9 files changed, 666 insertions, 0 deletions

diff --git a/science/liggghts/Makefile b/science/liggghts/Makefile
new file mode 100644
index 000000000000..90366840ff40
--- /dev/null
+++ b/science/liggghts/Makefile
@@ -0,0 +1,38 @@
+# $FreeBSD$
+
+PORTNAME=	liggghts
+DISTVERSION=	3.8.0
+CATEGORIES=	science
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Discrete element method particle simulation software
+
+LICENSE=	GPLv2
+LICENSE_FILE=	${WRKSRC}/../LICENSE
+
+BUILD_DEPENDS=	gsed:textproc/gsed
+LIB_DEPENDS=	libexpat.so:textproc/expat2 \
+		libfreetype.so:print/freetype2 \
+		libmpi.so:net/openmpi \
+		libpng16.so:graphics/png \
+		libtiff.so:graphics/tiff \
+		libvtkViewsCore-8.1.so:math/vtk8
+
+USES=		compiler:c++17-lang cmake:outsource fortran jpeg qt:5
+USE_GITHUB=	yes
+GH_ACCOUNT=	CFDEMproject
+GH_PROJECT=	${PORTNAME:tu}-PUBLIC
+USE_XORG=	ice sm x11 xext xt
+USE_QT=		core gui sql widgets qmake_build buildtools_build
+USE_LDCONFIG=	yes
+
+CMAKE_ARGS=	-DMPI_C_COMPILER:FILEPATH="${LOCALBASE}/mpi/openmpi/bin/mpicc" -DMPI_CXX_COMPILER:FILEPATH="${LOCALBASE}/mpi/openmpi/bin/mpicxx"
+
+WRKSRC_SUBDIR=	src
+
+CFLAGS+=	-fPIC
+CXXFLAGS+=	-fPIC
+
+BINARY_ALIAS=	sed=gsed
+
+.include <bsd.port.mk>
diff --git a/science/liggghts/distinfo b/science/liggghts/distinfo
new file mode 100644
index 000000000000..bc32d19b2eb5
--- /dev/null
+++ b/science/liggghts/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1541105259
+SHA256 (CFDEMproject-LIGGGHTS-PUBLIC-3.8.0_GH0.tar.gz) = 9cb2e6596f584463ac2f80e3ff7b9588b7e3638c44324635b6329df87b90ab03
+SIZE (CFDEMproject-LIGGGHTS-PUBLIC-3.8.0_GH0.tar.gz) = 35989481
diff --git a/science/liggghts/files/patch-CMakeLists.txt b/science/liggghts/files/patch-CMakeLists.txt
new file mode 100644
index 000000000000..186f0114a54d
--- /dev/null
+++ b/science/liggghts/files/patch-CMakeLists.txt
@@ -0,0 +1,72 @@
+--- CMakeLists.txt.orig	2018-11-04 08:11:29 UTC
++++ CMakeLists.txt
+@@ -47,9 +47,9 @@ ENDIF()
+ ADD_LIBRARY(liggghts_obj OBJECT ${SOURCES})
+ ADD_DEPENDENCIES(liggghts_obj GenerateHeaders)
+ 
+-ADD_LIBRARY(liggghts_static STATIC $<TARGET_OBJECTS:liggghts_obj>)
+-SET_TARGET_PROPERTIES(liggghts_static PROPERTIES OUTPUT_NAME liggghts)
+-SET_PROPERTY(TARGET liggghts_static PROPERTY PUBLIC_HEADER ${HEADERS})
++#ADD_LIBRARY(liggghts_static STATIC $<TARGET_OBJECTS:liggghts_obj>)
++#SET_TARGET_PROPERTIES(liggghts_static PROPERTIES OUTPUT_NAME liggghts)
++#SET_PROPERTY(TARGET liggghts_static PROPERTY PUBLIC_HEADER ${HEADERS})
+ 
+ ADD_LIBRARY(liggghts_shared SHARED $<TARGET_OBJECTS:liggghts_obj>)
+ SET_TARGET_PROPERTIES(liggghts_shared PROPERTIES OUTPUT_NAME liggghts)
+@@ -67,7 +67,7 @@ FIND_PACKAGE(VTK NO_MODULE)
+ IF(VTK_FOUND)
+   INCLUDE(${VTK_USE_FILE})
+   ADD_DEFINITIONS(-DLAMMPS_VTK)
+-  TARGET_LINK_LIBRARIES(liggghts_static ${VTK_LIBRARIES})
++  #TARGET_LINK_LIBRARIES(liggghts_static ${VTK_LIBRARIES})
+   TARGET_LINK_LIBRARIES(liggghts_shared ${VTK_LIBRARIES})
+   TARGET_LINK_LIBRARIES(liggghts_bin ${VTK_LIBRARIES})
+   MESSAGE(STATUS "Found VTK")
+@@ -82,7 +82,7 @@ FIND_PACKAGE(JPEG)
+ IF(JPEG_FOUND)
+   INCLUDE_DIRECTORIES(${JPEG_INCLUDE_DIR})
+   ADD_DEFINITIONS(-DLAMMPS_JPEG)
+-  TARGET_LINK_LIBRARIES(liggghts_static jpeg)
++  #TARGET_LINK_LIBRARIES(liggghts_static jpeg)
+   TARGET_LINK_LIBRARIES(liggghts_shared jpeg)
