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authorBrendan Fabeny <bf@FreeBSD.org>2011-05-07 03:29:59 +0000
committerBrendan Fabeny <bf@FreeBSD.org>2011-05-07 03:29:59 +0000
commitf08fd58316b82fa2a71f4f60235324ec73fd239d (patch)
tree20e4e7386cab19fe15c0d95d4dd1c5bfa6d076e1 /math
parent0446896d04d241cd9b649a02b5858713327e62c6 (diff)
downloadports-f08fd58316b82fa2a71f4f60235324ec73fd239d.tar.gz
ports-f08fd58316b82fa2a71f4f60235324ec73fd239d.zip
Notes
Diffstat (limited to 'math')
-rw-r--r--math/R-cran-RSvgDevice/Makefile2
-rw-r--r--math/R-cran-Zelig/Makefile2
-rw-r--r--math/R-cran-car/Makefile2
-rw-r--r--math/R-cran-coda/Makefile1
-rw-r--r--math/R-cran-gpclib/Makefile2
-rw-r--r--math/R-cran-inline/Makefile1
-rw-r--r--math/R-cran-mvtnorm/Makefile1
-rw-r--r--math/R-cran-psych/Makefile1
-rw-r--r--math/R-cran-sm/Makefile1
-rw-r--r--math/R-cran-sp/Makefile1
-rw-r--r--math/R/Makefile117
-rw-r--r--math/R/distinfo4
-rw-r--r--math/R/files/patch-tests__reg-tests-1b.R19
-rw-r--r--math/R/pkg-plist116
-rw-r--r--math/p5-Statistics-R/Makefile1
-rw-r--r--math/rkward-kde4/Makefile12
-rw-r--r--math/rkward-kde4/files/patch-rkward_rbackend_FindR.cmake11
-rw-r--r--math/rkward-kde4/pkg-plist2
-rw-r--r--math/rkward/Makefile8
-rw-r--r--math/rkward/pkg-plist1
-rw-r--r--math/rpy/Makefile10
-rw-r--r--math/rpy/pkg-plist2
-rw-r--r--math/rpy2/Makefile10
23 files changed, 245 insertions, 82 deletions
diff --git a/math/R-cran-RSvgDevice/Makefile b/math/R-cran-RSvgDevice/Makefile
index 4d05e5e2a9f3..83d4d31c7da2 100644
--- a/math/R-cran-RSvgDevice/Makefile
+++ b/math/R-cran-RSvgDevice/Makefile
@@ -7,7 +7,7 @@
PORTNAME= RSvgDevice
PORTVERSION= 0.6.4.1
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-Zelig/Makefile b/math/R-cran-Zelig/Makefile
index c4f049a337aa..bec5cdfc48ee 100644
--- a/math/R-cran-Zelig/Makefile
+++ b/math/R-cran-Zelig/Makefile
@@ -7,7 +7,7 @@
PORTNAME= Zelig
DISTVERSION= 3.4-8
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-car/Makefile b/math/R-cran-car/Makefile
index a8cee97b667d..127ad0278710 100644
--- a/math/R-cran-car/Makefile
+++ b/math/R-cran-car/Makefile
@@ -7,7 +7,7 @@
PORTNAME= car
DISTVERSION= 1.2-16
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-coda/Makefile b/math/R-cran-coda/Makefile
index ae9c0a478a27..ab37161faa1b 100644
--- a/math/R-cran-coda/Makefile
+++ b/math/R-cran-coda/Makefile
@@ -7,6 +7,7 @@
PORTNAME= coda
DISTVERSION= 0.14-2
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-gpclib/Makefile b/math/R-cran-gpclib/Makefile
index 8d422b3f888f..f054f658ad52 100644
--- a/math/R-cran-gpclib/Makefile
+++ b/math/R-cran-gpclib/Makefile
@@ -7,7 +7,7 @@
PORTNAME= gpclib
DISTVERSION= 1.5-1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-inline/Makefile b/math/R-cran-inline/Makefile
index be12e2d87ddc..7350fa6e83ed 100644
--- a/math/R-cran-inline/Makefile
+++ b/math/R-cran-inline/Makefile
@@ -7,6 +7,7 @@
PORTNAME= inline
PORTVERSION= 0.3.8
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-mvtnorm/Makefile b/math/R-cran-mvtnorm/Makefile
index 1c5aef7fd45c..45567f1878f8 100644
--- a/math/R-cran-mvtnorm/Makefile
+++ b/math/R-cran-mvtnorm/Makefile
@@ -7,6 +7,7 @@
PORTNAME= mvtnorm
PORTVERSION= 0.9.96
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/math/R-cran-psych/Makefile b/math/R-cran-psych/Makefile
index cdf31c0b90e7..b55a30a7eb4f 100644
--- a/math/R-cran-psych/Makefile
+++ b/math/R-cran-psych/Makefile
@@ -7,6 +7,7 @@
PORTNAME= psych
PORTVERSION= 1.0.94
+PORTREVISION= 1
CATEGORIES= math science
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/math/R-cran-sm/Makefile b/math/R-cran-sm/Makefile
index ad2c6494e9d5..8aece8664b64 100644
--- a/math/R-cran-sm/Makefile
+++ b/math/R-cran-sm/Makefile
@@ -7,6 +7,7 @@
PORTNAME= sm
DISTVERSION= 2.2-4.1
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-sp/Makefile b/math/R-cran-sp/Makefile
index 2eb12c975e42..1f8337329d55 100644
--- a/math/R-cran-sp/Makefile
+++ b/math/R-cran-sp/Makefile
@@ -7,6 +7,7 @@
PORTNAME= sp
PORTVERSION= 0.9.78
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/math/R/Makefile b/math/R/Makefile
index 19c99a476812..156742dccc6d 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -7,7 +7,7 @@
#
PORTNAME?= R
-PORTVERSION= 2.12.2
+PORTVERSION= 2.13.0
CATEGORIES= math lang
MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \
ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@@ -36,54 +36,74 @@ BUILD_WRKSRC= ${WRKSRC}/src/nmath/standalone
CONFIGURE_ARGS = --disable-nls --with-ICU=no --with-cairo=no --with-iconv=no \
--with-jpeglib=no --with-libpng=no --with-readline=no \
--with-tcltk=no --with-x=no --without-libintl-prefix
-USE_PERL5_BUILD= yes
+PLIST_SUB= RMATH_SOVERSION="${RMATH_SOVERSION}"
+USE_LDCONFIG= yes
.else # LIBRMATH_SLAVEPORT
ALL_TARGET= all
CONFIGURE_ARGS = --enable-memory-profiling rdocdir=${DOCSDIR} \
--with-system-bzlib --with-system-zlib
CONFIGURE_ENV= FCFLAGS="${FFLAGS}" \
INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" \
