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authorMaho Nakata <maho@FreeBSD.org>2013-01-08 06:53:51 +0000
committerMaho Nakata <maho@FreeBSD.org>2013-01-08 06:53:51 +0000
commit8d7dab397845220868fed24fd403dc59661ddf10 (patch)
tree4ba7b7e17b1bf7fdc315acacfa49bd13979e49a1 /science/libghemical
parent9dfbb5ce5b0d3082dfc9fd706f22a6181184294c (diff)
downloadports-8d7dab397845220868fed24fd403dc59661ddf10.tar.gz
ports-8d7dab397845220868fed24fd403dc59661ddf10.zip
Notes
Diffstat (limited to 'science/libghemical')
-rw-r--r--science/libghemical/Makefile10
-rw-r--r--science/libghemical/distinfo4
-rw-r--r--science/libghemical/files/patch-configure167
-rw-r--r--science/libghemical/pkg-plist2
4 files changed, 8 insertions, 175 deletions
diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile
index 127b2fe16847..d874367e620f 100644
--- a/science/libghemical/Makefile
+++ b/science/libghemical/Makefile
@@ -2,17 +2,15 @@
# $FreeBSD$
PORTNAME= libghemical
-PORTVERSION= 2.99.1
-PORTREVISION= 3
+PORTVERSION= 3.0.0
CATEGORIES= science
-MASTER_SITES= http://www.uku.fi/~thassine/projects/download/release20090911/ \
- http://bioinformatics.org/ghemical/download/
-
+MASTER_SITES= http://bioinformatics.org/ghemical/download/release20111012/ \
+ http://bioinformatics.org/ghemical/download/current
+
MAINTAINER= maho@FreeBSD.org
COMMENT= Support libraries of science/ghemical port
BUILD_DEPENDS= obabel:${PORTSDIR}/science/openbabel \
- mopac7:${PORTSDIR}/biology/mopac \
intltool-update:${PORTSDIR}/textproc/intltool \
ld:${PORTSDIR}/devel/binutils
LIB_DEPENDS+= mpqc:${PORTSDIR}/science/mpqc \
diff --git a/science/libghemical/distinfo b/science/libghemical/distinfo
index 4c786f3fe61a..0be1e69b88f6 100644
--- a/science/libghemical/distinfo
+++ b/science/libghemical/distinfo
@@ -1,2 +1,2 @@
-SHA256 (libghemical-2.99.1.tar.gz) = f9b6df3c1e98a524f90644ebaaebb804792f391ca383c0f92b609060dc485d9f
-SIZE (libghemical-2.99.1.tar.gz) = 778812
+SHA256 (libghemical-3.0.0.tar.gz) = db8c3add0aa1f94c21016d60fa3f66fb194e56b8e9fceaa3860c603700efc3ac
+SIZE (libghemical-3.0.0.tar.gz) = 787947
diff --git a/science/libghemical/files/patch-configure b/science/libghemical/files/patch-configure
deleted file mode 100644
index 632462e3bc5f..000000000000
--- a/science/libghemical/files/patch-configure
+++ /dev/null
@@ -1,167 +0,0 @@
---- configure 2009-09-11 21:25:42.000000000 +0900
-+++ configure 2010-09-19 11:02:25.000000000 +0900
-@@ -22644,144 +22644,8 @@
-
-
- if test $enable_mpqc = yes; then
--
--{ echo "$as_me:$LINENO: checking for main in -lblas" >&5
--echo $ECHO_N "checking for main in -lblas... $ECHO_C" >&6; }
--if test "${ac_cv_lib_blas_main+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- ac_check_lib_save_LIBS=$LIBS
--LIBS="-lblas $LIBS"
--cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--
--
--int
--main ()
--{
--return main ();
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (ac_try="$ac_link"
--case "(($ac_try" in
-- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-- *) ac_try_echo=$ac_try;;
--esac
--eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-- (eval "$ac_link") 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } && {
-- test -z "$ac_c_werror_flag" ||
-- test ! -s conftest.err
-- } && test -s conftest$ac_exeext &&
-- $as_test_x conftest$ac_exeext; then
-- ac_cv_lib_blas_main=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
-- ac_cv_lib_blas_main=no
--fi
--
--rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
-- conftest$ac_exeext conftest.$ac_ext
--LIBS=$ac_check_lib_save_LIBS
--fi
--{ echo "$as_me:$LINENO: result: $ac_cv_lib_blas_main" >&5
--echo "${ECHO_T}$ac_cv_lib_blas_main" >&6; }
--if test $ac_cv_lib_blas_main = yes; then
-- cat >>confdefs.h <<_ACEOF
--#define HAVE_LIBBLAS 1
--_ACEOF
--
-- LIBS="-lblas $LIBS"
--
--else
-- { { echo "$as_me:$LINENO: error: Cannot find blas library needed for MPQC support" >&5
--echo "$as_me: error: Cannot find blas library needed for MPQC support" >&2;}
-- { (exit 1); exit 1; }; }
--fi
--
--
--{ echo "$as_me:$LINENO: checking for main in -llapack" >&5
--echo $ECHO_N "checking for main in -llapack... $ECHO_C" >&6; }
--if test "${ac_cv_lib_lapack_main+set}" = set; then
-- echo $ECHO_N "(cached) $ECHO_C" >&6
--else
-- ac_check_lib_save_LIBS=$LIBS
--LIBS="-llapack $LIBS"
--cat >conftest.$ac_ext <<_ACEOF
--/* confdefs.h. */
--_ACEOF
--cat confdefs.h >>conftest.$ac_ext
--cat >>conftest.$ac_ext <<_ACEOF
--/* end confdefs.h. */
--
--
--int
--main ()
--{
--return main ();
-- ;
-- return 0;
--}
--_ACEOF
--rm -f conftest.$ac_objext conftest$ac_exeext
--if { (ac_try="$ac_link"
--case "(($ac_try" in
-- *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
-- *) ac_try_echo=$ac_try;;
--esac
--eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
-- (eval "$ac_link") 2>conftest.er1
-- ac_status=$?
