1 files changed, 128 insertions, 0 deletions

diff --git a/science/afni/Makefile b/science/afni/Makefile
new file mode 100644
index 000000000000..741ad1c928fc
--- /dev/null
+++ b/science/afni/Makefile
@@ -0,0 +1,128 @@
+############################################################################
+# Ports collection Makefile for:   afni
+# Date created:        11 Jan 2005
+# Whom:                bacon@smithers.neuro.mcw.edu
+#
+# $FreeBSD$
+#
+
+############################################################################
+# www.neuro.mcw.edu has the latest source distribution from which this port
+# is built.  It will be updated as time permits.
+#
+# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
+# contain the latest source release.  If this port is not up to date,
+# you can download the latest sources and build manually using
+# Makefile.BSD, which is included in the source distribution.
+
+PORTNAME=	afni
+PORTVERSION=	2005.12.30.0934
+CATEGORIES=	science biology graphics
+MASTER_SITES=	http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/
+DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 \
+		Makefile.FreeBSD_PORT TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD
+DIST_SUBDIR=	AFNI
+EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz
+
+MAINTAINER=	bacon@smithers.neuro.mcw.edu
+COMMENT=	Advanced Functional Neuro Imaging
+
+RUN_DEPENDS=	cjpeg:${PORTSDIR}/graphics/jpeg \
+		mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
+		whirlgif:${PORTSDIR}/graphics/whirlgif
+
+USE_GETTEXT=	yes
+USE_GMAKE=	yes
+USE_ICONV=	yes
+USE_MOTIF=	yes
+MAKE_ENV=	CC="${CC}"
+
+WRKSRC=		${WRKDIR}/afni_src
+MAKEFILE=	Makefile.FreeBSD_PORT
+ALL_TARGET=	vastness suma
+
+SUB_FILES=	pkg-message
+
+###########################################################################
+# Install parameters
+
+MAN1=	afni.1
+
+# these need not to be stripped
+SCRIPTS=\
+	@2dwarper \
+	@4Daverage \
+	@AfniOrient2RAImap \
+	@AfniOrientSign \
+	@Align_Centers \
+	@Center_Distance \
+	@CheckForAfniDset \
+	@CommandGlobb \
+	@DTI_studio_reposition \
+	@FromRAI \
+	@GetAfniOrient \
+	@GetAfniPrefix \
+	@GetAfniView \
+	@NoExt \
+	@Purify_1D \
+	@RenamePanga \
+	@SUMA_AlignToExperiment \
+	@SUMA_Make_Spec_FS \
+	@SUMA_Make_Spec_SF \
+	@ToRAI \
+	@UpdateAfni \
+	@VolCenter \
+	@align_partial_oblique \
+	@auto_align \
+	@auto_tlrc \
+	@clip_volume \
+	@fix_FSsphere \
+	@make_stim_file \
+	@parse_afni_name \
+	@parse_name \
+	suma_change_spec \
+
+PLIST_FILES+=	${SCRIPTS:S|^|bin/|}
+
+INSTALL_WRKSRC=	${WRKSRC}/BSD
+INSTALL_TEMP=	${WRKSRC}/Backup.BSD
+
+post-extract:
+	${CP} -f ${DISTDIR}/${DIST_SUBDIR}/Makefile.FreeBSD_PORT ${WRKSRC}
+
+do-install:
+	${MKDIR} ${DATADIR} ${INSTALL_TEMP}
+	@${MV} ${INSTALL_WRKSRC}/libf2c.a ${INSTALL_TEMP}
+	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.so ${INSTALL_WRKSRC}/*.a \
+		${PREFIX}/lib
+	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.h \
+		${PREFIX}/include
+	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.jpg ${INSTALL_WRKSRC}/*.txt \
+		${DATADIR}
+	@${MV}	${INSTALL_WRKSRC}/*.so \
+		${INSTALL_WRKSRC}/*.a \
+		${INSTALL_WRKSRC}/*.h \
+		${INSTALL_WRKSRC}/*.jpg \
+		${INSTALL_WRKSRC}/*.txt \
+	 	${INSTALL_WRKSRC}/cjpeg \
+		${INSTALL_WRKSRC}/djpeg \
+		${INSTALL_WRKSRC}/mpeg_encode \
+		${INSTALL_WRKSRC}/whirlgif \
+		${INSTALL_TEMP}
+.for f in ${SCRIPTS}
+		${INSTALL_SCRIPT} ${INSTALL_WRKSRC}/${f} ${PREFIX}/bin
+		@${MV} ${INSTALL_WRKSRC}/${f} ${INSTALL_TEMP}
+.endfor
+	${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin
+	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
+	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${PREFIX}/man/man1
+	@${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC}
+.if !defined(NOPORTDOCS)
+	${MKDIR} ${DOCSDIR}
+	${INSTALL_DATA} ${WRKDIR}/afni_doc/* ${DOCSDIR}
+.endif
+
+post-install:
+	@${CAT} ${WRKDIR}/pkg-message
+
+.include <bsd.port.mk>