- LDFLAGS="${LDFLAGS}" \
R_LD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}" TAR="${TAR}"
-INSTALL_TARGET= install install-libR
MAN1= R.1 Rscript.1
OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \
GHOSTSCRIPT "Enable the [dev2]bitmap() graphics devices" on \
ICU "Improve collation in multibyte locales with ICU" on \
JPEG "Enable the jpeg() graphics device" on \
LETTER_PAPER "Use US Letter paper" off \
+ LIBR "Install libR, and a dynamically-linked, rather than a static R" on \
NLS "Build with NLS support" on \
+ PANGOCAIRO "Enable cairo and pango in the X11() graphics device" on \
PCRE_PORT "Use PCRE port instead of bundled source" on \
PNG "Enable the png() graphics device" on \
- STATIC_LIBR "Build a static, rather than a shared, libR" off \
TCLTK "Use Tcl/Tk (for the tcltk package)" on \
THREADS "Build a multithreaded R" on \
X11 "Enable the X11() graphics device" on \
DVI_MANUALS "Install DVI manuals (requires TeX)" off \
INFO_MANUALS "Install GNU info manuals" on
-R_LD_LIBRARY_PATH= ${LOCALBASE}/lib/${_GCC_BUILD_DEPENDS}
+PLIST_SUB= R_SOVERSION="${R_SOVERSION}" \
+ RBLAS_SOVERSION="${RBLAS_SOVERSION}" \
+ RLAPACK_SOVERSION="${RLAPACK_SOVERSION}"
+R_LD_LIBRARY_PATH= ${LOCALBASE}/lib/${_GCC_BUILD_DEPENDS}:${LOCALBASE}/lib
USE_ICONV= yes
-USE_PERL5= yes
+USE_LDCONFIG= ${PREFIX}/lib/R/lib
+WANT_GNOME= yes
.endif # LIBRMATH_SLAVEPORT
+CONFIGURE_ENV += LDFLAGS="${LDFLAGS}"
GNU_CONFIGURE= yes
MAKE_JOBS_UNSAFE= yes
+R_SOVERSION= 0
+RBLAS_SOVERSION= 2
+RLAPACK_SOVERSION= 4
+RMATH_SOVERSION= 0
USE_FORTRAN= yes
-USE_LDCONFIG= yes
+USE_PERL5_BUILD= yes
.include <bsd.port.pre.mk>
+.if ${ARCH} == "sparc64" || ${ARCH} == "powerpc64"
+PICFLAG?= -fPIC
+.else
+PICFLAG?= -fpic
+.endif
+.for flag in LD CXXLD
+CONFIGURE_ENV += SHLIB_${flag}FLAGS="${PICFLAG}"
+.endfor
+
.if !defined(LIBRMATH_SLAVEPORT)
.if defined(WITH_ATLAS)
LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
-CONFIGURE_ARGS+= --with-blas="-lf77blas -latlas"
-# A workaround to prevent hangs during the build.
-.if ${ARCH} != "i386"
-CONFIGURE_ARGS+= --with-lapack="-lalapack -lcblas"
+BLAS?= "-lf77blas -latlas"
+LAPACK?= "-lalapack -lcblas"
+.else
+BLAS?= no
+LAPACK?= no
.endif
+CONFIGURE_ARGS+= --with-blas="${BLAS}" --with-lapack="${LAPACK}"
+.if ${BLAS} == "no" || ${LAPACK} == "no"
+PLIST_SUB+= LAPACK=""
.else
-LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas \
- lapack.4:${PORTSDIR}/math/lapack
-CONFIGURE_ARGS+= --with-blas="-lblas" --with-lapack="-llapack -lblas"
+PLIST_SUB+= LAPACK="@comment "
.endif
.if !defined(WITHOUT_GHOSTSCRIPT)
@@ -108,6 +128,13 @@ CONFIGURE_ARGS+= --with-jpeglib
CONFIGURE_ENV += R_PAPERSIZE=letter
.endif
+.if defined(WITHOUT_LIBR)
+PLIST_SUB+= LIBR="@comment "
+.else
+CONFIGURE_ARGS+= --enable-R-shlib
+PLIST_SUB+= LIBR=""
+.endif
+
.if !defined(WITHOUT_NLS)
USE_GETTEXT= yes
PLIST_SUB+= NLS=""
@@ -116,6 +143,12 @@ CONFIGURE_ARGS+= --disable-nls
PLIST_SUB+= NLS="@comment "
.endif
+.if defined(WITHOUT_PANGOCAIRO)
+CONFIGURE_ARGS+= --with-cairo=no
+.else
+USE_GNOME+= pango
+.endif
+
.if defined(WITHOUT_PCRE_PORT)
CONFIGURE_ARGS+= --without-system-pcre
.else
@@ -130,14 +163,6 @@ LIB_DEPENDS+= png.6:${PORTSDIR}/graphics/png
CONFIGURE_ARGS+= --with-libpng
.endif
-.if defined(WITH_STATIC_LIBR)
-CONFIGURE_ARGS+= --enable-R-static-lib
-PLIST_SUB+= STATIC_LIBR="" SHARED_LIBR="@comment "
-.else
-CONFIGURE_ARGS+= --enable-R-shlib
-PLIST_SUB+= STATIC_LIBR="@comment " SHARED_LIBR=""
-.endif
-
.if defined(WITHOUT_TCLTK)
CONFIGURE_ARGS+= --without-tcltk
PLIST_SUB+= TCLTK="@comment "
@@ -162,7 +187,7 @@ CONFIGURE_ARGS+= --without-x
PLIST_SUB+= X11="@comment "
.else
CONFIGURE_ARGS+= --with-x
-USE_XORG= x11 xt
+USE_XORG= x11 xmu xt
PLIST_SUB+= X11=""
.endif
@@ -202,19 +227,31 @@ post-patch:
done)
.endif
+.if defined(WITH_LIBR)
+post-build:
+ @(cd ${WRKSRC}/src/main; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
+ ${MAKE_ARGS} libR.a)
+
+.endif
+
check regression-test test: build
- @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
- ${MAKE_ARGS} check)
+ @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} LANGUAGE=en \
+ LC_COLLATE=C LC_TIME=C ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} \
+ check)
check-all: build
- @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
- ${MAKE_ARGS} check-all)
+ @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} LANGUAGE=en \
+ LC_COLLATE=C LC_TIME=C ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} \
+ check-all)
post-install:
-.if !defined(WITH_STATIC_LIBR)
- ${MV} ${PREFIX}/lib/libR.so ${PREFIX}/lib/libR.so.0
- ${LN} -sf ${PREFIX}/lib/libR.so.0 ${PREFIX}/lib/libR.so
+.if defined(WITH_LIBR)
+ @${INSTALL_LIB} ${WRKSRC}/src/main/libR.a ${PREFIX}/lib/R/lib
.endif
+.for L in R Rblas Rlapack
+ @(cd ${PREFIX}/lib/R/lib; if [ -f lib${L}.so ] ; then \
+ ${LN} -sf lib${L}.so lib${L}.so.${${L:U}_SOVERSION} ; fi)
+.endfor
.if defined(WITH_INFO_MANUALS) && !defined(NOPORTDOCS)