-- grep -v '^ *+' conftest.er1 >conftest.err
-- rm -f conftest.er1
-- cat conftest.err >&5
-- echo "$as_me:$LINENO: \$? = $ac_status" >&5
-- (exit $ac_status); } && {
-- test -z "$ac_c_werror_flag" ||
-- test ! -s conftest.err
-- } && test -s conftest$ac_exeext &&
-- $as_test_x conftest$ac_exeext; then
-- ac_cv_lib_lapack_main=yes
--else
-- echo "$as_me: failed program was:" >&5
--sed 's/^/| /' conftest.$ac_ext >&5
--
-- ac_cv_lib_lapack_main=no
--fi
--
--rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
-- conftest$ac_exeext conftest.$ac_ext
--LIBS=$ac_check_lib_save_LIBS
--fi
--{ echo "$as_me:$LINENO: result: $ac_cv_lib_lapack_main" >&5
--echo "${ECHO_T}$ac_cv_lib_lapack_main" >&6; }
--if test $ac_cv_lib_lapack_main = yes; then
-- cat >>confdefs.h <<_ACEOF
--#define HAVE_LIBLAPACK 1
--_ACEOF
--
-- LIBS="-llapack $LIBS"
--
--else
-- { { echo "$as_me:$LINENO: error: Cannot find lapack library needed for MPQC support" >&5
--echo "$as_me: error: Cannot find lapack library needed for MPQC support" >&2;}
-- { (exit 1); exit 1; }; }
--fi
--
-+ #AC_CHECK_LIB([blas], [main],, AC_MSG_ERROR([Cannot find blas library needed for MPQC support]))
-+ #AC_CHECK_LIB([lapack], [main],, AC_MSG_ERROR([Cannot find lapack library needed for MPQC support]))
-
- # Check whether --with-sc-prefix was given.
- if test "${with_sc_prefix+set}" = set; then
-@@ -23125,7 +22989,7 @@
- #define SC_MICRO_VERSION $SC_MICRO_VERSION
- _ACEOF
-
-- CPPFLAGS="$CPPFLAGS $SC_CPPFLAGS"
-+ CXXFLAGS="$CXXFLAGS $SC_CPPFLAGS"
- LIBS="$LIBS $SC_LIBS"
- else { { echo "$as_me:$LINENO: error: Cannot find proper SC version" >&5
- echo "$as_me: error: Cannot find proper SC version" >&2;}
-@@ -23254,7 +23118,7 @@
- ##alt MOPAC7_CFLAGS=`$PKG_CONFIG --cflags libmopac7`
- ##alt MOPAC7_LIBS=`$PKG_CONFIG --libs libmopac7`
-
-- CPPFLAGS="$CPPFLAGS $MOPAC7_CFLAGS"
-+ CXXFLAGS="$CXXLAGS $MOPAC7_CFLAGS"
- LIBS="$LIBS $MOPAC7_LIBS"
-
- REQUISITIONS="$REQUISITIONS libmopac7"
diff --git a/science/libghemical/pkg-plist b/science/libghemical/pkg-plist
index 83b1ca688f2d..91c1ece8d110 100644
--- a/science/libghemical/pkg-plist
+++ b/science/libghemical/pkg-plist
@@ -68,9 +68,11 @@ share/libghemical/%%LIBGHEMICAL_VERSION%%/param_mm/tripos52/parameters5.txt
share/libghemical/%%LIBGHEMICAL_VERSION%%/param_sf/default/loopdip.txt
share/libghemical/%%LIBGHEMICAL_VERSION%%/param_sf/default/looptor.txt
share/libghemical/%%LIBGHEMICAL_VERSION%%/param_sf/default/nonbonded.txt
+share/locale/de/LC_MESSAGES/libghemical.mo
share/locale/fi/LC_MESSAGES/libghemical.mo
share/locale/mk/LC_MESSAGES/libghemical.mo
share/locale/pt_BR/LC_MESSAGES/libghemical.mo
+share/locale/ru/LC_MESSAGES/libghemical.mo
share/locale/sq/LC_MESSAGES/libghemical.mo
@dirrm share/libghemical/%%LIBGHEMICAL_VERSION%%/param_sf/default
@dirrm share/libghemical/%%LIBGHEMICAL_VERSION%%/param_sf