+   TARGET_LINK_LIBRARIES(liggghts_bin jpeg)
+ ELSE(JPEG_FOUND)
+@@ -95,25 +95,25 @@ FIND_PACKAGE(MPI)
+ 
+ IF(MPI_FOUND)
+   INCLUDE_DIRECTORIES(${MPI_INCLUDE_PATH})
+-  TARGET_LINK_LIBRARIES(liggghts_static ${MPI_LIBRARIES})
++  #TARGET_LINK_LIBRARIES(liggghts_static ${MPI_LIBRARIES})
+   TARGET_LINK_LIBRARIES(liggghts_shared ${MPI_LIBRARIES})
+   TARGET_LINK_LIBRARIES(liggghts_bin ${MPI_LIBRARIES})
+ 
+   IF(MPI_COMPILE_FLAGS)
+-    SET_TARGET_PROPERTIES(liggghts_static PROPERTIES COMPILE_FLAGS "${MPI_COMPILE_FLAGS}")
++    #SET_TARGET_PROPERTIES(liggghts_static PROPERTIES COMPILE_FLAGS "${MPI_COMPILE_FLAGS}")
+     SET_TARGET_PROPERTIES(liggghts_shared PROPERTIES COMPILE_FLAGS "${MPI_COMPILE_FLAGS}")
+     SET_TARGET_PROPERTIES(liggghts_bin PROPERTIES COMPILE_FLAGS "${MPI_COMPILE_FLAGS}")
+   ENDIF()
+ 
+   IF(MPI_LINK_FLAGS)
+-    SET_TARGET_PROPERTIES(liggghts_static PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
++    #SET_TARGET_PROPERTIES(liggghts_static PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
+     SET_TARGET_PROPERTIES(liggghts_shared PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
+     SET_TARGET_PROPERTIES(liggghts_bin PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
+   ENDIF()
+ ELSE(MPI_FOUND)
+   MESSAGE(STATUS "MPI NOT found! Using MPI Stubs instead.")
+   ADD_SUBDIRECTORY(STUBS)
+-  TARGET_LINK_LIBRARIES(liggghts_static mpi_stubs)
++  #TARGET_LINK_LIBRARIES(liggghts_static mpi_stubs)
+   TARGET_LINK_LIBRARIES(liggghts_shared mpi_stubs)
+   TARGET_LINK_LIBRARIES(liggghts_bin mpi_stubs)
+ ENDIF(MPI_FOUND)
+@@ -128,7 +128,7 @@ ENDIF(MPI_FOUND)
+ #        RUNTIME DESTINATION bin
+ #        LIBRARY DESTINATION lib)
+ 
+-install(TARGETS liggghts_bin liggghts_static liggghts_shared
++install(TARGETS liggghts_bin liggghts_shared
+         RUNTIME DESTINATION bin
+         LIBRARY DESTINATION lib
+         ARCHIVE DESTINATION lib
diff --git a/science/liggghts/files/patch-finish.cpp b/science/liggghts/files/patch-finish.cpp
new file mode 100644
index 000000000000..fd27979c4b65
--- /dev/null
+++ b/science/liggghts/files/patch-finish.cpp
@@ -0,0 +1,11 @@
+--- finish.cpp.orig	2018-11-02 06:42:25 UTC
++++ finish.cpp
+@@ -719,7 +719,7 @@ void Finish::end(int flag)
+ 
+     nneighfull = 0;
+     if (m < neighbor->old_nrequest) {
+-      if (neighbor->lists[m]->numneigh > 0) {
++      if (neighbor->lists[m]->numneigh) { // see https://www.cfdem.com/forums/error-non-const-lvalue-reference-type-basicostringstream-cannot-bind-temporary-type
+         int inum = neighbor->lists[m]->inum;
+         int *ilist = neighbor->lists[m]->ilist;
+         int *numneigh = neighbor->lists[m]->numneigh;
diff --git a/science/liggghts/files/patch-math__vector.h b/science/liggghts/files/patch-math__vector.h
new file mode 100644
index 000000000000..4c96ce457e1a
--- /dev/null
+++ b/science/liggghts/files/patch-math__vector.h
@@ -0,0 +1,38 @@
+--- math_vector.h.orig	2018-11-02 06:51:37 UTC
++++ math_vector.h
+@@ -94,7 +94,7 @@ inline void vec_neg(vector &dest) {     
+   dest[2] = -dest[2]; }
+ 
+ inline void vec_norm(vector &dest) {                                 // a/|a|
+-  register double f = sqrt(vec_dot(dest, dest));
++  double f = sqrt(vec_dot(dest, dest));
+   dest[0] /= f;
+   dest[1] /= f;
+   dest[2] /= f; }
+@@ -222,7 +222,7 @@ inline void form_subtr(shape &dest, form