@(cd ${WRKSRC}/doc/manual; \
for infofile in ${INFO}; do \
@@ -224,14 +261,16 @@ post-install:
.else # !LIBRMATH_SLAVEPORT
do-install:
- ${INSTALL_DATA} ${WRKSRC}/src/include/Rmath.h ${PREFIX}/include
- ${INSTALL_DATA} ${BUILD_WRKSRC}/libRmath.a ${PREFIX}/lib
- ${INSTALL_DATA} ${BUILD_WRKSRC}/libRmath.so ${PREFIX}/lib/libRmath.so.0
- (cd ${PREFIX}/lib; ${LN} -sf libRmath.so.0 libRmath.so)
-
-test: install
- @(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
- ${MAKE_ARGS} test && ${BUILD_WRKSRC}/test)
+ @${INSTALL_DATA} ${WRKSRC}/src/include/Rmath.h ${PREFIX}/include
+ @${INSTALL_LIB} ${BUILD_WRKSRC}/libRmath.a ${PREFIX}/lib
+ @${INSTALL_LIB} ${BUILD_WRKSRC}/libRmath.so \
+ ${PREFIX}/lib/libRmath.so.${RMATH_SOVERSION}
+ @(cd ${PREFIX}/lib; ${LN} -sf libRmath.so.${RMATH_SOVERSION} libRmath.so)
+
+check regression-test test: build
+ @(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} LANGUAGE=en \
+ LC_COLLATE=C LC_TIME=C ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} test; \
+ ${SETENV} LD_LIBRARY_PATH="${BUILD_WRKSRC}" ${BUILD_WRKSRC}/test)
.endif # !LIBRMATH_SLAVEPORT
diff --git a/math/R/distinfo b/math/R/distinfo
index e52d0f652cee..c42183ae75b8 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,2 +1,2 @@
-SHA256 (R-2.12.2.tar.gz) = 869ac219844671e4139aa4ddf5a272c27e26b1250bc427af3877fb237a5a9dbb
-SIZE (R-2.12.2.tar.gz) = 21120720
+SHA256 (R-2.13.0.tar.gz) = 559213ff05a205b9d2ad7ac7abebf477fb87c1bb3f0b03febbff5aa6bd8ab811
+SIZE (R-2.13.0.tar.gz) = 21832899
diff --git a/math/R/files/patch-tests__reg-tests-1b.R b/math/R/files/patch-tests__reg-tests-1b.R
deleted file mode 100644
index b943f0215477..000000000000
--- a/math/R/files/patch-tests__reg-tests-1b.R
+++ /dev/null
@@ -1,19 +0,0 @@
---- tests/reg-tests-1b.R.orig 2010-12-22 03:50:30.000000000 -0500
-+++ tests/reg-tests-1b.R 2010-12-22 04:05:33.000000000 -0500
-@@ -1344,11 +1344,11 @@
-
- ## found from fallback test in slam 0.1-15
- ## most likely indicates an inaedquate BLAS.
--x <- matrix(c(1, 0, NA, 1), 2, 2)
--y <- matrix(c(1, 0, 0, 2, 1, 0), 3, 2)
--(z <- tcrossprod(x, y))
--stopifnot(identical(z, x %*% t(y)))
--stopifnot(is.nan(log(0) %*% 0))
-+## x <- matrix(c(1, 0, NA, 1), 2, 2)
-+## y <- matrix(c(1, 0, 0, 2, 1, 0), 3, 2)
-+## (z <- tcrossprod(x, y))
-+## stopifnot(identical(z, x %*% t(y)))
-+## stopifnot(is.nan(log(0) %*% 0))
- ## depended on the BLAS in use: some (including the reference BLAS)
- ## had z[1,3] == 0 and log(0) %*% 0 as as.matrix(0).
-
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index 9fc43678d2f5..ee2310112424 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -43,7 +43,6 @@ lib/R/bin/Rdiff
lib/R/bin/Rprof
lib/R/bin/Rscript
lib/R/bin/SHLIB
-lib/R/bin/Sd2Rd
lib/R/bin/Stangle
lib/R/bin/Sweave
lib/R/bin/build
@@ -76,6 +75,7 @@ lib/R/include/R_ext/GraphicsDevice.h
lib/R/include/R_ext/GraphicsEngine.h
lib/R/include/R_ext/Lapack.h
lib/R/include/R_ext/Linpack.h
+lib/R/include/R_ext/MathThreads.h
lib/R/include/R_ext/Memory.h
lib/R/include/R_ext/Parse.h
lib/R/include/R_ext/Print.h
@@ -101,8 +101,13 @@ lib/R/include/Rinternals.h
lib/R/include/Rmath.h
lib/R/include/Rversion.h
lib/R/include/S.h
-%%STATIC_LIBR%%lib/R/lib/libR.a
-%%SHARED_LIBR%%lib/R/lib/libR.so
+%%LIBR%%lib/R/lib/libR.a
+%%LIBR%%lib/R/lib/libR.so
+%%LIBR%%lib/R/lib/libR.so.%%R_SOVERSION%%
+%%LAPACK%%lib/R/lib/libRblas.so
+%%LAPACK%%lib/R/lib/libRblas.so.%%RBLAS_SOVERSION%%
+%%LAPACK%%lib/R/lib/libRlapack.so
+%%LAPACK%%lib/R/lib/libRlapack.so.%%RLAPACK_SOVERSION%%
lib/R/library/KernSmooth/DESCRIPTION
lib/R/library/KernSmooth/INDEX
lib/R/library/KernSmooth/LICENCE
@@ -121,6 +126,7 @@ lib/R/library/KernSmooth/help/KernSmooth.rdx
lib/R/library/KernSmooth/help/aliases.rds
lib/R/library/KernSmooth/help/paths.rds
lib/R/library/KernSmooth/html/00Index.html
+lib/R/library/KernSmooth/html/R.css
lib/R/library/KernSmooth/libs/KernSmooth.so
%%NLS%%lib/R/library/KernSmooth/po/de/LC_MESSAGES/R-KernSmooth.mo
%%NLS%%lib/R/library/KernSmooth/po/en@quot/LC_MESSAGES/R-KernSmooth.mo
@@ -148,6 +154,7 @@ lib/R/library/MASS/help/MASS.rdx
lib/R/library/MASS/help/aliases.rds
lib/R/library/MASS/help/paths.rds
lib/R/library/MASS/html/00Index.html
+lib/R/library/MASS/html/R.css
lib/R/library/MASS/libs/MASS.so
%%NLS%%lib/R/library/MASS/po/de/LC_MESSAGES/R-MASS.mo
%%NLS%%lib/R/library/MASS/po/en@quot/LC_MESSAGES/R-MASS.mo
@@ -230,6 +237,7 @@ lib/R/library/Matrix/help/Matrix.rdx
lib/R/library/Matrix/help/aliases.rds
lib/R/library/Matrix/help/paths.rds
lib/R/library/Matrix/html/00Index.html
+lib/R/library/Matrix/html/R.css
lib/R/library/Matrix/include/Matrix.h
lib/R/library/Matrix/include/Matrix_stubs.c
lib/R/library/Matrix/include/cholmod.h
@@ -239,7 +247,6 @@ lib/R/library/Matrix/libs/Matrix.so
%%NLS%%lib/R/library/Matrix/po/en@quot/LC_MESSAGES/Matrix.mo
%%NLS%%lib/R/library/Matrix/po/en@quot/LC_MESSAGES/R-Matrix.mo
lib/R/library/Matrix/test-tools.R
-lib/R/library/R.css
lib/R/library/base/CITATION
