4 files changed, 16 insertions, 327 deletions

diff --git a/science/py-DendroPy/Makefile b/science/py-DendroPy/Makefile
index 1e135426a9f1..03f6d5428cd1 100644
--- a/science/py-DendroPy/Makefile
+++ b/science/py-DendroPy/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	DendroPy
-PORTVERSION=	3.0.2
+PORTVERSION=	3.0.5
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-DendroPy/distinfo b/science/py-DendroPy/distinfo
index 18f87fab87eb..0ab1bc517195 100644
--- a/science/py-DendroPy/distinfo
+++ b/science/py-DendroPy/distinfo
@@ -1,3 +1,3 @@
-MD5 (DendroPy-3.0.2.tar.gz) = d1e44937e5171fe864864f6cb8e629c1
-SHA256 (DendroPy-3.0.2.tar.gz) = 99304b4611f38da96370ca6470847e20a0ff01f78320438a872fdcebdb41f621
-SIZE (DendroPy-3.0.2.tar.gz) = 2233110
+MD5 (DendroPy-3.0.5.tar.gz) = 01d088b5184bdced992499fc0a6fbd12
+SHA256 (DendroPy-3.0.5.tar.gz) = 4688c28e771e448633354da31211f9078fed48701c991baa04b69cc04c39eed1
+SIZE (DendroPy-3.0.5.tar.gz) = 2238712
diff --git a/science/py-DendroPy/files/patch-setup.py b/science/py-DendroPy/files/patch-setup.py
index 455b04d52f80..4107230f620b 100644
--- a/science/py-DendroPy/files/patch-setup.py
+++ b/science/py-DendroPy/files/patch-setup.py
@@ -1,15 +1,16 @@
---- setup.py.orig	2010-01-09 13:22:53.000000000 +0800
-+++ setup.py	2010-01-09 13:23:15.000000000 +0800
-@@ -28,9 +28,9 @@
- import os
+--- setup.py.orig	2010-01-15 12:55:37.000000000 +0800
++++ setup.py	2010-01-15 12:55:53.000000000 +0800
+@@ -31,13 +31,6 @@
+ # setuptools/distutils/etc. import and configuration
  
  try:
 -    import ez_setup
--    sys.stderr.write("using ez_setup ('%s')\n" % os.path.abspath(ez_setup.__file__))
+-    try:
+-        ez_setup_path = " ('" + os.path.abspath(ez_setup.__file__) + "')"
+-    except OSError:
+-        ez_setup_path = ""
+-    sys.stderr.write("using ez_setup%s\n" %  ez_setup_path)
 -    ez_setup.use_setuptools()
-+#    import ez_setup
-+#    sys.stderr.write("using ez_setup ('%s')\n" % os.path.abspath(ez_setup.__file__))
-+#    ez_setup.use_setuptools()
      import setuptools
-     sys.stderr.write("using setuptools ('%s')\n" % os.path.abspath(setuptools.__file__))
-     from setuptools import setup, find_packages
+     try:
+         setuptools_path = " ('" +  os.path.abspath(setuptools.__file__) + "')"
diff --git a/science/py-DendroPy/pkg-plist b/science/py-DendroPy/pkg-plist
index d36cf1d5b021..db97df2e3274 100644
--- a/science/py-DendroPy/pkg-plist
+++ b/science/py-DendroPy/pkg-plist
@@ -2,316 +2,4 @@ bin/cattrees.py
 bin/long_branch_symmdiff.py
 bin/strict_consensus_merge.py
 bin/sumtrees.py
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/PKG-INFO
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-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/dependency_links.txt
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/not-zip-safe
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/requires.txt
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/cattrees.py
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/long_branch_symmdiff.py
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/strict_consensus_merge.py
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/sumtrees.py
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/top_level.txt
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/__init__.py
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/__init__.pyc
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/__init__.pyo
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/coalescent.py
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/coalescent.pyc
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/coalescent.pyo
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/continuous.py
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/continuous.pyc
-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/dendropy/continuous.pyo
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