+   dest[3] -= src[3]; dest[4] -= src[4]; dest[5] -= src[5]; }
+ 
+ inline int form_inv(form &m_inv, form &m) {                        // m^-1
+-  register double det = form_det(m);
++  double det = form_det(m);
+   if (fzero(det)) return 0;
+   m_inv[0] = (m[1]*m[2]-m[3]*m[3])/det;
+   m_inv[1] = (m[0]*m[2]-m[4]*m[4])/det;
+@@ -377,7 +377,7 @@ inline void form4_unit(form4 &dest) {
+   dest[0] = dest[1] = dest[2] = dest[3] = 1.0; }
+ 
+ inline double form4_det(form4 &m) {
+-  register double f = m[6]*m[7]-m[5]*m[8];
++  double f = m[6]*m[7]-m[5]*m[8];
+   return m[0]*(
+       m[1]*(m[2]*m[3]-m[4]*m[4])+
+       m[5]*(2.0*m[4]*m[7]-m[2]*m[5])-m[3]*m[7]*m[7])+f*f+
+@@ -387,7 +387,7 @@ inline double form4_det(form4 &m) {
+         m[9]*(m[4]*m[4]-m[2]*m[3])); }
+ 
+ inline int form4_inv(form4 &m_inv, form4 &m) {
+-  register double det = form4_det(m);
++  double det = form4_det(m);
+   if (fzero(det)) return 0;
+   m_inv[0] = (m[1]*(m[2]*m[3]-m[4]*m[4])+
+       m[5]*(2.0*m[4]*m[7]-m[2]*m[5])-m[3]*m[7]*m[7])/det;
diff --git a/science/liggghts/files/patch-pair.cpp b/science/liggghts/files/patch-pair.cpp
new file mode 100644
index 000000000000..4e1a7db54aef
--- /dev/null
+++ b/science/liggghts/files/patch-pair.cpp
@@ -0,0 +1,20 @@
+--- pair.cpp.orig	2018-11-02 06:56:59 UTC
++++ pair.cpp
+@@ -566,7 +566,7 @@ void Pair::init_tables_disp(double cut_l
+     }
+     
+     rsq = rsq_lookup.f;
+-    register double x2 = g2*rsq, a2 = 1.0/x2;
++    double x2 = g2*rsq, a2 = 1.0/x2;
+     x2 = a2*exp(-x2);
+ 
+     rdisptable[i] = rsq_lookup.f;
+@@ -612,7 +612,7 @@ void Pair::init_tables_disp(double cut_l
+   if (rsq_lookup.f < (cut_lj_globalsq = cut_lj_global * cut_lj_global)) {
+     rsq_lookup.f = cut_lj_globalsq;
+     
+-    register double x2 = g2*rsq, a2 = 1.0/x2;
++    double x2 = g2*rsq, a2 = 1.0/x2;
+     x2 = a2*exp(-x2);
+     f_tmp = g8*(((6.0*a2+6.0)*a2+3.0)*a2+1.0)*x2*rsq;
+     e_tmp = g6*((a2+1.0)*a2+0.5)*x2;
diff --git a/science/liggghts/files/patch-utils.h b/science/liggghts/files/patch-utils.h
new file mode 100644
index 000000000000..31adc450fe7e
--- /dev/null
+++ b/science/liggghts/files/patch-utils.h
@@ -0,0 +1,15 @@
+--- utils.h.orig	2018-11-02 06:39:45 UTC
++++ utils.h
+@@ -67,7 +67,11 @@ namespace Utils {
+ 
+   inline std::string int_to_string(int a)
+   {
+-    return static_cast< std::ostringstream & >(( std::ostringstream() << std::dec << a ) ).str();
++    // see https://www.cfdem.com/forums/error-non-const-lvalue-reference-type-basicostringstream-cannot-bind-temporary-type
++    // return static_cast< std::ostringstream & >(( std::ostringstream() << std::dec << a ) ).str();
++    std::ostringstream ss;
++    ss << std::dec << a;
++    return ss.str();
+   }
+ 
+   inline std::string double_to_string(double dbl)
diff --git a/science/liggghts/pkg-descr b/science/liggghts/pkg-descr
new file mode 100644
index 000000000000..d1f50855ddd8
--- /dev/null
+++ b/science/liggghts/pkg-descr
@@ -0,0 +1,21 @@
+LIGGGHTS stands for LAMMPS improved for general granular and granular heat
+transfer simulations.
+
+LAMMPS is a classical molecular dynamics simulator. It is widely used in the
+field of Molecular Dynamics. Thanks to physical and algorithmic analogies,
+LAMMPS is a very good platform for DEM simulations. LAMMPS offers a GRANULAR
