/base/latex/eurodist.tex
 share/R/library/base/latex/eval.tex
 share/R/library/base/latex/exists.tex
+share/R/library/base/latex/expand.grid.tex
 share/R/library/base/latex/expression.tex
 share/R/library/base/latex/factor.tex
 share/R/library/base/latex/faithful.tex
@@ -1342,12 +1386,15 @@ share/R/library/base/latex/plotfactor.tex
 share/R/library/base/latex/plotformula.tex
 share/R/library/base/latex/pmatch.tex
 share/R/library/base/latex/points.tex
+share/R/library/base/latex/poly.tex
 share/R/library/base/latex/polygon.tex
 share/R/library/base/latex/polyroot.tex
 share/R/library/base/latex/postscript.tex
 share/R/library/base/latex/ppoints.tex
 share/R/library/base/latex/precip.tex
 share/R/library/base/latex/predict.tex
+share/R/library/base/latex/predict.glm.tex
+share/R/library/base/latex/predict.lm.tex
 share/R/library/base/latex/presidents.tex
 share/R/library/base/latex/pretty.tex
 share/R/library/base/latex/print.tex
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 share/R/library/base/latex/rivers.tex
 share/R/library/base/latex/row.tex
 share/R/library/base/latex/rownames.tex
+share/R/library/base/latex/rug.tex
 share/R/library/base/latex/sample.tex
 share/R/library/base/latex/save.tex
 share/R/library/base/latex/savings.tex
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 share/R/library/base/latex/units.tex
 share/R/library/base/latex/unlink.tex
 share/R/library/base/latex/unlist.tex
+share/R/library/base/latex/update.tex
 share/R/library/base/latex/update.formula.tex
 share/R/library/base/latex/update.lm.tex
 share/R/library/base/latex/uspop.tex
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 share/R/library/base/latex/write.table.tex
 share/R/library/base/latex/x11.tex
 share/R/library/base/latex/xy.coords.tex
-share/R/library/eda/libs/eda.so
-share/R/library/eda/R/eda
 share/R/library/eda/INDEX
 share/R/library/eda/TITLE
+share/R/library/eda/R/eda
 share/R/library/eda/help/00Titles
 share/R/library/eda/help/AnIndex
 share/R/library/eda/help/line
@@ -1471,32 +1519,38 @@ share/R/library/eda/html/smooth.html
 share/R/library/eda/latex/line.tex
 share/R/library/eda/latex/medpolish.tex
 share/R/library/eda/latex/smooth.tex
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-share/R/library/mva/libs/mva.so
-share/R/library/mva/R/mva
+share/R/library/eda/libs/eda.so
 share/R/library/mva/INDEX
 share/R/library/mva/TITLE
+share/R/library/mva/R/mva
 share/R/library/mva/help/00Titles
 share/R/library/mva/help/AnIndex
+share/R/library/mva/help/biplot
+share/R/library/mva/help/biplot.princomp
 share/R/library/mva/help/cancor
 share/R/library/mva/help/cmdscale
 share/R/library/mva/help/dist
 share/R/library/mva/help/hclust
 share/R/library/mva/help/prcomp
 share/R/library/mva/html/00Index.html
+share/R/library/mva/html/biplot.html
+share/R/library/mva/html/biplot.princomp.html
 share/R/library/mva/html/cancor.html
 share/R/library/mva/html/cmdscale.html
 share/R/library/mva/html/dist.html
 share/R/library/mva/html/hclust.html
 share/R/library/mva/html/prcomp.html
+share/R/library/mva/latex/biplot.tex
+share/R/library/mva/latex/biplot.princomp.tex
 share/R/library/mva/latex/cancor.tex
 share/R/library/mva/latex/cmdscale.tex
 share/R/library/mva/latex/dist.tex
 share/R/library/mva/latex/hclust.tex
 share/R/library/mva/latex/prcomp.tex
-share/R/library/stepfun/R/stepfun
+share/R/library/mva/libs/mva.so
 share/R/library/stepfun/INDEX
 share/R/library/stepfun/TITLE
+share/R/library/stepfun/R/stepfun
 share/R/library/stepfun/help/00Titles
 share/R/library/stepfun/help/AnIndex
 share/R/library/stepfun/help/ecdf
@@ -1509,26 +1563,6 @@ share/R/library/stepfun/html/stepfun.html
 share/R/library/stepfun/latex/ecdf.tex
 share/R/library/stepfun/latex/plot.stepfun.tex
 share/R/library/stepfun/latex/stepfun.tex
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-share/R/demos/dynload/zero.c
-share/R/demos/dynload/Makefile
-share/R/demos/models/glm-v+r.R
-share/R/demos/models/lm+glm.R
-share/R/demos/Makefile
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-share/R/demos/graphics/image.R
-share/R/demos/language/is-things.R
-share/R/demos/language/recursion.R
-share/R/demos/language/scoping.R
-share/R/demos/nlm/valley.R
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-share/R/cmd/fwf2table.in
-share/R/cmd/help
-share/R/cmd/loadpath
-share/R/cmd/pager
-share/R/cmd/fwf2table
 @dirrm share/R/etc/Rdoc
 @dirrm share/R/etc/older-stuff
 @dirrm share/R/etc/undoc