diff options
author | Ying-Chieh Liao <ijliao@FreeBSD.org> | 2003-10-29 03:39:15 +0000 |
---|---|---|
committer | Ying-Chieh Liao <ijliao@FreeBSD.org> | 2003-10-29 03:39:15 +0000 |
commit | 6e37a20d6833db182fc643c59394778e72f830c6 (patch) | |
tree | 90a38e6cbfaab2d46f5eaafc648bb5b89414b783 /math/R | |
parent | 28928f09b43850788b90e79a3059ec3bef5a9c18 (diff) | |
download | ports-6e37a20d6833db182fc643c59394778e72f830c6.tar.gz ports-6e37a20d6833db182fc643c59394778e72f830c6.zip |
Notes
Diffstat (limited to 'math/R')
-rw-r--r-- | math/R/Makefile | 9 | ||||
-rw-r--r-- | math/R/distinfo | 2 | ||||
-rw-r--r-- | math/R/pkg-plist | 756 |
3 files changed, 307 insertions, 460 deletions
diff --git a/math/R/Makefile b/math/R/Makefile index ed7f5be46e2e..139ca8ab6a54 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -6,7 +6,7 @@ # PORTNAME= R -PORTVERSION= 1.7.0 +PORTVERSION= 1.7.1 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ @@ -26,13 +26,18 @@ MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ - tk84:${PORTSDIR}/x11-toolkits/tk84 + tk84:${PORTSDIR}/x11-toolkits/tk84 \ + jpeg.9:${PORTSDIR}/graphics/jpeg \ + png.5:${PORTSDIR}/graphics/png \ + pcre.0:${PORTSDIR}/devel/pcre \ + lapack.3:${PORTSDIR}/math/lapack GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" +CONFIGURE_ARGS= --with-lapack PAPERSIZE?= letter .if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 diff --git a/math/R/distinfo b/math/R/distinfo index 63db5a7004bd..a438e43ae205 100644 --- a/math/R/distinfo +++ b/math/R/distinfo @@ -1 +1 @@ -MD5 (R-1.7.0.tgz) = 292dbe4dc47e6b492ff72a62471654ca +MD5 (R-1.7.1.tgz) = 833c2a9a62818211f2f9f0353ecd9bbd diff --git a/math/R/pkg-plist b/math/R/pkg-plist index 983fdcbfa5f0..fff84538a265 100644 --- a/math/R/pkg-plist +++ b/math/R/pkg-plist @@ -106,7 +106,6 @@ lib/R/bin/build lib/R/bin/check lib/R/bin/config lib/R/bin/f77 -lib/R/bin/libRlapack.so lib/R/bin/libtool lib/R/bin/pager lib/R/bin/texi2dvi @@ -492,6 +491,7 @@ lib/R/library/MASS/help/lh lib/R/library/MASS/help/lm.gls lib/R/library/MASS/help/lm.ridge lib/R/library/MASS/help/loglm +lib/R/library/MASS/help/loglm1 lib/R/library/MASS/help/logtrans lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca @@ -650,6 +650,7 @@ lib/R/library/MASS/html/lh.html lib/R/library/MASS/html/lm.gls.html lib/R/library/MASS/html/lm.ridge.html lib/R/library/MASS/html/loglm.html +lib/R/library/MASS/html/loglm1.html lib/R/library/MASS/html/logtrans.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html @@ -807,6 +808,7 @@ lib/R/library/MASS/latex/lh.tex lib/R/library/MASS/latex/lm.gls.tex lib/R/library/MASS/latex/lm.ridge.tex lib/R/library/MASS/latex/loglm.tex +lib/R/library/MASS/latex/loglm1.tex lib/R/library/MASS/latex/logtrans.