+package to perform these kind of simulations. LIGGGHTS aims to improve those
+capability with the goal to apply it to industrial applications.
+
+The features added in LIGGGHTS with respect to the original LAMMPS distribution
+comprise:
+* Import and handling of complex wall geometries from CAD
+* A moving mesh feature to account for moving geometry
+* Re-write of contact force formulation, including optional cohesional and
+  rolling friction forces
+* Heat conduction between particles in contact
+* Improved particle insertion based on surface and volume meshes
+* A "template" mechanism to account for particle non-uniformity
+* More features added in the meantime and upcoming, see here.
+
+WWW: https://www.cfdem.com/liggghts-open-source-discrete-element-method-particle-simulation-code
diff --git a/science/liggghts/pkg-plist b/science/liggghts/pkg-plist
new file mode 100644
index 000000000000..9a71fea977dd
--- /dev/null
+++ b/science/liggghts/pkg-plist
@@ -0,0 +1,448 @@
+bin/liggghts
+include/abstract_mesh.h
+include/accelerator_cuda.h
+include/accelerator_omp.h
+include/angle.h
+include/angle_hybrid.h
+include/associative_pointer_array.h
+include/associative_pointer_array_I.h
+include/atom.h
+include/atom_masks.h
+include/atom_vec.h
+include/atom_vec_atomic.h
+include/atom_vec_charge.h
+include/atom_vec_convexhull.h
+include/atom_vec_ellipsoid.h
+include/atom_vec_full.h
+include/atom_vec_hybrid.h
+include/atom_vec_line.h
+include/atom_vec_molecular.h
+include/atom_vec_sph.h
+include/atom_vec_sph_var.h
+include/atom_vec_sphere.h
+include/atom_vec_superquadric.h
+include/atom_vec_tri.h
+include/bond.h
+include/bond_harmonic.h
+include/bond_hybrid.h
+include/bounding_box.h
+include/cfd_datacoupling.h
+include/cfd_datacoupling_file.h
+include/cfd_datacoupling_mpi.h
+include/cfd_datacoupling_simple.h
+include/cfd_regionmodel.h
+include/cfd_regionmodel_none.h
+include/change_box.h
+include/citeme.h
+include/cohesion_model_base.h
+include/cohesion_model_easo_capillary_viscous.h
+include/cohesion_model_sjkr.h
+include/cohesion_model_sjkr2.h
+include/cohesion_model_washino_capillary_viscous.h
+include/comm.h
+include/comm_I.h
+include/compute.h
+include/compute_atom_molecule.h
+include/compute_bond_local.h
+include/compute_centro_atom.h
+include/compute_cluster_atom.h
+include/compute_cna_atom.h
+include/compute_com.h
+include/compute_com_molecule.h
+include/compute_contact_atom.h
+include/compute_contact_atom_gran.h
+include/compute_coord_atom.h
+include/compute_displace_atom.h
+include/compute_erotate.h
+include/compute_erotate_asphere.h
+include/compute_erotate_multisphere.h
+include/compute_erotate_sphere.h
+include/compute_erotate_sphere_atom.h
+include/compute_erotate_superquadric.h
+include/compute_group_group.h
+include/compute_gyration.h
+include/compute_gyration_molecule.h
+include/compute_inertia_molecule.h
+include/compute_ke.h
+include/compute_ke_atom.h
+include/compute_ke_multisphere.h
+include/compute_msd.h
+include/compute_msd_molecule.h
+include/compute_nparticles_tracer_region.h
+include/compute_pair_gran_local.h
+include/compute_pe.h
+include/compute_pe_atom.h
+include/compute_pressure.h
+include/compute_property_atom.h
+include/compute_property_local.h
+include/compute_property_molecule.h
+include/compute_rdf.h
+include/compute_reduce.h