lib/R/library/base/DESCRIPTION
lib/R/library/base/INDEX
@@ -252,6 +259,7 @@ lib/R/library/base/R/Rprofile
lib/R/library/base/R/base
lib/R/library/base/R/base.rdb
lib/R/library/base/R/base.rdx
+lib/R/library/base/demo/error.catching.R
lib/R/library/base/demo/is.things.R
lib/R/library/base/demo/recursion.R
lib/R/library/base/demo/scoping.R
@@ -261,6 +269,7 @@ lib/R/library/base/help/base.rdb
lib/R/library/base/help/base.rdx
lib/R/library/base/help/paths.rds
lib/R/library/base/html/00Index.html
+lib/R/library/base/html/R.css
%%NLS%%lib/R/library/base/po/de/LC_MESSAGES/R-base.mo
%%NLS%%lib/R/library/base/po/en@quot/LC_MESSAGES/R-base.mo
%%NLS%%lib/R/library/base/po/fr/LC_MESSAGES/R-base.mo
@@ -269,6 +278,7 @@ lib/R/library/base/html/00Index.html
%%NLS%%lib/R/library/base/po/ko/LC_MESSAGES/R-base.mo
%%NLS%%lib/R/library/base/po/pt_BR/LC_MESSAGES/R-base.mo
%%NLS%%lib/R/library/base/po/ru/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/base/po/tr/LC_MESSAGES/R-base.mo
%%NLS%%lib/R/library/base/po/zh_CN/LC_MESSAGES/R-base.mo
lib/R/library/boot/CITATION
lib/R/library/boot/DESCRIPTION
@@ -292,6 +302,7 @@ lib/R/library/boot/help/boot.rdb
lib/R/library/boot/help/boot.rdx
lib/R/library/boot/help/paths.rds
lib/R/library/boot/html/00Index.html
+lib/R/library/boot/html/R.css
%%NLS%%lib/R/library/boot/po/de/LC_MESSAGES/R-boot.mo
%%NLS%%lib/R/library/boot/po/en@quot/LC_MESSAGES/R-boot.mo
%%NLS%%lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo
@@ -316,6 +327,7 @@ lib/R/library/class/help/class.rdb
lib/R/library/class/help/class.rdx
lib/R/library/class/help/paths.rds
lib/R/library/class/html/00Index.html
+lib/R/library/class/html/R.css
lib/R/library/class/libs/class.so
%%NLS%%lib/R/library/class/po/de/LC_MESSAGES/R-class.mo
%%NLS%%lib/R/library/class/po/en@quot/LC_MESSAGES/R-class.mo
@@ -342,6 +354,7 @@ lib/R/library/cluster/help/cluster.rdb
lib/R/library/cluster/help/cluster.rdx
lib/R/library/cluster/help/paths.rds
lib/R/library/cluster/html/00Index.html
+lib/R/library/cluster/html/R.css
lib/R/library/cluster/libs/cluster.so
lib/R/library/codetools/DESCRIPTION
lib/R/library/codetools/INDEX
@@ -360,6 +373,32 @@ lib/R/library/codetools/help/codetools.rdb
lib/R/library/codetools/help/codetools.rdx
lib/R/library/codetools/help/paths.rds
lib/R/library/codetools/html/00Index.html
+lib/R/library/codetools/html/R.css
+lib/R/library/compiler/DESCRIPTION
+lib/R/library/compiler/INDEX
+lib/R/library/compiler/Meta/Rd.rds
+lib/R/library/compiler/Meta/hsearch.rds
+lib/R/library/compiler/Meta/links.rds
+lib/R/library/compiler/Meta/nsInfo.rds
+lib/R/library/compiler/Meta/package.rds
+lib/R/library/compiler/NAMESPACE
+lib/R/library/compiler/R/compiler
+lib/R/library/compiler/R/compiler.rdb
+lib/R/library/compiler/R/compiler.rdx
+lib/R/library/compiler/help/AnIndex
+lib/R/library/compiler/help/aliases.rds
+lib/R/library/compiler/help/compiler.rdb
+lib/R/library/compiler/help/compiler.rdx
+lib/R/library/compiler/help/paths.rds
+lib/R/library/compiler/html/00Index.html
+lib/R/library/compiler/html/R.css
+%%NLS%%lib/R/library/compiler/po/de/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/en@quot/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/fr/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/ja/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/pt_BR/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/ru/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/zh_CN/LC_MESSAGES/R-compiler.mo
lib/R/library/datasets/DESCRIPTION
lib/R/library/datasets/INDEX
lib/R/library/datasets/Meta/Rd.rds
@@ -378,6 +417,7 @@ lib/R/library/datasets/help/datasets.rdb
lib/R/library/datasets/help/datasets.rdx
lib/R/library/datasets/help/paths.rds
lib/R/library/datasets/html/00Index.html
+lib/R/library/datasets/html/R.css
lib/R/library/foreign/COPYING
lib/R/library/foreign/DESCRIPTION
lib/R/library/foreign/INDEX
@@ -400,6 +440,7 @@ lib/R/library/foreign/help/foreign.rdb
lib/R/library/foreign/help/foreign.rdx
lib/R/library/foreign/help/paths.rds
lib/R/library/foreign/html/00Index.html
+lib/R/library/foreign/html/R.css
lib/R/library/foreign/libs/foreign.so
%%NLS%%lib/R/library/foreign/po/de/LC_MESSAGES/R-foreign.mo
%%NLS%%lib/R/library/foreign/po/de/LC_MESSAGES/foreign.mo
@@ -531,6 +572,8 @@ lib/R/library/grDevices/help/grDevices.rdb
lib/R/library/grDevices/help/grDevices.rdx
lib/R/library/grDevices/help/paths.rds
lib/R/library/grDevices/html/00Index.html
+lib/R/library/grDevices/html/R.css
+lib/R/library/grDevices/icc/srgb
lib/R/library/grDevices/libs/grDevices.so
%%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo
%%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/grDevices.mo
@@ -576,6 +619,7 @@ lib/R/library/graphics/help/graphics.rdb
lib/R/library/graphics/help/graphics.rdx
lib/R/library/graphics/help/paths.rds
lib/R/library/graphics/html/00Index.html
+lib/R/library/graphics/html/R.css
%%NLS%%lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo
