diff options
| author | Martin Wilke <miwi@FreeBSD.org> | 2013-03-24 16:27:23 +0000 |
|---|---|---|
| committer | Martin Wilke <miwi@FreeBSD.org> | 2013-03-24 16:27:23 +0000 |
| commit | 5e0dac513e152d08d284b399b0cdaa370580c882 (patch) | |
| tree | 4ca7b3d4dc080f4a3993e11667d97356bce11d74 /science/gromacs | |
| parent | cdfbf346e791f849350649e87820776ffcae9dbf (diff) | |
| download | ports-5e0dac513e152d08d284b399b0cdaa370580c882.tar.gz ports-5e0dac513e152d08d284b399b0cdaa370580c882.zip | |
Notes
Diffstat (limited to 'science/gromacs')
| -rw-r--r-- | science/gromacs/Makefile | 6 | ||||
| -rw-r--r-- | science/gromacs/distinfo | 4 | ||||
| -rw-r--r-- | science/gromacs/pkg-plist | 15 |
3 files changed, 16 insertions, 9 deletions
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile index 97a8b6c0dc7b..392d45a79756 100644 --- a/science/gromacs/Makefile +++ b/science/gromacs/Makefile @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= gromacs -PORTVERSION= 4.6 +PORTVERSION= 4.6.1 CATEGORIES= science MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ @@ -22,10 +22,10 @@ GSL_DESC= Extra analysis using math/gsl MPICH_DESC= MPI support using net/mpich2 OMPI_DESC= MPI support using net/openmpi +USES= cmake USE_FORTRAN= yes USE_PERL5= yes USE_PKGCONFIG= build -USES= cmake CMAKE_ARGS= -DBLAS_LIBRARIES:FILEPATH="${BLAS_LIBS}" \ -DLAPACK_LIBRARIES:FILEPATH="${LAPACK_LIBS}" USE_LDCONFIG= yes @@ -127,7 +127,7 @@ post-patch: @${FIND} ${WRKSRC} -name "CMakeLists.txt" | ${XARGS} \ ${REINPLACE_CMD} -e \ 's|share/man|man| ; \ - s|-lpthread|${PTHREAD_LIBS}| ; \ + s|-lpthread|-pthread| ; \ /pkgconfig/s|LIB_INSTALL_DIR}|CMAKE_INSTALL_PREFIX}/libdata|' @${FIND} ${WRKSRC} -name "GMXRC.*" | ${XARGS} ${REINPLACE_CMD} -e \ 's|LDLIB/pkgconfig|LDLIB/../libdata/pkgconfig| ; \ diff --git a/science/gromacs/distinfo b/science/gromacs/distinfo index 4f462ee9288e..200af9e5de96 100644 --- a/science/gromacs/distinfo +++ b/science/gromacs/distinfo @@ -1,2 +1,2 @@ -SHA256 (gromacs-4.6.tar.gz) = f695ea814b10cb9afa8d69241fed703c6e20156bab96ed4b25f817ad85a8dbde -SIZE (gromacs-4.6.tar.gz) = 10098687 +SHA256 (gromacs-4.6.1.tar.gz) = a0514b2a04ecac7461a67fc8edefa2b8eeaf22a25cd61c3348042dd077b077e6 +SIZE (gromacs-4.6.1.tar.gz) = 9975315 diff --git a/science/gromacs/pkg-plist b/science/gromacs/pkg-plist index 09aa9094f735..21af82da2853 100644 --- a/science/gromacs/pkg-plist +++ b/science/gromacs/pkg-plist @@ -343,13 +343,13 @@ include/gromacs/xdrf.h include/gromacs/xtcio.h include/gromacs/xvgr.h lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6 +lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8 lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6 +lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8 lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6 +lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8 lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so -lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6 +lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8 libdata/pkgconfig/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.pc libdata/pkgconfig/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.pc libdata/pkgconfig/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.pc @@ -431,6 +431,8 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.pc %%DATADIR%%/html/online/g_dipoles.html %%DATADIR%%/html/online/g_disre.html %%DATADIR%%/html/online/g_dist.html +%%DATADIR%%/html/online/g_dos.html +%%DATADIR%%/html/online/g_dyecoupl.html %%DATADIR%%/html/online/g_dyndom.html %%DATADIR%%/html/online/g_enemat.html %%DATADIR%%/html/online/g_energy.html @@ -440,6 +442,8 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.pc %%DATADIR%%/html/online/g_hbond.html %%DATADIR%%/html/online/g_helix.html %%DATADIR%%/html/online/g_helixorient.html +%%DATADIR%%/html/online/g_hydorder.html +%%DATADIR%%/html/online/g_kinetics.html %%DATADIR%%/html/online/g_lie.html %%DATADIR%%/html/online/g_mdmat.html %%DATADIR%%/html/online/g_membed.html @@ -449,7 +453,9 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.pc %%DATADIR%%/html/online/g_nmeig.html %%DATADIR%%/html/online/g_nmens.html %%DATADIR%%/html/online/g_nmtraj.html +%%DATADIR%%/html/online/g_options.html %%DATADIR%%/html/online/g_order.html +%%DATADIR%%/html/online/g_pme_error.html %%DATADIR%%/html/online/g_polystat.html %%DATADIR%%/html/online/g_potential.html %%DATADIR%%/html/online/g_principal.html @@ -462,6 +468,7 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.pc %%DATADIR%%/html/online/g_rotacf.html %%DATADIR%%/html/online/g_rotmat.html %%DATADIR%%/html/online/g_saltbr.html +%%DATADIR%%/html/online/g_sans.html %%DATADIR%%/html/online/g_sas.html %%DATADIR%%/html/online/g_select.html %%DATADIR%%/html/online/g_sgangle.html |