3 files changed, 2234 insertions, 1629 deletions

diff --git a/math/R/Makefile b/math/R/Makefile
index 51bddb7d6ece..85d7324976c5 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -1,13 +1,13 @@
-# New ports collection makefile for:   R (letter)
-# Version required:    R-0.62.2
-# Date created:                Tue Jun 23 07:36:55 EST 1998
-# Whom:                        Maurice Castro <maurice@serc.rmit.edu.au>
+# New ports collection makefile for:	R (letter)
+# Version required:		R-0.64.2
+# Date created:			Tue Jun 23 07:36:55 EST 1998
+# Whom:				Maurice Castro <maurice@serc.rmit.edu.au>
 #
 # $FreeBSD$
 #
 
-DISTNAME=	R-0.62.2
-PKGNAME=	R-${PAPERSIZE}-0.62.2
+DISTNAME=	R-0.64.2
+PKGNAME=	R-${PAPERSIZE}-0.64.2
 CATEGORIES=	math
 MASTER_SITES=	http://lib.stat.cmu.edu/R/CRAN/src/base/ \
 		ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \
@@ -38,27 +38,11 @@ PAPERSIZE?=	letter
 
 ALL_TARGET=all help html
 
-MAN1=	R.1 Rdconv.1
+MAN1=	R.1 Rd2txt.1 Rdconv.1
+MLINKS=	Rdconv.1 Sd2Rd.1 \
+	Rdconv.1 Rdindex.1
 
 test:
 	@(cd ${WRKSRC}; make test-All)
 
-do-install:
-	${INSTALL_MAN} ${WRKSRC}/R.1 ${PREFIX}/man/man1
-	${INSTALL_MAN} ${WRKSRC}/Rdconv.1 ${PREFIX}/man/man1
-	${SED} 's:PREFIX:${PREFIX}:;s:DEFAULTPAPER:${PAPERSIZE}:' ${FILESDIR}/R > ${PREFIX}/bin/R
-	(cd ${WRKSRC}; find . -type d -exec ${CHMOD} a+rx \{\} \; )
-	(cd ${WRKSRC}; find . -type f -exec ${CHMOD} a+r \{\} \; )
-	${CHMOD} a+x ${PREFIX}/bin/R
-	${MKDIR} ${PREFIX}/share/R
-	${MKDIR} ${PREFIX}/share/R/bin
-	${INSTALL_PROGRAM} ${WRKSRC}/bin/R.binary ${PREFIX}/share/R/bin
-	(cd ${WRKSRC}; tar cpf - afm ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - etc ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - doc ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - include ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - library ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - demos ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - cmd ) | (cd ${PREFIX}/share/R; tar xpf - )
-
 .include <bsd.port.mk>
diff --git a/math/R/distinfo b/math/R/distinfo
index fe6ae1f6747b..d219cfcdbf3c 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1 +1 @@
-MD5 (R-0.62.2.tgz) = 3e3359d8fcda053a7c2ebf06fc8ef550
+MD5 (R-0.64.2.tgz) = a25197e6ed875628de6bb9fc6ce34fe4
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index 91f2aea0057a..1cde11b6aa73 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -1,1604 +1,2225 @@
-@exec mkdir %D/share/R
-@exec mkdir %D/share/R/afm
-@exec mkdir %D/share/R/bin
-@exec mkdir %D/share/R/cmd
-@exec mkdir %D/share/R/demos
-@exec mkdir %D/share/R/demos/dynload
-@exec mkdir %D/share/R/demos/graphics
-@exec mkdir %D/share/R/demos/language
-@exec mkdir %D/share/R/demos/models
-@exec mkdir %D/share/R/demos/nlm
-@exec mkdir %D/share/R/doc
-@exec mkdir %D/share/R/doc/html
-@exec mkdir %D/share/R/doc/html/search
-@exec mkdir %D/share/R/doc/manual
-@exec mkdir %D/share/R/etc
-@exec mkdir %D/share/R/etc/Rdoc
-@exec mkdir %D/share/R/etc/older-stuff
-@exec mkdir %D/share/R/etc/undoc
-@exec mkdir %D/share/R/include
-@exec mkdir %D/share/R/library
-@exec mkdir %D/share/R/library/base
-@exec mkdir %D/share/R/library/base/R
-@exec mkdir %D/share/R/library/base/data
-@exec mkdir %D/share/R/library/base/help
-@exec mkdir %D/share/R/library/base/html