+include/compute_reduce_region.h
+include/compute_rigid.h
+include/compute_slice.h
+include/compute_stress_atom.h
+include/compute_temp.h
+include/contact_interface.h
+include/contact_model_base.h
+include/contact_model_constants.h
+include/contact_models.h
+include/container.h
+include/container_base.h
+include/container_base_I.h
+include/create_atoms.h
+include/create_box.h
+include/custom_value_tracker.h
+include/custom_value_tracker_I.h
+include/debug_liggghts.h
+include/delete_atoms.h
+include/delete_bonds.h
+include/dihedral.h
+include/dihedral_hybrid.h
+include/displace_atoms.h
+include/domain.h
+include/domain_I.h
+include/domain_definitions.h
+include/domain_wedge.h
+include/domain_wedge_dummy.h
+include/dump.h
+include/dump_atom_vtk.h
+include/dump_custom.h
+include/dump_custom_vtk.h
+include/dump_custom_vtm.h
+include/dump_decomposition_vtk.h
+include/dump_euler_vtk.h
+include/dump_image.h
+include/dump_local.h
+include/dump_local_gran.h
+include/dump_local_gran_vtk.h
+include/dump_mesh.h
+include/dump_mesh_stl.h
+include/dump_mesh_vtk.h
+include/dump_mesh_vtm.h
+include/dump_movie.h
+include/dump_particle.h
+include/dump_vtk.h
+include/dump_xyz.h
+include/error.h
+include/error_special.h
+include/finish.h
+include/fix.h
+include/fix_adapt.h
+include/fix_addforce.h
+include/fix_ave_atom.h
+include/fix_ave_correlate.h
+include/fix_ave_euler.h
+include/fix_ave_histo.h
+include/fix_ave_spatial.h
+include/fix_ave_time.h
+include/fix_aveforce.h
+include/fix_base_liggghts.h
+include/fix_box_relax.h
+include/fix_buoyancy.h
+include/fix_calculate_energy_wall.h
+include/fix_cfd_coupling.h
+include/fix_cfd_coupling_convection.h
+include/fix_cfd_coupling_convection_impl.h
+include/fix_cfd_coupling_convection_species.h
+include/fix_cfd_coupling_force.h
+include/fix_cfd_coupling_force_implicit.h
+include/fix_check_timestep_gran.h
+include/fix_check_timestep_sph.h
+include/fix_contact_atom_counter.h
+include/fix_contact_atom_counter_dummy.h
+include/fix_contact_atom_counter_wall.h
+include/fix_contact_atom_counter_wall_dummy.h
+include/fix_contact_history.h
+include/fix_contact_history_mesh.h
+include/fix_contact_history_mesh_I.h
+include/fix_contact_property_atom.h
+include/fix_contact_property_atom_wall.h
+include/fix_continuum_weighted.h
+include/fix_deform.h
+include/fix_deform_check.h
+include/fix_diam_max.h
+include/fix_drag.h
+include/fix_dt_reset.h
+include/fix_dummy.h
+include/fix_dummy2.h
+include/fix_efield.h
+include/fix_enforce2d.h
+include/fix_external.h
+include/fix_fiber_spring_simple.h
+include/fix_freeze.h
+include/fix_gravity.h
+include/fix_heat_gran.h
+include/fix_heat_gran_conduction.h
+include/fix_insert.h
+include/fix_insert_pack.h
+include/fix_insert_rate_region.h
+include/fix_insert_stream.h
+include/fix_insert_stream_predefined.h
+include/fix_lb_coupling_onetoone.h
+include/fix_lineforce.h
+include/fix_massflow_mesh.h
+include/fix_massflow_mesh_sieve.h
+include/fix_mesh.h
+include/fix_mesh_surface.h
+include/fix_minimize.h
+include/fix_mixing.h
+include/fix_momentum.h
+include/fix_move.h
+include/fix_move_mesh.h
+include/fix_multicontact_halfspace.h
+include/fix_multisphere.h
+include/fix_multisphere_break.h
+include/fix_multisphere_comm_I.h
+include/fix_neighlist_mesh.h
+include/fix_nve.h
+include/fix_nve_asphere.h
+include/fix_nve_asphere_base.h