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex @@ -1157,6 +1159,7 @@ lib/R/library/base/R-ex/function.R lib/R/library/base/R-ex/gc.R lib/R/library/base/R-ex/gc.time.R lib/R/library/base/R-ex/get.R +lib/R/library/base/R-ex/getAnywhere.R lib/R/library/base/R-ex/getFromNamespace.R lib/R/library/base/R-ex/getNativeSymbolInfo.R lib/R/library/base/R-ex/getS3method.R @@ -1244,7 +1247,7 @@ lib/R/library/base/R-ex/match.fun.R lib/R/library/base/R-ex/matmult.R lib/R/library/base/R-ex/matplot.R lib/R/library/base/R-ex/matrix.R -lib/R/library/base/R-ex/max.col.R +lib/R/library/base/R-ex/maxCol.R lib/R/library/base/R-ex/mean.R lib/R/library/base/R-ex/median.R lib/R/library/base/R-ex/memory.profile.R @@ -1380,6 +1383,7 @@ lib/R/library/base/R-ex/rowsum.R lib/R/library/base/R-ex/rug.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R +lib/R/library/base/R-ex/savehistory.R lib/R/library/base/R-ex/scale.R lib/R/library/base/R-ex/scan.R lib/R/library/base/R-ex/screen.R @@ -1841,6 +1845,7 @@ lib/R/library/base/help/gc lib/R/library/base/help/gc.time lib/R/library/base/help/gctorture lib/R/library/base/help/get +lib/R/library/base/help/getAnywhere lib/R/library/base/help/getFromNamespace lib/R/library/base/help/getNativeSymbolInfo lib/R/library/base/help/getS3method @@ -1944,7 +1949,7 @@ lib/R/library/base/help/match.fun lib/R/library/base/help/matmult lib/R/library/base/help/matplot lib/R/library/base/help/matrix -lib/R/library/base/help/max.col +lib/R/library/base/help/maxCol lib/R/library/base/help/mean lib/R/library/base/help/median lib/R/library/base/help/memory.profile @@ -2522,6 +2527,7 @@ lib/R/library/base/html/gc.html lib/R/library/base/html/gc.time.html lib/R/library/base/html/gctorture.html lib/R/library/base/html/get.html +lib/R/library/base/html/getAnywhere.html lib/R/library/base/html/getFromNamespace.html lib/R/library/base/html/getNativeSymbolInfo.html lib/R/library/base/html/getS3method.html @@ -2625,7 +2631,7 @@ lib/R/library/base/html/match.html lib/R/library/base/html/matmult.html lib/R/library/base/html/matplot.html lib/R/library/base/html/matrix.html -lib/R/library/base/html/max.col.html +lib/R/library/base/html/maxCol.html lib/R/library/base/html/mean.html lib/R/library/base/html/median.html lib/R/library/base/html/memory.profile.html @@ -3202,6 +3208,7 @@ lib/R/library/base/latex/gc.tex lib/R/library/base/latex/gc.time.tex lib/R/library/base/latex/gctorture.tex lib/R/library/base/latex/get.tex +lib/R/library/base/latex/getAnywhere.tex lib/R/library/base/latex/getFromNamespace.tex lib/R/library/base/latex/getNativeSymbolInfo.tex lib/R/library/base/latex/getS3method.tex @@ -3305,7 +3312,7 @@ lib/R/library/base/latex/match.tex lib/R/library/base/latex/matmult.tex lib/R/library/base/latex/matplot.tex lib/R/library/base/latex/matrix.tex -lib/R/library/base/latex/max.col.tex +lib/R/library/base/latex/maxCol.tex lib/R/library/base/latex/mean.tex lib/R/library/base/latex/median.tex lib/R/library/base/latex/memory.profile.tex @@ -4040,6 +4047,7 @@ lib/R/library/cluster/R-ex/flower.R lib/R/library/cluster/R-ex/lower.to.upper.tri.inds.R lib/R/library/cluster/R-ex/mona.R lib/R/library/cluster/R-ex/pam.R +lib/R/library/cluster/R-ex/pam.object.R lib/R/library/cluster/R-ex/plot.agnes.R lib/R/library/cluster/R-ex/plot.diana.R lib/R/library/cluster/R-ex/plot.partition.R @@ -5267,6 +5275,7 @@ lib/R/library/nlme/DESCRIPTION lib/R/library/nlme/INDEX lib/R/library/nlme/Meta/Rd.rds lib/R/library/nlme/Meta/data.rds +lib/R/library/nlme/NAMESPACE lib/R/library/nlme/R-ex/ACF.R lib/R/library/nlme/R-ex/ACF.gls.R lib/R/library/nlme/R-ex/ACF.lme.R @@ -5354,14 +5363,10 @@ lib/R/library/nlme/R-ex/augPred.R lib/R/library/nlme/R-ex/balancedGrouped.R lib/R/library/nlme/R-ex/bdf.R lib/R/library/nlme/R-ex/coef.corStruct.R -lib/R/library/nlme/R-ex/coef.gls.R lib/R/library/nlme/R-ex/coef.gnls.R lib/R/library/nlme/R-ex/coef.lmList.R lib/R/library/nlme/R-ex/coef.lme.R lib/R/library/nlme/R-ex/coef.modelStruct.R -lib/R/library/nlme/R-ex/coef.pdCompSymm.R -lib/R/library/nlme/R-ex/coef.pdDiag.R -lib/R/library/nlme/R-ex/coef.pdIdent.R lib/R/library/nlme/R-ex/coef.pdMat.R lib/R/library/nlme/R-ex/coef.reStruct.R lib/R/library/nlme/R-ex/coef.varFunc.R @@ -5390,26 +5395,13 @@ lib/R/library/nlme/R-ex/corSpher.R lib/R/library/nlme/R-ex/corSymm.R lib/R/library/nlme/R-ex/ergoStool.R lib/R/library/nlme/R-ex/fdHess.R -lib/R/library/nlme/R-ex/fitted.gls.R -lib/R/library/nlme/R-ex/fitted.gnls.R lib/R/library/nlme/R-ex/fitted.lmList.R lib/R/library/nlme/R-ex/fitted.lme.R lib/R/library/nlme/R-ex/fixed.effects.R lib/R/library/nlme/R-ex/fixef.lmList.R -lib/R/library/nlme/R-ex/fixef.lme.R -lib/R/library/nlme/R-ex/formula.corStruct.R -lib/R/library/nlme/R-ex/formula.gls.R -lib/R/library/nlme/R-ex/formula.gnls.R -lib/R/library/nlme/R-ex/formula.groupedData.R -lib/R/library/nlme/R-ex/formula.lmList.R -lib/R/library/nlme/R-ex/formula.lme.R -lib/R/library/nlme/R-ex/formula.modelStruct.R -lib/R/library/nlme/R-ex/formula.nlme.R -lib/R/library/nlme/R-ex/formula.nlsList.R lib/R/library/nlme/R-ex/formula.pdBlocked.R lib/R/library/nlme/R-ex/formula.pdMat.R lib/R/library/nlme/R-ex/formula.reStruct.R -lib/R/library/nlme/R-ex/formula.varFunc.R lib/R/library/nlme/R-ex/gapply.R lib/R/library/nlme/R-ex/getCovariate.R lib/R/library/nlme/R-ex/getCovariate.corStruct.R @@ -5429,10 +5421,6 @@ lib/R/library/nlme/R-ex/getGroups.lme.R lib/R/library/nlme/R-ex/getGroups.varFunc.R lib/R/library/nlme/R-ex/getGroupsFormula.R lib/R/library/nlme/R-ex/getResponse.R -lib/R/library/nlme/R-ex/getResponse.data.frame.R -lib/R/library/nlme/R-ex/getResponse.gls.R -lib/R/library/nlme/R-ex/getResponse.lmList.R -lib/R/library/nlme/R-ex/getResponse.lme.R lib/R/library/nlme/R-ex/getResponseFormula.R lib/R/library/nlme/R-ex/getVarCov.R lib/R/library/nlme/R-ex/gls.R @@ -5449,7 +5437,6 @@ lib/R/library/nlme/R-ex/intervals.lmList.R lib/R/library/nlme/R-ex/intervals.lme.R