-@exec mkdir %D/share/R/library/base/latex
-@exec mkdir %D/share/R/library/eda
-@exec mkdir %D/share/R/library/eda/R
-@exec mkdir %D/share/R/library/eda/help
-@exec mkdir %D/share/R/library/eda/html
-@exec mkdir %D/share/R/library/eda/latex
-@exec mkdir %D/share/R/library/eda/libs
-@exec mkdir %D/share/R/library/mva
-@exec mkdir %D/share/R/library/mva/R
-@exec mkdir %D/share/R/library/mva/help
-@exec mkdir %D/share/R/library/mva/html
-@exec mkdir %D/share/R/library/mva/latex
-@exec mkdir %D/share/R/library/mva/libs
-@exec mkdir %D/share/R/library/stepfun
-@exec mkdir %D/share/R/library/stepfun/R
-@exec mkdir %D/share/R/library/stepfun/help
-@exec mkdir %D/share/R/library/stepfun/html
-@exec mkdir %D/share/R/library/stepfun/latex
 bin/R
-share/R/afm/AvantB
-share/R/afm/AvantBO
-share/R/afm/AvantD
-share/R/afm/AvantDO
-share/R/afm/BookD
-share/R/afm/BookDI
-share/R/afm/BookL
-share/R/afm/BookLI
-share/R/afm/Cour
-share/R/afm/CourB
-share/R/afm/CourBO
-share/R/afm/CourO
-share/R/afm/Helv
-share/R/afm/HelvB
-share/R/afm/HelvBO
-share/R/afm/HelvN
-share/R/afm/HelvNB
-share/R/afm/HelvNBO
-share/R/afm/HelvNO
-share/R/afm/HelvO
-share/R/afm/Makefile
-share/R/afm/NCSchlB
-share/R/afm/NCSchlBI
-share/R/afm/NCSchlI
-share/R/afm/NCSchlR
-share/R/afm/PalatB
-share/R/afm/PalatBI
-share/R/afm/PalatI
-share/R/afm/PalatO
-share/R/afm/PalatR
-share/R/afm/Symbol
-share/R/afm/TimesB
-share/R/afm/TimesBI
-share/R/afm/TimesI
-share/R/afm/TimesO
-share/R/afm/TimesR
-share/R/afm/ZapfCMI
-share/R/afm/ZapfD
-share/R/bin/R.binary
-share/R/cmd/filename
-share/R/cmd/fwf2table
-share/R/cmd/fwf2table.in
-share/R/cmd/help
-share/R/cmd/loadpath
-share/R/cmd/pager
-share/R/demos/Makefile
-share/R/demos/dynload/Makefile
-share/R/demos/dynload/Makefile.in
-share/R/demos/dynload/README
-share/R/demos/dynload/zero.R
-share/R/demos/dynload/zero.c
-share/R/demos/graphics/graphics.R
-share/R/demos/graphics/image.R
-share/R/demos/language/is-things.R
-share/R/demos/language/recursion.R
-share/R/demos/language/scoping.R
-share/R/demos/models/glm-v+r.R
-share/R/demos/models/lm+glm.R
-share/R/demos/nlm/valley.R
-share/R/doc/KEYWORDS
-share/R/doc/Makefile
-share/R/doc/keyword-test
-share/R/doc/keyword-test.in
-share/R/doc/html/about.html
-share/R/doc/html/authors.html
-share/R/doc/html/function.html
-share/R/doc/html/index.html
-share/R/doc/html/left.jpg
-share/R/doc/html/logo.jpg
-share/R/doc/html/logosm.jpg
-share/R/doc/html/packages.html
-share/R/doc/html/resource.html
-share/R/doc/html/right.jpg
-share/R/doc/html/template.html
-share/R/doc/html/thanks.html
-share/R/doc/html/up.jpg
-share/R/doc/html/search/IndexEntry.class
-share/R/doc/html/search/IndexEntry.java
-share/R/doc/html/search/IndexStream.class
-share/R/doc/html/search/IndexStream.java
-share/R/doc/html/search/IndexTable.class
-share/R/doc/html/search/IndexTable.java
-share/R/doc/html/search/SearchEngine.class
-share/R/doc/html/search/SearchEngine.html
-share/R/doc/html/search/SearchEngine.java
-share/R/doc/html/search/Tracer.class
-share/R/doc/html/search/Tracer.java
-share/R/doc/html/search/Value.class
-share/R/doc/html/search/Value.java
-share/R/doc/html/search/index.txt
-share/R/doc/manual/ABOUT.tex
-share/R/doc/manual/EQN
-share/R/doc/manual/Makefile
-share/R/doc/manual/Man.tex