%%NLS%%lib/R/library/graphics/po/en@quot/LC_MESSAGES/R-graphics.mo
%%NLS%%lib/R/library/graphics/po/fr/LC_MESSAGES/R-graphics.mo
@@ -645,6 +689,7 @@ lib/R/library/grid/help/grid.rdb
lib/R/library/grid/help/grid.rdx
lib/R/library/grid/help/paths.rds
lib/R/library/grid/html/00Index.html
+lib/R/library/grid/html/R.css
lib/R/library/grid/libs/grid.so
%%NLS%%lib/R/library/grid/po/de/LC_MESSAGES/R-grid.mo
%%NLS%%lib/R/library/grid/po/de/LC_MESSAGES/grid.mo
@@ -692,6 +737,7 @@ lib/R/library/lattice/help/lattice.rdb
lib/R/library/lattice/help/lattice.rdx
lib/R/library/lattice/help/paths.rds
lib/R/library/lattice/html/00Index.html
+lib/R/library/lattice/html/R.css
lib/R/library/lattice/libs/lattice.so
%%NLS%%lib/R/library/lattice/po/de/LC_MESSAGES/R-lattice.mo
%%NLS%%lib/R/library/lattice/po/en@quot/LC_MESSAGES/R-lattice.mo
@@ -713,6 +759,7 @@ lib/R/library/methods/help/methods.rdb
lib/R/library/methods/help/methods.rdx
lib/R/library/methods/help/paths.rds
lib/R/library/methods/html/00Index.html
+lib/R/library/methods/html/R.css
lib/R/library/methods/libs/methods.so
%%NLS%%lib/R/library/methods/po/de/LC_MESSAGES/R-methods.mo
%%NLS%%lib/R/library/methods/po/de/LC_MESSAGES/methods.mo
@@ -750,6 +797,7 @@ lib/R/library/mgcv/help/mgcv.rdb
lib/R/library/mgcv/help/mgcv.rdx
lib/R/library/mgcv/help/paths.rds
lib/R/library/mgcv/html/00Index.html
+lib/R/library/mgcv/html/R.css
lib/R/library/mgcv/libs/mgcv.so
lib/R/library/nlme/CITATION
lib/R/library/nlme/COPYING
@@ -775,6 +823,7 @@ lib/R/library/nlme/help/nlme.rdb
lib/R/library/nlme/help/nlme.rdx
lib/R/library/nlme/help/paths.rds
lib/R/library/nlme/html/00Index.html
+lib/R/library/nlme/html/R.css
lib/R/library/nlme/libs/nlme.so
lib/R/library/nlme/mlbook/README
lib/R/library/nlme/mlbook/ch04.R
@@ -813,6 +862,7 @@ lib/R/library/nnet/help/nnet.rdb
lib/R/library/nnet/help/nnet.rdx
lib/R/library/nnet/help/paths.rds
lib/R/library/nnet/html/00Index.html
+lib/R/library/nnet/html/R.css
lib/R/library/nnet/libs/nnet.so
%%NLS%%lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo
%%NLS%%lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo
@@ -839,6 +889,7 @@ lib/R/library/rpart/help/paths.rds
lib/R/library/rpart/help/rpart.rdb
lib/R/library/rpart/help/rpart.rdx
lib/R/library/rpart/html/00Index.html
+lib/R/library/rpart/html/R.css
lib/R/library/rpart/libs/rpart.so
%%NLS%%lib/R/library/rpart/po/de/LC_MESSAGES/R-rpart.mo
%%NLS%%lib/R/library/rpart/po/de/LC_MESSAGES/rpart.mo
@@ -869,6 +920,7 @@ lib/R/library/spatial/help/paths.rds
lib/R/library/spatial/help/spatial.rdb
lib/R/library/spatial/help/spatial.rdx
lib/R/library/spatial/html/00Index.html
+lib/R/library/spatial/html/R.css
lib/R/library/spatial/libs/spatial.so
%%NLS%%lib/R/library/spatial/po/de/LC_MESSAGES/R-spatial.mo
%%NLS%%lib/R/library/spatial/po/en@quot/LC_MESSAGES/R-spatial.mo
@@ -914,6 +966,7 @@ lib/R/library/splines/help/paths.rds
lib/R/library/splines/help/splines.rdb
lib/R/library/splines/help/splines.rdx
lib/R/library/splines/html/00Index.html
+lib/R/library/splines/html/R.css
lib/R/library/splines/libs/splines.so
%%NLS%%lib/R/library/splines/po/de/LC_MESSAGES/R-splines.mo
%%NLS%%lib/R/library/splines/po/de/LC_MESSAGES/splines.mo
@@ -948,6 +1001,7 @@ lib/R/library/stats4/help/paths.rds
lib/R/library/stats4/help/stats4.rdb
lib/R/library/stats4/help/stats4.rdx
lib/R/library/stats4/html/00Index.html
+lib/R/library/stats4/html/R.css
%%NLS%%lib/R/library/stats4/po/de/LC_MESSAGES/R-stats4.mo
%%NLS%%lib/R/library/stats4/po/en@quot/LC_MESSAGES/R-stats4.mo
%%NLS%%lib/R/library/stats4/po/fr/LC_MESSAGES/R-stats4.mo
@@ -956,6 +1010,7 @@ lib/R/library/stats4/html/00Index.html
%%NLS%%lib/R/library/stats4/po/ko/LC_MESSAGES/R-stats4.mo
%%NLS%%lib/R/library/stats4/po/pt_BR/LC_MESSAGES/R-stats4.mo
%%NLS%%lib/R/library/stats4/po/ru/LC_MESSAGES/R-stats4.mo
+%%NLS%%lib/R/library/stats4/po/tr/LC_MESSAGES/R-stats4.mo
%%NLS%%lib/R/library/stats4/po/zh_CN/LC_MESSAGES/R-stats4.mo
lib/R/library/stats/COPYRIGHTS.modreg
lib/R/library/stats/DESCRIPTION
@@ -981,6 +1036,7 @@ lib/R/library/stats/help/paths.rds
lib/R/library/stats/help/stats.rdb
lib/R/library/stats/help/stats.rdx
lib/R/library/stats/html/00Index.html
+lib/R/library/stats/html/R.css
lib/R/library/stats/libs/stats.so
%%NLS%%lib/R/library/stats/po/de/LC_MESSAGES/R-stats.mo
%%NLS%%lib/R/library/stats/po/de/LC_MESSAGES/stats.mo
@@ -998,6 +1054,7 @@ lib/R/library/stats/libs/stats.so
%%NLS%%lib/R/library/stats/po/pt_BR/LC_MESSAGES/stats.mo
%%NLS%%lib/R/library/stats/po/ru/LC_MESSAGES/R-stats.mo
%%NLS%%lib/R/library/stats/po/ru/LC_MESSAGES/stats.mo
+%%NLS%%lib/R/library/stats/po/tr/LC_MESSAGES/R-stats.mo
%%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/R-stats.mo
%%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/stats.mo
lib/R/library/survival/COPYING
@@ -1025,6 +1082,7 @@ lib/R/library/survival/help/paths.rds
lib/R/library/survival/help/survival.rdb
lib/R/library/survival/help/survival.rdx
lib/R/library/survival/html/00Index.html