lib/R/library/nlme/R-ex/isBalanced.R lib/R/library/nlme/R-ex/isInitialized.R -lib/R/library/nlme/R-ex/isInitialized.reStruct.R lib/R/library/nlme/R-ex/lmList.R lib/R/library/nlme/R-ex/lmList.groupedData.R lib/R/library/nlme/R-ex/lme.R @@ -5462,7 +5449,6 @@ lib/R/library/nlme/R-ex/logDet.corStruct.R lib/R/library/nlme/R-ex/logDet.pdMat.R lib/R/library/nlme/R-ex/logDet.reStruct.R lib/R/library/nlme/R-ex/logLik.corStruct.R -lib/R/library/nlme/R-ex/logLik.gls.R lib/R/library/nlme/R-ex/logLik.gnls.R lib/R/library/nlme/R-ex/logLik.lmList.R lib/R/library/nlme/R-ex/logLik.lme.R @@ -5513,24 +5499,8 @@ lib/R/library/nlme/R-ex/predict.gnls.R lib/R/library/nlme/R-ex/predict.lmList.R lib/R/library/nlme/R-ex/predict.lme.R lib/R/library/nlme/R-ex/predict.nlme.R -lib/R/library/nlme/R-ex/print.anova.lme.R -lib/R/library/nlme/R-ex/print.corStruct.R -lib/R/library/nlme/R-ex/print.gls.R -lib/R/library/nlme/R-ex/print.groupedData.R -lib/R/library/nlme/R-ex/print.lmList.R -lib/R/library/nlme/R-ex/print.lme.R -lib/R/library/nlme/R-ex/print.modelStruct.R -lib/R/library/nlme/R-ex/print.pdMat.R -lib/R/library/nlme/R-ex/print.reStruct.R -lib/R/library/nlme/R-ex/print.summary.corStruct.R -lib/R/library/nlme/R-ex/print.summary.gls.R -lib/R/library/nlme/R-ex/print.summary.lmList.R -lib/R/library/nlme/R-ex/print.summary.lme.R -lib/R/library/nlme/R-ex/print.summary.modelStruct.R lib/R/library/nlme/R-ex/print.summary.pdMat.R -lib/R/library/nlme/R-ex/print.summary.varFunc.R lib/R/library/nlme/R-ex/print.varFunc.R -lib/R/library/nlme/R-ex/pruneLevels.R lib/R/library/nlme/R-ex/qqnorm.gls.R lib/R/library/nlme/R-ex/qqnorm.lme.R lib/R/library/nlme/R-ex/quinModel.R @@ -5638,10 +5608,6 @@ lib/R/library/nlme/help/Initialize.lmeStruct lib/R/library/nlme/help/Initialize.reStruct lib/R/library/nlme/help/Initialize.varFunc lib/R/library/nlme/help/LDEsysMat -lib/R/library/nlme/help/MEEM -lib/R/library/nlme/help/MEdecomp -lib/R/library/nlme/help/MEdims -lib/R/library/nlme/help/MEestimate lib/R/library/nlme/help/Machines lib/R/library/nlme/help/MathAchSchool lib/R/library/nlme/help/MathAchieve @@ -5700,14 +5666,10 @@ lib/R/library/nlme/help/augPred lib/R/library/nlme/help/balancedGrouped lib/R/library/nlme/help/bdf lib/R/library/nlme/help/coef.corStruct -lib/R/library/nlme/help/coef.gls lib/R/library/nlme/help/coef.gnls lib/R/library/nlme/help/coef.lmList lib/R/library/nlme/help/coef.lme lib/R/library/nlme/help/coef.modelStruct -lib/R/library/nlme/help/coef.pdCompSymm -lib/R/library/nlme/help/coef.pdDiag -lib/R/library/nlme/help/coef.pdIdent lib/R/library/nlme/help/coef.pdMat lib/R/library/nlme/help/coef.reStruct lib/R/library/nlme/help/coef.varFunc @@ -5737,9 +5699,7 @@ lib/R/library/nlme/help/corSpher lib/R/library/nlme/help/corSymm lib/R/library/nlme/help/ergoStool lib/R/library/nlme/help/fdHess -lib/R/library/nlme/help/fitted.gls lib/R/library/nlme/help/fitted.glsStruct -lib/R/library/nlme/help/fitted.gnls lib/R/library/nlme/help/fitted.gnlsStruct lib/R/library/nlme/help/fitted.lmList lib/R/library/nlme/help/fitted.lme @@ -5747,20 +5707,9 @@ lib/R/library/nlme/help/fitted.lmeStruct lib/R/library/nlme/help/fitted.nlmeStruct lib/R/library/nlme/help/fixed.effects lib/R/library/nlme/help/fixef.lmList -lib/R/library/nlme/help/fixef.lme -lib/R/library/nlme/help/formula.corStruct -lib/R/library/nlme/help/formula.gls -lib/R/library/nlme/help/formula.gnls -lib/R/library/nlme/help/formula.groupedData -lib/R/library/nlme/help/formula.lmList -lib/R/library/nlme/help/formula.lme -lib/R/library/nlme/help/formula.modelStruct -lib/R/library/nlme/help/formula.nlme -lib/R/library/nlme/help/formula.nlsList lib/R/library/nlme/help/formula.pdBlocked lib/R/library/nlme/help/formula.pdMat lib/R/library/nlme/help/formula.reStruct -lib/R/library/nlme/help/formula.varFunc lib/R/library/nlme/help/gapply lib/R/library/nlme/help/getCovariate lib/R/library/nlme/help/getCovariate.corStruct @@ -5780,10 +5729,6 @@ lib/R/library/nlme/help/getGroups.lme lib/R/library/nlme/help/getGroups.varFunc lib/R/library/nlme/help/getGroupsFormula lib/R/library/nlme/help/getResponse -lib/R/library/nlme/help/getResponse.data.frame -lib/R/library/nlme/help/getResponse.gls -lib/R/library/nlme/help/getResponse.lmList -lib/R/library/nlme/help/getResponse.lme lib/R/library/nlme/help/getResponseFormula lib/R/library/nlme/help/getVarCov lib/R/library/nlme/help/gls @@ -5802,7 +5747,6 @@ lib/R/library/nlme/help/intervals.lmList lib/R/library/nlme/help/intervals.lme lib/R/library/nlme/help/isBalanced lib/R/library/nlme/help/isInitialized -lib/R/library/nlme/help/isInitialized.reStruct lib/R/library/nlme/help/lmList lib/R/library/nlme/help/lmList.groupedData lib/R/library/nlme/help/lme @@ -5817,7 +5761,6 @@ lib/R/library/nlme/help/logDet.corStruct lib/R/library/nlme/help/logDet.pdMat lib/R/library/nlme/help/logDet.reStruct lib/R/library/nlme/help/logLik.corStruct -lib/R/library/nlme/help/logLik.gls lib/R/library/nlme/help/logLik.glsStruct lib/R/library/nlme/help/logLik.gnls lib/R/library/nlme/help/logLik.gnlsStruct @@ -5830,7 +5773,6 @@ lib/R/library/nlme/help/model.matrix.reStruct lib/R/library/nlme/help/needUpdate lib/R/library/nlme/help/needUpdate.modelStruct lib/R/library/nlme/help/nlme -lib/R/library/nlme/help/nlme-internal lib/R/library/nlme/help/nlme.nlsList lib/R/library/nlme/help/nlmeControl lib/R/library/nlme/help/nlmeObject @@ -5875,24 +5817,8 @@ lib/R/library/nlme/help/predict.gnls lib/R/library/nlme/help/predict.lmList lib/R/library/nlme/help/predict.lme lib/R/library/nlme/help/predict.nlme -lib/R/library/nlme/help/print.anova.lme -lib/R/library/nlme/help/print.corStruct -lib/R/library/nlme/help/print.gls -lib/R/library/nlme/help/print.groupedData -lib/R/library/nlme/help/print.lmList -lib/R/library/nlme/help/print.lme -lib/R/library/nlme/help/print.modelStruct -lib/R/library/nlme/help/print.pdMat -lib/R/library/nlme/help/print.reStruct -lib/R/library/nlme/help/print.summary.corStruct -lib/R/library/nlme/help/print.summary.gls -lib/R/library/nlme/help/print.summary.lmList -lib/R/library/nlme/help/print.summary.lme -lib/R/library/nlme/help/print.summary.modelStruct lib/R/library/nlme/help/print.summary.pdMat -lib/R/library/nlme/help/print.summary.varFunc lib/R/library/nlme/help/print.varFunc -lib/R/library/nlme/help/pruneLevels lib/R/library/nlme/help/qqnorm.gls lib/R/library/nlme/help/qqnorm.lme lib/R/library/nlme/help/quinModel @@ -5970,10 +5896,6 @@ lib/R/library/nlme/html/Initialize.lmeStruct.html lib/R/library/nlme/html/Initialize.reStruct.html lib/R/library/nlme/html/Initialize.varFunc.html lib/R/library/nlme/html/LDEsysMat.html -lib/R/library/nlme/html/MEEM.html -lib/R/library/nlme/html/MEdecomp.html -lib/R/library/nlme/html/MEdims.html -lib/R/library/nlme/html/MEestimate.html lib/R/library/nlme/html/Machines.html lib/R/library/nlme/html/MathAchSchool.html lib/R/library/nlme/html/MathAchieve.html @@ -6032,14 +5954,10 @@ lib/R/library/nlme/html/augPred.html lib/R/library/nlme/html/balancedGrouped.html lib/R/library/nlme/html/bdf.html lib/R/library/nlme/html/coef.corStruct.html -lib/R/library/nlme/html/coef.gls.html lib/R/library/nlme/html/coef.gnls.html lib/R/library/nlme/html/coef.lmList.html lib/R/library/nlme/html/coef.lme.html lib/R/library/nlme/html/coef.modelStruct.html -lib/R/library/nlme/html/coef.pdCompSymm.html -lib/R/library/nlme/html/coef.pdDiag.html -lib/R/library/nlme/html/coef.pdIdent.html lib/R/library/nlme/html/coef.pdMat.html lib/R/library/nlme/html/coef.reStruct.html lib/R/library/nlme/html/coef.varFunc.html @@ -6069,9 +5987,7 @@ lib/R/library/nlme/html/corSpher.html lib/R/library/nlme/html/corSymm.html lib/R/library/nlme/html/ergoStool.html lib/R/library/nlme/html/fdHess.html -lib/R/library/nlme/html/fitted.gls.html lib/R/library/nlme/html/fitted.glsStruct.html -lib/R/library/nlme/html/fitted.gnls.html lib/R/library/nlme/html/fitted.gnlsStruct.html lib/R/library/nlme/html/fitted.lmList.html lib/R/library/nlme/html/fitted.lme.html @@ -6079,20 +5995,9 @@ lib/R/library/nlme/html/fitted.lmeStruct.html lib/R/library/nlme/html/fitted.nlmeStruct.html lib/R/library/nlme/html/fixed.effects.html lib/R/library/nlme/html/fixef.lmList.html -lib/R/library/nlme/html/fixef.lme.html -lib/R/library/nlme/html/formula.corStruct.html -lib/R/library/nlme/html/formula.gls.html -lib/R/library/nlme/html/formula.gnls.html -lib/R/library/nlme/html/formula.groupedData.html -lib/R/library/nlme/html/formula.lmList.html -lib/R/library/nlme/html/formula.lme.html -lib/R/library/nlme/html/formula.modelStruct.html -lib/R/library/nlme/html/formula.nlme.html -lib/R/library/nlme/html/formula.nlsList.html 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