diff options
| author | Ade Lovett <ade@FreeBSD.org> | 2006-02-23 10:40:44 +0000 |
|---|---|---|
| committer | Ade Lovett <ade@FreeBSD.org> | 2006-02-23 10:40:44 +0000 |
| commit | 8503536d3896846d823f7f76be54e0a99da8d8b6 (patch) | |
| tree | 1a89e4038216ead71b008f2a5091474964e1c341 /science | |
| parent | c20d04e3929dbe1763fc1dfaaa677c2353cd7883 (diff) | |
| download | ports-8503536d3896846d823f7f76be54e0a99da8d8b6.tar.gz ports-8503536d3896846d823f7f76be54e0a99da8d8b6.zip | |
Notes
Diffstat (limited to 'science')
33 files changed, 282 insertions, 54 deletions
diff --git a/science/buddy/Makefile b/science/buddy/Makefile index dcac73ed8362..403357d6870f 100644 --- a/science/buddy/Makefile +++ b/science/buddy/Makefile @@ -7,6 +7,7 @@ PORTNAME= buddy PORTVERSION= 2.4 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= ${MASTER_SITE_SOURCEFORGE} MASTER_SITE_SUBDIR= buddy @@ -14,7 +15,7 @@ MASTER_SITE_SUBDIR= buddy MAINTAINER= llwang@infor.org COMMENT= A Binary Decision Diagram library -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} USE_GMAKE= yes INSTALLS_SHLIB= yes diff --git a/science/buddy/pkg-plist b/science/buddy/pkg-plist index 9bdb26d85819..927639d3e722 100644 --- a/science/buddy/pkg-plist +++ b/science/buddy/pkg-plist @@ -2,6 +2,7 @@ include/bdd.h include/bvec.h include/fdd.h lib/libbdd.a +lib/libbdd.la lib/libbdd.so lib/libbdd.so.0 %%PORTDOCS%%%%PORTDOCS%%%%DOCSDIR%%/bddnotes.ps diff --git a/science/flounder/Makefile b/science/flounder/Makefile index a98af23e4198..90db95e17399 100644 --- a/science/flounder/Makefile +++ b/science/flounder/Makefile @@ -21,7 +21,7 @@ LIB_DEPENDS= fltk:${PORTSDIR}/x11-toolkits/fltk \ png:${PORTSDIR}/graphics/png \ glut.4:${PORTSDIR}/graphics/libglut -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include -I${X11BASE}/include" \ LDFLAGS="-L${LOCALBASE}/lib -L${X11BASE}/lib ${PTHREAD_LIBS} -lstdc++" USE_GMAKE= yes diff --git a/science/gchempaint/Makefile b/science/gchempaint/Makefile index 2670b94a7ff5..e75606594f3c 100644 --- a/science/gchempaint/Makefile +++ b/science/gchempaint/Makefile @@ -6,6 +6,7 @@ PORTNAME= gchempaint PORTVERSION= 0.6.4 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= ${MASTER_SITE_SAVANNAH} MASTER_SITE_SUBDIR= ${PORTNAME} @@ -23,7 +24,7 @@ INSTALLS_SHLIB= yes GCONF_SCHEMAS= gchempaint-arrows.schemas USE_GNOME= gnomehack gnomeprefix intlhack libgnomeprintui libgnomeui USE_GMAKE= yes -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes USE_REINPLACE= yes CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" LIBS="-L${LOCALBASE}/lib" CONFIGURE_ARGS= --with-help-dir=${PREFIX}/share/gnome/help diff --git a/science/gchempaint/pkg-plist b/science/gchempaint/pkg-plist index ef3a556a6f96..8305aca7c441 100644 --- a/science/gchempaint/pkg-plist +++ b/science/gchempaint/pkg-plist @@ -32,14 +32,21 @@ include/gchempaint/text-object.h include/gchempaint/tool.h include/gchempaint/view.h include/gchempaint/widgetdata.h +lib/gchempaint/plugins/arrows.la lib/gchempaint/plugins/arrows.so +lib/gchempaint/plugins/atoms.la lib/gchempaint/plugins/atoms.so +lib/gchempaint/plugins/bonds.la lib/gchempaint/plugins/bonds.so +lib/gchempaint/plugins/cycles.la lib/gchempaint/plugins/cycles.so +lib/gchempaint/plugins/selection.la