-share/R/doc/manual/Man0.tex
-share/R/doc/manual/Pkg-end.tex
-share/R/doc/manual/Pkg-start.tex
-share/R/doc/manual/Rd.sty
-share/R/doc/manual/lib2tex
-share/R/doc/manual/lib2tex.in
-share/R/doc/manual/plotmath.tex
-share/R/doc/manual/writing-Rd.tex
-share/R/etc/COMPILE
-share/R/etc/COMPILE.in
-share/R/etc/INSTALL
-share/R/etc/INSTALL.in
-share/R/etc/Makeconf
-share/R/etc/Makeconf.in
-share/R/etc/Makefile
-share/R/etc/REMOVE
-share/R/etc/REMOVE.in
-share/R/etc/Rd.files
-share/R/etc/Rd2dvi
-share/R/etc/Rd2txt
-share/R/etc/Rdconv
-share/R/etc/Rdconv.in
-share/R/etc/Rdconvlib.pl
-share/R/etc/Rdindex
-share/R/etc/Rdindex.in
-share/R/etc/Rman2Rd
-share/R/etc/Rman2Rd.in
-share/R/etc/SHLIB
-share/R/etc/SHLIB.in
-share/R/etc/Sd2Rd
-share/R/etc/Sd2Rd.in
-share/R/etc/build-alldocs
-share/R/etc/build-allhelp
-share/R/etc/build-allhtml
-share/R/etc/build-alllatex
-share/R/etc/build-help
-share/R/etc/build-help.in
-share/R/etc/buildlib.pl
-share/R/etc/colors.big
-share/R/etc/colors.small
-share/R/etc/config.guess
-share/R/etc/config.sub
-share/R/etc/help.pretty
-share/R/etc/help.pretty.in
-share/R/etc/html-layout.pl
-share/R/etc/html2dos
-share/R/etc/html2dos.in
-share/R/etc/install-sh
-share/R/etc/stamp-docs
-share/R/etc/stamp-help
-share/R/etc/stamp-html
-share/R/etc/stamp-latex
-share/R/etc/tasks
-share/R/etc/test-things.Rd
-share/R/etc/Rdoc/Rdconv.pl
-share/R/etc/Rdoc/Rdoc.pm
-share/R/etc/Rdoc/Rdtest.pl
-share/R/etc/older-stuff/doc2EX
-share/R/etc/older-stuff/doc2dvi
-share/R/etc/older-stuff/doc2html
-share/R/etc/older-stuff/doc2latex
-share/R/etc/older-stuff/doc2ms
-share/R/etc/older-stuff/extract-Examples
-share/R/etc/older-stuff/help.format
-share/R/etc/older-stuff/help.index
-share/R/etc/older-stuff/help.pretty
-share/R/etc/older-stuff/help.pretty.perl
-share/R/etc/older-stuff/help.update
-share/R/etc/undoc/Makefile
-share/R/etc/undoc/NoEx
-share/R/etc/undoc/R-funs
-share/R/etc/undoc/extrAllExamp
-share/R/etc/undoc/extrExamp
-share/R/etc/undoc/getDoc
-share/R/etc/undoc/getFunctions
-share/R/etc/undoc/getnames
-share/R/include/Blas.h
-share/R/include/Fortran.h
-share/R/include/Linpack.h
-share/R/include/Platform.h
-share/R/include/S.h
-share/R/include/S_compat.h
-share/R/include/f2c.h
-share/R/library/LibIndex
-share/R/library/base/INDEX
-share/R/library/base/TITLE
-share/R/library/base/R/Rprofile
-share/R/library/base/R/base
-share/R/library/base/data/acid.R
-share/R/library/base/data/airmiles.R
-share/R/library/base/data/airquality.tab
-share/R/library/base/data/anscombe.R
-share/R/library/base/data/attenu.R
-share/R/library/base/data/attitude.R
-share/R/library/base/data/bees.R
-share/R/library/base/data/cars.R
-share/R/library/base/data/chickwts.R
-share/R/library/base/data/consume.R
-share/R/library/base/data/crimes.tab
-share/R/library/base/data/deaths.R
-share/R/library/base/data/discoveries.R
-share/R/library/base/data/esoph.R
-share/R/library/base/data/eurodist.R
-share/R/library/base/data/faithful.R
-share/R/library/base/data/freeny.R
-share/R/library/base/data/index.doc
-share/R/library/base/data/infert.R
-share/R/library/base/data/insects.R
-share/R/library/base/data/iris.R
-share/R/library/base/data/iris3.R
-share/R/library/base/data/islands.R
-share/R/library/base/data/judges.R
-share/R/library/base/data/longley.R