+lib/R/library/survival/html/R.css
lib/R/library/survival/libs/survival.so
lib/R/library/tcltk/DESCRIPTION
lib/R/library/tcltk/INDEX
@@ -1060,6 +1118,7 @@ lib/R/library/tcltk/help/paths.rds
lib/R/library/tcltk/help/tcltk.rdb
lib/R/library/tcltk/help/tcltk.rdx
lib/R/library/tcltk/html/00Index.html
+lib/R/library/tcltk/html/R.css
%%TCLTK%%lib/R/library/tcltk/libs/tcltk.so
%%NLS%%lib/R/library/tcltk/po/de/LC_MESSAGES/R-tcltk.mo
%%NLS%%lib/R/library/tcltk/po/de/LC_MESSAGES/tcltk.mo
@@ -1094,6 +1153,7 @@ lib/R/library/tools/help/paths.rds
lib/R/library/tools/help/tools.rdb
lib/R/library/tools/help/tools.rdx
lib/R/library/tools/html/00Index.html
+lib/R/library/tools/html/R.css
lib/R/library/tools/libs/tools.so
%%NLS%%lib/R/library/tools/po/de/LC_MESSAGES/R-tools.mo
%%NLS%%lib/R/library/tools/po/de/LC_MESSAGES/tools.mo
@@ -1111,6 +1171,7 @@ lib/R/library/tools/libs/tools.so
%%NLS%%lib/R/library/tools/po/pt_BR/LC_MESSAGES/tools.mo
%%NLS%%lib/R/library/tools/po/ru/LC_MESSAGES/R-tools.mo
%%NLS%%lib/R/library/tools/po/ru/LC_MESSAGES/tools.mo
+%%NLS%%lib/R/library/tools/po/tr/LC_MESSAGES/R-tools.mo
%%NLS%%lib/R/library/tools/po/zh_CN/LC_MESSAGES/R-tools.mo
%%NLS%%lib/R/library/tools/po/zh_CN/LC_MESSAGES/tools.mo
lib/R/library/utils/DESCRIPTION
@@ -1120,17 +1181,24 @@ lib/R/library/utils/Meta/hsearch.rds
lib/R/library/utils/Meta/links.rds
lib/R/library/utils/Meta/nsInfo.rds
lib/R/library/utils/Meta/package.rds
+lib/R/library/utils/Meta/vignette.rds
lib/R/library/utils/NAMESPACE
lib/R/library/utils/R/utils
lib/R/library/utils/R/utils.rdb
lib/R/library/utils/R/utils.rdx
lib/R/library/utils/Sweave/Sweave-test-1.Rnw
+lib/R/library/utils/Sweave/example-1.Rnw
+lib/R/library/utils/doc/Sweave.R
+lib/R/library/utils/doc/Sweave.Rnw
+lib/R/library/utils/doc/Sweave.pdf
+lib/R/library/utils/doc/index.html
lib/R/library/utils/help/AnIndex
lib/R/library/utils/help/aliases.rds
lib/R/library/utils/help/paths.rds
lib/R/library/utils/help/utils.rdb
lib/R/library/utils/help/utils.rdx
lib/R/library/utils/html/00Index.html
+lib/R/library/utils/html/R.css
lib/R/library/utils/iconvlist
lib/R/library/utils/misc/exDIF.csv
lib/R/library/utils/misc/exDIF.dif
@@ -1141,6 +1209,7 @@ lib/R/library/utils/misc/exDIF.dif
%%NLS%%lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo
%%NLS%%lib/R/library/utils/po/pt_BR/LC_MESSAGES/R-utils.mo
%%NLS%%lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo
+%%NLS%%lib/R/library/utils/po/tr/LC_MESSAGES/R-utils.mo
%%NLS%%lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo
%%X11%%lib/R/modules/R_X11.so
lib/R/modules/internet.so
@@ -1176,6 +1245,7 @@ lib/R/share/licenses/license.db
%%NLS%%lib/R/share/locale/nn/LC_MESSAGES/R.mo
%%NLS%%lib/R/share/locale/pt_BR/LC_MESSAGES/R.mo
%%NLS%%lib/R/share/locale/ru/LC_MESSAGES/R.mo
+%%NLS%%lib/R/share/locale/tr/LC_MESSAGES/R.mo
%%NLS%%lib/R/share/locale/zh_CN/LC_MESSAGES/R.mo
%%NLS%%lib/R/share/locale/zh_TW/LC_MESSAGES/R.mo
lib/R/share/make/basepkg.mk
@@ -1198,9 +1268,7 @@ lib/R/share/texmf/tex/latex/omscmtt.fd
lib/R/share/texmf/tex/latex/ts1aer.fd
lib/R/share/texmf/tex/latex/ts1aett.fd
lib/R/share/texmf/tex/latex/upquote.sty
-libdata/pkgconfig/libR.pc
-%%SHARED_LIBR%%lib/libR.so
-%%SHARED_LIBR%%lib/libR.so.0
+%%LIBR%%libdata/pkgconfig/libR.pc
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi
%%DOCSDIR%%/manual/R-FAQ.html
%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi
@@ -1234,6 +1302,8 @@ libdata/pkgconfig/libR.pc
%%NLS%%@dirrm lib/R/share/locale/zh_TW
%%NLS%%@dirrm lib/R/share/locale/zh_CN/LC_MESSAGES
%%NLS%%@dirrm lib/R/share/locale/zh_CN
+%%NLS%%@dirrm lib/R/share/locale/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/share/locale/tr
%%NLS%%@dirrm lib/R/share/locale/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/share/locale/ru
%%NLS%%@dirrm lib/R/share/locale/pt_BR/LC_MESSAGES
@@ -1267,6 +1337,8 @@ libdata/pkgconfig/libR.pc
@dirrm lib/R/modules
%%NLS%%@dirrm lib/R/library/utils/po/zh_CN/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/utils/po/zh_CN
+%%NLS%%@dirrm lib/R/library/utils/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/utils/po/tr
%%NLS%%@dirrm lib/R/library/utils/po/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/utils/po/ru
%%NLS%%@dirrm lib/R/library/utils/po/pt_BR/LC_MESSAGES
@@ -1285,12 +1357,15 @@ libdata/pkgconfig/libR.pc
@dirrm lib/R/library/utils/misc
@dirrm lib/R/library/utils/html
@dirrm lib/R/library/utils/help
+@dirrm lib/R/library/utils/doc
@dirrm lib/R/library/utils/Sweave
@dirrm lib/R/library/utils/R
@dirrm lib/R/library/utils/Meta
@dirrm lib/R/library/utils
%%NLS%%@dirrm lib/R/library/tools/po/zh_CN/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/tools/po/zh_CN
+%%NLS%%@dirrm lib/R/library/tools/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/tools/po/tr
%%NLS%%@dirrm lib/R/library/tools/po/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/tools/po/ru
%%NLS%%@dirrm lib/R/library/tools/po/pt_BR/LC_MESSAGES
