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authorVanilla I. Shu <vanilla@FreeBSD.org>2015-02-17 01:46:24 +0000
committerVanilla I. Shu <vanilla@FreeBSD.org>2015-02-17 01:46:24 +0000
commit7e1312996b970fdd496e3a0a3cd033522e87cc31 (patch)
tree32f668d9c0f3986e401cc6442cf45ba352a3a5e3 /science
parent83787a97202d1ffdca6223419fbce8a1d634be0b (diff)
downloadports-7e1312996b970fdd496e3a0a3cd033522e87cc31.tar.gz
ports-7e1312996b970fdd496e3a0a3cd033522e87cc31.zip
Notes
Diffstat (limited to 'science')
-rw-r--r--science/gromacs/Makefile9
-rw-r--r--science/gromacs/distinfo4
-rw-r--r--science/gromacs/files/patch-src__external__thread_mpi__src__atomic.c17
3 files changed, 6 insertions, 24 deletions
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index b4c0ed3933a7..0469156c37f4 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -2,8 +2,7 @@
# $FreeBSD$
PORTNAME= gromacs
-PORTVERSION= 5.0.2
-PORTREVISION= 1
+PORTVERSION= 5.0.4
CATEGORIES= science
MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/
@@ -71,14 +70,14 @@ PLIST_SUB+= SUFFIX_MPI=""
.endif
post-patch:
- ${FIND} ${WRKSRC} -name "CMakeLists.txt" | ${XARGS} \
+ @${FIND} ${WRKSRC} -name "CMakeLists.txt" | ${XARGS} \
${REINPLACE_CMD} -e \
's|share/man|man| ; \
/pkgconfig/s|LIB_INSTALL_DIR}|CMAKE_INSTALL_PREFIX}/libdata|'
- ${FIND} ${WRKSRC} -name "GMXRC.*" | ${XARGS} ${REINPLACE_CMD} -e \
+ @${FIND} ${WRKSRC} -name "GMXRC.*" | ${XARGS} ${REINPLACE_CMD} -e \
's|LDLIB/pkgconfig|LDLIB/../libdata/pkgconfig| ; \
s|LDLIB}/pkgconfig|LDLIB}/../libdata/pkgconfig|'
- ${REINPLACE_CMD} -e '/CMAKE_REQUIRED_LIBRARIES/d' \
+ @${REINPLACE_CMD} -e '/CMAKE_REQUIRED_LIBRARIES/d' \
${WRKSRC}/cmake/gmxTestdlopen.cmake
.include <bsd.port.mk>
diff --git a/science/gromacs/distinfo b/science/gromacs/distinfo
index fdc1778c609e..ec11eca69683 100644
--- a/science/gromacs/distinfo
+++ b/science/gromacs/distinfo
@@ -1,2 +1,2 @@
-SHA256 (gromacs-5.0.2.tar.gz) = 244a458f3e5297e53a03b1999beedd6d1fa222ad5c597864fff024a8c589f58b
-SIZE (gromacs-5.0.2.tar.gz) = 26340320
+SHA256 (gromacs-5.0.4.tar.gz) = 78068eeccc0b950018ddb45c41280e53c8bedae4639dca48e17c940f8896b23b
+SIZE (gromacs-5.0.4.tar.gz) = 26342095
diff --git a/science/gromacs/files/patch-src__external__thread_mpi__src__atomic.c b/science/gromacs/files/patch-src__external__thread_mpi__src__atomic.c
deleted file mode 100644
index a807ab68010b..000000000000
--- a/science/gromacs/files/patch-src__external__thread_mpi__src__atomic.c
+++ /dev/null
@@ -1,17 +0,0 @@
---- src/external/thread_mpi/src/atomic.c.orig
-+++ src/external/thread_mpi/src/atomic.c
-@@ -35,6 +35,14 @@
- files.
- */
-
-+#ifdef HAVE_TMPI_CONFIG_H
-+#include "tmpi_config.h"
-+#endif
-+
-+#ifdef HAVE_CONFIG_H
-+#include "config.h"
-+#endif
-+
- #include "impl.h"
-
- /* This file is only needed when no intrinsic atomic operations are present. */