-share/R/library/base/data/mtcars.R
-share/R/library/base/data/nhtemp.R
-share/R/library/base/data/phones.R
-share/R/library/base/data/pigs.R
-share/R/library/base/data/plants.R
-share/R/library/base/data/precip.R
-share/R/library/base/data/presidents.R
-share/R/library/base/data/pressure.R
-share/R/library/base/data/quakes.R
-share/R/library/base/data/randu.R
-share/R/library/base/data/rivers.R
-share/R/library/base/data/savings.R
-share/R/library/base/data/sleep.R
-share/R/library/base/data/stackloss.R
-share/R/library/base/data/state.R
-share/R/library/base/data/sunspots.R
-share/R/library/base/data/swiss.tab
-share/R/library/base/data/trees.R
-share/R/library/base/data/uspop.R
-share/R/library/base/data/volcano.R
-share/R/library/base/data/warpbreaks.R
-share/R/library/base/data/women.R
-share/R/library/base/help/00Titles
-share/R/library/base/help/Alias
-share/R/library/base/help/AnIndex
-share/R/library/base/help/Arithmetic
-share/R/library/base/help/Beta
-share/R/library/base/help/Binomial
-share/R/library/base/help/COMPILE
-share/R/library/base/help/Cauchy
-share/R/library/base/help/Chisquare
-share/R/library/base/help/Comparison
-share/R/library/base/help/Constants
-share/R/library/base/help/Control
-share/R/library/base/help/Defunct
-share/R/library/base/help/Deprecated
-share/R/library/base/help/Devices
-share/R/library/base/help/Exponential
-share/R/library/base/help/Extract
-share/R/library/base/help/Extremes
-share/R/library/base/help/F
-share/R/library/base/help/Foreign
-share/R/library/base/help/GammaDist
-share/R/library/base/help/Geometric
-share/R/library/base/help/Hyperbolic
-share/R/library/base/help/Hypergeometric
-share/R/library/base/help/INSTALL
-share/R/library/base/help/IQR
-share/R/library/base/help/Internal
-share/R/library/base/help/Log
-share/R/library/base/help/Logic
-share/R/library/base/help/Logistic
-share/R/library/base/help/Lognormal
-share/R/library/base/help/Machine
-share/R/library/base/help/Math
-share/R/library/base/help/NA
-share/R/library/base/help/NChisquare
-share/R/library/base/help/NULL
-share/R/library/base/help/NegBinomial
-share/R/library/base/help/Normal
-share/R/library/base/help/Poisson
-share/R/library/base/help/Primitive
-share/R/library/base/help/REMOVE
-share/R/library/base/help/RHOME
-share/R/library/base/help/Random
-share/R/library/base/help/Round
-share/R/library/base/help/SHLIB
-share/R/library/base/help/Special
-share/R/library/base/help/TDist
-share/R/library/base/help/Trig
-share/R/library/base/help/Tukey
-share/R/library/base/help/Uniform
-share/R/library/base/help/Version
-share/R/library/base/help/Weibull
-share/R/library/base/help/Wilcoxon
-share/R/library/base/help/abbreviate
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-share/R/library/base/help/airmiles
-share/R/library/base/help/airquality
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-share/R/library/base/help/all
-share/R/library/base/help/allnames
-share/R/library/base/help/anova
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-share/R/library/base/help/chol2inv
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-share/R/library/base/help/discoveries
-share/R/library/base/help/do.call
-share/R/library/base/help/dotplot
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