@@ -1351,6 +1426,8 @@ libdata/pkgconfig/libR.pc
@dirrm lib/R/library/survival
%%NLS%%@dirrm lib/R/library/stats/po/zh_CN/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/stats/po/zh_CN
+%%NLS%%@dirrm lib/R/library/stats/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/stats/po/tr
%%NLS%%@dirrm lib/R/library/stats/po/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/stats/po/ru
%%NLS%%@dirrm lib/R/library/stats/po/pt_BR/LC_MESSAGES
@@ -1376,6 +1453,8 @@ libdata/pkgconfig/libR.pc
@dirrm lib/R/library/stats/Meta
%%NLS%%@dirrm lib/R/library/stats4/po/zh_CN/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/stats4/po/zh_CN
+%%NLS%%@dirrm lib/R/library/stats4/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/stats4/po/tr
%%NLS%%@dirrm lib/R/library/stats4/po/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/stats4/po/ru
%%NLS%%@dirrm lib/R/library/stats4/po/pt_BR/LC_MESSAGES
@@ -1599,6 +1678,7 @@ libdata/pkgconfig/libR.pc
%%NLS%%@dirrm lib/R/library/grDevices/po/de
%%NLS%%@dirrm lib/R/library/grDevices/po
@dirrm lib/R/library/grDevices/libs
+@dirrm lib/R/library/grDevices/icc
@dirrm lib/R/library/grDevices/html
@dirrm lib/R/library/grDevices/help
@dirrm lib/R/library/grDevices/enc
@@ -1626,6 +1706,26 @@ libdata/pkgconfig/libR.pc
@dirrm lib/R/library/datasets/R
@dirrm lib/R/library/datasets/Meta
@dirrm lib/R/library/datasets
+%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN
+%%NLS%%@dirrm lib/R/library/compiler/po/ru/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/ru
+%%NLS%%@dirrm lib/R/library/compiler/po/pt_BR/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/pt_BR
+%%NLS%%@dirrm lib/R/library/compiler/po/ja/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/ja
+%%NLS%%@dirrm lib/R/library/compiler/po/fr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/fr
+%%NLS%%@dirrm lib/R/library/compiler/po/en@quot/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/en@quot
+%%NLS%%@dirrm lib/R/library/compiler/po/de/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/de
+%%NLS%%@dirrm lib/R/library/compiler/po
+@dirrm lib/R/library/compiler/html
+@dirrm lib/R/library/compiler/help
+@dirrm lib/R/library/compiler/R
+@dirrm lib/R/library/compiler/Meta
+@dirrm lib/R/library/compiler
@dirrm lib/R/library/codetools/html
@dirrm lib/R/library/codetools/help
@dirrm lib/R/library/codetools/R
@@ -1668,6 +1768,8 @@ libdata/pkgconfig/libR.pc
@dirrm lib/R/library/boot
%%NLS%%@dirrm lib/R/library/base/po/zh_CN/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/base/po/zh_CN
+%%NLS%%@dirrm lib/R/library/base/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/base/po/tr
%%NLS%%@dirrm lib/R/library/base/po/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/base/po/ru
%%NLS%%@dirrm lib/R/library/base/po/pt_BR/LC_MESSAGES
diff --git a/math/p5-Statistics-R/Makefile b/math/p5-Statistics-R/Makefile
index 00485423f7fc..4518a81d99b4 100644
--- a/math/p5-Statistics-R/Makefile
+++ b/math/p5-Statistics-R/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Statistics-R
PORTVERSION= 0.08
+PORTREVISION= 1
CATEGORIES= math perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:BRICAS
diff --git a/math/rkward-kde4/Makefile b/math/rkward-kde4/Makefile
index 4da0dc857bf5..c5c22521a47b 100644
--- a/math/rkward-kde4/Makefile
+++ b/math/rkward-kde4/Makefile
@@ -7,7 +7,7 @@
PORTNAME= rkward
PORTVERSION= 0.5.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Current_Stable_Releases
PKGNAMESUFFIX= -kde4
@@ -15,8 +15,9 @@ PKGNAMESUFFIX= -kde4
MAINTAINER= thierry@FreeBSD.org
COMMENT= IDE/GUI for the R-project
-LIB_DEPENDS= R.0:${PORTSDIR}/math/R
-RUN_DEPENDS= seq2:${PORTSDIR}/misc/seq2
+BUILD_DEPENDS= ${LOCALBASE}/bin/R:${PORTSDIR}/math/R
+RUN_DEPENDS= ${LOCALBASE}/bin/R:${PORTSDIR}/math/R \
+ seq2:${PORTSDIR}/misc/seq2
LICENSE= GPLv2
@@ -64,13 +65,16 @@ pre-configure:
${REINPLACE_CMD} -e 's|ADD_SUBDIRECTORY(po)|#ADD_SUBDIRECTORY(po)|' \
${WRKSRC}/CMakeLists.txt
.endif
+ @(if [ ! -e ${LOCALBASE}/lib/R/lib/libR.so ] ; then \
+ ${ECHO_MSG} "==> ${PKGNAME} requires math/R to be built WITH_LIBR" ; \
+ exit 1; fi)
post-install:
${TOUCH} ${LOCALBASE}/lib/R/library/rkwardtests/doc/.empty
.if defined(MAINTAINER_MODE)
regression-test: install
- @${ECHO_MSG} "To pass the tests, somme CRAN packages like R2HTML"
+ @${ECHO_MSG} "To pass the tests, some CRAN packages like R2HTML"
@${ECHO_MSG} "must be installed."
(cd ${WRKSRC}/tests && make plugintests)
.endif
diff --git a/math/rkward-kde4/files/patch-rkward_rbackend_FindR.cmake b/math/rkward-kde4/files/patch-rkward_rbackend_FindR.cmake
new file mode 100644
index 000000000000..3bbf01b81de8
--- /dev/null
+++ b/math/rkward-kde4/files/patch-rkward_rbackend_FindR.cmake
@@ -0,0 +1,11 @@
+--- rkward/rbackend/FindR.cmake.orig 2011-02-23 06:43:20.000000000 -0500
++++ rkward/rbackend/FindR.cmake 2011-05-03 01:42:49.000000000 -0400
+@@ -99,7 +99,7 @@
+ # needed when linking to Rlapack on linux for some unknown reason.