+include/fix_nve_asphere_noforce.h
+include/fix_nve_limit.h
+include/fix_nve_line.h
+include/fix_nve_noforce.h
+include/fix_nve_sph.h
+include/fix_nve_sph_stationary.h
+include/fix_nve_sphere.h
+include/fix_nve_superquadric.h
+include/fix_particledistribution_discrete.h
+include/fix_planeforce.h
+include/fix_print.h
+include/fix_property_atom.h
+include/fix_property_atom_region_tracer.h
+include/fix_property_atom_tracer.h
+include/fix_property_atom_tracer_stream.h
+include/fix_property_global.h
+include/fix_read_restart.h
+include/fix_region_variable.h
+include/fix_relax_contacts.h
+include/fix_remove.h
+include/fix_respa.h
+include/fix_rigid.h
+include/fix_scalar_transport_equation.h
+include/fix_setforce.h
+include/fix_sph.h
+include/fix_sph_density_continuity.h
+include/fix_sph_density_corr.h
+include/fix_sph_density_summation.h
+include/fix_sph_pressure.h
+include/fix_spring.h
+include/fix_spring_rg.h
+include/fix_spring_self.h
+include/fix_store.h
+include/fix_store_force.h
+include/fix_store_state.h
+include/fix_template_multiplespheres.h
+include/fix_template_multisphere.h
+include/fix_template_sphere.h
+include/fix_template_superquadric.h
+include/fix_viscous.h
+include/fix_wall.h
+include/fix_wall_gran.h
+include/fix_wall_gran_base.h
+include/fix_wall_region.h
+include/fix_wall_region_sph.h
+include/fix_wall_sph.h
+include/force.h
+include/general_container.h
+include/general_container_I.h
+include/global_properties.h
+include/granular_pair_style.h
+include/granular_styles.h
+include/granular_wall.h
+include/group.h
+include/histogram.h
+include/image.h
+include/improper.h
+include/improper_hybrid.h
+include/info.h
+include/input.h
+include/input_mesh_tet.h
+include/input_mesh_tri.h
+include/input_multisphere.h
+include/integrate.h
+include/irregular.h
+include/kspace.h
+include/lammps.h
+include/lattice.h
+include/library.h
+include/library_cfd_coupling.h
+include/lmptype.h
+include/lmpwindows.h
+include/math_complex.h
+include/math_const.h
+include/math_extra.h
+include/math_extra_liggghts.h
+include/math_extra_liggghts_nonspherical.h
+include/math_extra_liggghts_superquadric.h
+include/math_special.h
+include/math_vector.h
+include/memory.h
+include/memory_ns.h
+include/mesh_module.h
+include/mesh_module_liquidtransfer.h
+include/mesh_module_stress.h
+include/mesh_module_stress_servo.h
+include/mesh_mover.h
+include/mesh_mover_linear.h
+include/mesh_mover_rotation.h
+include/min.h
+include/min_cg.h
+include/min_linesearch.h
+include/minimize.h
+include/modified_andrew.h
+include/modify.h
+include/mpi_liggghts.h
+include/multi_node_mesh.h
+include/multi_node_mesh_I.h
+include/multi_node_mesh_parallel.h
+include/multi_node_mesh_parallel_I.h
+include/multi_node_mesh_parallel_buffer_I.h
+include/multi_vector_container.h
+include/multisphere.h
+include/multisphere_I.h
+include/multisphere_parallel.h
+include/multisphere_parallel_I.h
+include/my_page.h
+include/my_pool_chunk.h
+include/neigh_bond.h
+include/neigh_derive.h
+include/neigh_dummy.h
+include/neigh_full.h
+include/neigh_gran.h
+include/neigh_half_bin.h
+include/neigh_half_multi.h
+include/neigh_half_nsq.h
+include/neigh_list.h
+include/neigh_mlg_dummy.h
+include/neigh_modify.h
+include/neigh_multi_level_grid.h
+include/neigh_request.h
+include/neigh_respa.h
+include/neighbor.h
+include/normal_model_base.h
+include/normal_model_edinburgh.h
+include/normal_model_edinburgh_stiffness.h
+include/normal_model_hertz.h
+include/normal_model_hertz_stiffness.h
+include/normal_model_hooke.h
+include/normal_model_hooke_hysteresis.h
+include/normal_model_hooke_stiffness.h
+include/normal_model_luding.h
+include/normal_model_thornton_ning.h
+include/os_specific.h
+include/output.h
+include/pack.h
+include/pair.h
+include/pair_gran.h
+include/pair_gran_base.h
+include/pair_gran_proxy.h
+include/pair_hybrid.h
+include/pair_hybrid_overlay.h
+include/pair_line_lj.h
+include/pair_soft.h
+include/pair_sph.h
+include/pair_sph_artvisc_tenscorr.h
+include/particleToInsert.h
+include/particleToInsertSuperquadric.h
+include/particleToInsert_multisphere.h
+include/pointers.h
+include/primitive_wall.h
+include/primitive_wall_definitions.h
+include/probability_distribution.h
+include/procmap.h
+include/properties.h
+include/property_registry.h
+include/random.h
+include/random_mars.h
+include/random_park.h
+include/read_data.h
+include/read_dump.h
+include/read_restart.h
+include/reader.h
+include/reader_native.h
+include/reader_xyz.h
+include/region.h
+include/region_block.h
+include/region_cone.h
+include/region_cylinder.h
+include/region_intersect.h
+include/region_mesh_tet.h
+include/region_mesh_tet_I.h
+include/region_neighbor_list.h
+include/region_neighbor_list_I.h
+include/region_neighbor_list_base.h
+include/region_neighbor_list_definitions.h
+include/region_plane.h
+include/region_prism.h
+include/region_sphere.h
+include/region_union.h
+include/region_wedge.h
+include/replicate.h
+include/respa.h
+include/rolling_model_base.h
+include/rolling_model_cdt.h
+include/rolling_model_epsd.h
+include/rolling_model_epsd2.h
+include/rolling_model_epsd3.h
+include/rolling_model_luding.h
+include/rotate.h
+include/run.h
+include/run_time.h
+include/scalar_container.h
+include/set.h
+include/settings.h
+include/signal_handling.h
+include/sort_buffer.h
+include/special.h
+include/sph_kernel_cubicspline.h
+include/sph_kernel_cubicspline2D.h
+include/sph_kernel_spiky.h
+include/sph_kernel_spiky2D.h
+include/sph_kernel_wendland.h
+include/sph_kernel_wendland2D.h
+include/sph_kernels.h
+include/string_liggghts.h
+include/suffix.h
+include/superquadric.h
+include/surface_mesh.h
+include/surface_mesh_I.h
+include/surface_mesh_feature_remove.h
+include/surface_mesh_feature_remove_I.h
+include/surface_model_base.h
+include/surface_model_default.h
+include/surface_model_multicontact.h
+include/surface_model_superquadric.h
+include/tangential_model_base.h
+include/tangential_model_history.h
+include/tangential_model_luding_tn.h
+include/tangential_model_no_history.h
+include/tet_mesh.h
+include/tet_mesh_I.h
+include/thermo.h
+include/timer.h
+include/tracking_mesh.h
+include/tracking_mesh_I.h
+include/tri_line.h
+include/tri_mesh.h
+include/tri_mesh_I.h
+include/tri_mesh_I_superquadric.h
+include/tri_mesh_deform.h
+include/tri_mesh_planar.h
+include/tri_mesh_planar_I.h
+include/universe.h
+include/update.h
+include/utils.h
+include/variable.h
+include/vector_container.h
+include/vector_liggghts.h
+include/velocity.h
+include/verlet.h
+include/version.h
+include/volume_mesh.h
+include/volume_mesh_I.h
+include/write_data.h
+include/write_dump.h
+include/write_restart.h
+lib/libliggghts.so