+ # apparently not needed on windows (let's see, when it comes back to bite us, though)
+ # and compiling on windows is hard enough even without requiring libgfortran, too.
+- SET(R_USED_LIBS ${R_USED_LIBS} gfortran)
++ #SET(R_USED_LIBS ${R_USED_LIBS} gfortran)
+ ENDIF(WIN32 OR APPLE)
+ ENDIF(NOT LIBR_LAPACK)
+
diff --git a/math/rkward-kde4/pkg-plist b/math/rkward-kde4/pkg-plist
index d0c8030f7304..1a4305c7e755 100644
--- a/math/rkward-kde4/pkg-plist
+++ b/math/rkward-kde4/pkg-plist
@@ -590,6 +590,7 @@ lib/R/library/rkward/help/paths.rds
lib/R/library/rkward/help/rkward.rdb
lib/R/library/rkward/help/rkward.rdx
lib/R/library/rkward/html/00Index.html
+lib/R/library/rkward/html/R.css
lib/R/library/rkwardtests/DESCRIPTION
lib/R/library/rkwardtests/INDEX
lib/R/library/rkwardtests/Meta/Rd.rds
@@ -608,6 +609,7 @@ lib/R/library/rkwardtests/help/paths.rds
lib/R/library/rkwardtests/help/rkwardtests.rdb
lib/R/library/rkwardtests/help/rkwardtests.rdx
lib/R/library/rkwardtests/html/00Index.html
+lib/R/library/rkwardtests/html/R.css
@dirrm lib/R/library/rkwardtests/html
@dirrm lib/R/library/rkwardtests/help
@dirrm lib/R/library/rkwardtests/doc
diff --git a/math/rkward/Makefile b/math/rkward/Makefile
index 733cd405f646..64e7d4818bee 100644
--- a/math/rkward/Makefile
+++ b/math/rkward/Makefile
@@ -7,7 +7,7 @@
PORTNAME= rkward
DISTVERSION= 0.4.9a
-PORTREVISION= 9
+PORTREVISION= 10
PORTEPOCH= 3
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Historical_Releases/0.4.x_and_earlier/0.4.9a%20%28KDE3%29
@@ -15,7 +15,8 @@ MASTER_SITES= SF/${PORTNAME}/Historical_Releases/0.4.x_and_earlier/0.4.9a%20%28K
MAINTAINER= thierry@FreeBSD.org
COMMENT= IDE/GUI for the R-project
-LIB_DEPENDS= R.0:${PORTSDIR}/math/R
+BUILD_DEPENDS= ${LOCALBASE}/bin/R:${PORTSDIR}/math/R
+RUN_DEPENDS= ${LOCALBASE}/bin/R:${PORTSDIR}/math/R
CONFLICTS= rkward-kde4-0.5.*
@@ -57,5 +58,8 @@ pre-configure:
${REINPLACE_CMD} -e 's|SUBDIRS = rkward po|SUBDIRS = rkward|' \
${WRKSRC}/Makefile.in
.endif
+ @(if [ ! -e ${LOCALBASE}/lib/R/lib/libR.so ] ; then \
+ ${ECHO_MSG} "==> ${PKGNAME} requires math/R to be built WITH_LIBR" ; \
+ exit 1; fi)
.include <bsd.port.mk>
diff --git a/math/rkward/pkg-plist b/math/rkward/pkg-plist
index a25198738eb2..ac08da5655d9 100644
--- a/math/rkward/pkg-plist
+++ b/math/rkward/pkg-plist
@@ -487,6 +487,7 @@ lib/R/library/rkward/help/paths.rds
lib/R/library/rkward/help/rkward.rdb
lib/R/library/rkward/help/rkward.rdx
lib/R/library/rkward/html/00Index.html
+lib/R/library/rkward/html/R.css
lib/R/library/rkward/libs/rkward.so
@dirrm lib/R/library/rkward/libs
@dirrm lib/R/library/rkward/html
diff --git a/math/rpy/Makefile b/math/rpy/Makefile
index de7e2d5b8f1f..4922e11f5a16 100644
--- a/math/rpy/Makefile
+++ b/math/rpy/Makefile
@@ -8,7 +8,7 @@
PORTNAME= rpy
PORTVERSION= 1.0.3
-PORTREVISION= 16
+PORTREVISION= 17
CATEGORIES= math
MASTER_SITES= SF
@@ -17,7 +17,8 @@ COMMENT= Python interface to the R Programming Language
BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
R:${PORTSDIR}/math/R
-RUN_DEPENDS= ${BUILD_DEPENDS}
+RUN_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
+ R:${PORTSDIR}/math/R
USE_PYTHON= yes
USE_PYDISTUTILS= yes
@@ -27,4 +28,9 @@ post-patch:
@${REINPLACE_CMD} -e 's,^statichere ,,' ${WRKSRC}/src/rpymodule.c
@${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|g' ${WRKSRC}/setup.py
+pre-configure:
+ @(if [ ! -e ${LOCALBASE}/lib/R/lib/libR.so ] ; then \
+ ${ECHO_MSG} "==> ${PKGNAME} requires math/R to be built WITH_LIBR" ; \
+ exit 1; fi)
+
.include <bsd.port.mk>
diff --git a/math/rpy/pkg-plist b/math/rpy/pkg-plist
index 0db2a8caaa68..ba1e10aa6eba 100644
--- a/math/rpy/pkg-plist
+++ b/math/rpy/pkg-plist
@@ -1,4 +1,4 @@
-%%PYTHON_SITELIBDIR%%/_rpy2122.so
+%%PYTHON_SITELIBDIR%%/_rpy2130.so
%%PYTHON_SITELIBDIR%%/rpy.py
%%PYTHON_SITELIBDIR%%/rpy.pyc
%%PYTHON_SITELIBDIR%%/rpy.pyo
diff --git a/math/rpy2/Makefile b/math/rpy2/Makefile
index 9b2e38584cdb..1b84100091ad 100644
--- a/math/rpy2/Makefile
+++ b/math/rpy2/Makefile
@@ -8,7 +8,7 @@
PORTNAME= rpy2
PORTVERSION= 2.1.3
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
MASTER_SITES= CHEESESHOP \
SF
@@ -18,7 +18,8 @@ COMMENT= Python interface to the R Programming Language
BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
R:${PORTSDIR}/math/R
-RUN_DEPENDS= ${BUILD_DEPENDS}
+RUN_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \
+ R:${PORTSDIR}/math/R
USE_PYTHON= yes
USE_PYDISTUTILS= yes
@@ -26,4 +27,9 @@ USE_PYDISTUTILS= yes
post-patch:
@${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|g' ${WRKSRC}/setup.py
+pre-configure:
+ @(if [ ! -e ${LOCALBASE}/lib/R/lib/libR.so ] ; then \
+ ${ECHO_MSG} "==> ${PKGNAME} requires math/R to be built WITH_LIBR" ; \
+ exit 1; fi)
+
.include <bsd.port.mk>