lib/gchempaint/plugins/selection.so +lib/gchempaint/plugins/templates.la lib/gchempaint/plugins/templates.so +lib/gchempaint/plugins/text.la lib/gchempaint/plugins/text.so -lib/libgchempaint.a +lib/libgchempaint.la lib/libgchempaint.so lib/libgchempaint.so.6 libdata/bonobo/servers/gchempaint.server diff --git a/science/gchemutils/Makefile b/science/gchemutils/Makefile index bdc3c05126c6..89f4bd36dc05 100644 --- a/science/gchemutils/Makefile +++ b/science/gchemutils/Makefile @@ -6,6 +6,7 @@ PORTNAME= gchemutils PORTVERSION= 0.4.8 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= ${MASTER_SITE_SAVANNAH} MASTER_SITE_SUBDIR= ${PORTNAME} @@ -21,7 +22,7 @@ USE_BZIP2= yes USE_X_PREFIX= yes USE_GNOME= gnomehack gnomeprefix intlhack libglade2 libgnomeprint libgnomeui USE_GMAKE= yes -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes USE_REINPLACE= yes INSTALLS_SHLIB= yes CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" LIBS="-L${LOCALBASE}/lib" diff --git a/science/gchemutils/pkg-plist b/science/gchemutils/pkg-plist index ae731ce9c290..9adc9cd33a2e 100644 --- a/science/gchemutils/pkg-plist +++ b/science/gchemutils/pkg-plist @@ -17,7 +17,7 @@ include/gcu/gcu/crystalatom.h include/gcu/gcu/crystalline.h include/gcu/gcu/crystalcleavage.h include/gcu/gcu/gtkchem3dviewer.h -lib/libgcu.a +lib/libgcu.la lib/libgcu.so lib/libgcu.so.4 libdata/bonobo/servers/gchem3d.server diff --git a/science/gerris/Makefile b/science/gerris/Makefile index 84b0346d122c..ccebb8f7d753 100644 --- a/science/gerris/Makefile +++ b/science/gerris/Makefile @@ -8,7 +8,7 @@ PORTNAME= gerris PORTVERSION= 0.6.0 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science math MASTER_SITES= ${MASTER_SITE_SOURCEFORGE} MASTER_SITE_SUBDIR= gfs @@ -33,7 +33,7 @@ CONFIGURE_ARGS+= --disable-dx .endif USE_GMAKE= yes -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} INSTALLS_SHLIB= yes USE_GNOME= pkgconfig diff --git a/science/gerris/pkg-plist b/science/gerris/pkg-plist index 40f2c31fb3fc..f26bb9cbe438 100644 --- a/science/gerris/pkg-plist +++ b/science/gerris/pkg-plist @@ -43,31 +43,39 @@ lib/gerris/dx3D.mdf lib/gerris/libdx2D-0.6.so lib/gerris/libdx2D-0.6.so.1 lib/gerris/libdx2D.a +lib/gerris/libdx2D.la lib/gerris/libdx2D.so lib/gerris/libdx3D-0.6.so lib/gerris/libdx3D-0.6.so.1 lib/gerris/libdx3D.a +lib/gerris/libdx3D.la lib/gerris/libdx3D.so lib/gerris/libperiodic_flow2D.a +lib/gerris/libperiodic_flow2D.la lib/gerris/libperiodic_flow2D.so lib/gerris/libperiodic_flow2D.so.0 lib/gerris/libtesting2D.a +lib/gerris/libtesting2D.la lib/gerris/libtesting2D.so lib/gerris/libtesting2D.so.0 lib/gerris/libvorticity_spectrum2D.a +lib/gerris/libvorticity_spectrum2D.la lib/gerris/libvorticity_spectrum2D.so lib/gerris/libvorticity_spectrum2D.so.0 lib/libgfs2D-0.6.so lib/libgfs2D-0.6.so.1 lib/libgfs2D.a +lib/libgfs2D.la lib/libgfs2D.so lib/libgfs2D3-0.6.so lib/libgfs2D3-0.6.so.1 lib/libgfs2D3.a +lib/libgfs2D3.la lib/libgfs2D3.so lib/libgfs3D-0.6.so lib/libgfs3D-0.6.so.1 lib/libgfs3D.a +lib/libgfs3D.la lib/libgfs3D.so libdata/pkgconfig/gerris2D.pc libdata/pkgconfig/gerris3D.pc diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile index 8cbb0decf2a1..fb9239a89a5b 100644 --- a/science/ghemical/Makefile +++ b/science/ghemical/Makefile @@ -36,7 +36,7 @@ pre-configure: pre-patch: @${REINPLACE_CMD} -e 's|gtk-config|${GTK_CONFIG}|g;' ${WRKSRC}/configure - @${REINPLACE_CMD} -e 's|gtk-config|${GTK_CONFIG}|g; s|-lgtk|-lgtk12|g;' \ + @${REINPLACE_CMD} -e 's|gtk-config|${GTK_CONFIG}|g; s|-lgtk|-lgtk-12|g;' \ ${WRKSRC}/Makefile.in pre-build: @${REINPLACE_CMD} -e 's|MAXHEV=60, MAXLIT=60|MAXHEV=90, MAXLIT=90|g;' \ diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile index a0f74283cc3f..080315bf5815 100644 --- a/science/gnudatalanguage/Makefile +++ b/science/gnudatalanguage/Makefile @@ -36,7 +36,7 @@ LIB_DEPENDS+= plplotd.10:${PORTSDIR}/math/plplot \ readline.5:${PORTSDIR}/devel/readline USE_XLIB= yes -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} CONFIGURE_ENV= CPPFLAGS="${CFLAGS} ${PTHREAD_CFLAGS} -I${LOCALBASE}/include -I${X11BASE}/include" \ LDFLAGS="${LDFLAGS} ${PTHREAD_LIBS} -L${LOCALBASE}/lib -L${X11BASE}/lib" @@ -83,8 +83,8 @@ CONFIGURE_ARGS+=--with-hdf=no .if !defined(WITHOUT_PYTHON) || defined(BUILD_PYTHON_MODULE) USE_PYTHON= 2.3+ -BUILD_DEPENDS+= ${PYTHON_SITELIBDIR}/numarray:${PORTSDIR}/math/py-numarray \ -RUN_DEPENDS+= ${PYTHON_SITELIBDIR}/numarray:${PORTSDIR}/math/py-numarray \ +BUILD_DEPENDS+= ${PYTHON_SITELIBDIR}/numarray:${PORTSDIR}/math/py-numarray +RUN_DEPENDS+= ${PYTHON_SITELIBDIR}/numarray:${PORTSDIR}/math/py-numarray \ ${PYTHON_SITELIBDIR}/matplotlib:${PORTSDIR}/math/py-matplotlib CONFIGURE_ENV+= PYTHON_VERSION=${_PYTHON_VERSION} CONFIGURE_ARGS+=--with-python=${PYTHONBASE} diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile index f66960d3f92f..d0fdd944a3eb 100644 --- a/science/gromacs/Makefile +++ b/science/gromacs/Makefile @@ -7,7 +7,7 @@ PORTNAME= gromacs PORTVERSION= 3.2.1 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= science MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ diff --git a/science/gromacs/pkg-plist b/science/gromacs/pkg-plist index 07fd083620c6..54530caa79f1 100644 --- a/science/gromacs/pkg-plist +++ b/science/gromacs/pkg-plist @@ -226,15 +226,22 @@ include/gromacs/xdrf.h include/gromacs/xtcio.h include/gromacs/xvgr.h lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.a +lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.la lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3 lib/libgmxana%%SUFFIX_D%%.a +lib/libgmxana%%SUFFIX_D%%.la lib/libgmxana%%SUFFIX_D%%.so +%%WITHOUT_MPI%%lib/libgmxana%%SUFFIX_D%%.a +%%WITHOUT_MPI%%lib/libgmxana%%SUFFIX_D%%.la +%%WITHOUT_MPI%%lib/libgmxana%%SUFFIX_D%%.so %%WITHOUT_MPI%%lib/libgmxana%%SUFFIX_D%%.so.3 %%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.a +%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.la %%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so %%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3 lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.a +lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.la lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3 %%DATADIR%%/html/gmxfaq.html diff --git a/science/hdf/Makefile b/science/hdf/Makefile index 8cb7747090db..5e144f954f68 100644 --- a/science/hdf/Makefile +++ b/science/hdf/Makefile @@ -7,6 +7,7 @@ PORTNAME= hdf PORTVERSION= 4.2r1 +PORTREVISION= 1 CATEGORIES= science archivers graphics MASTER_SITES= ftp://ftp.ncsa.uiuc.edu/HDF/HDF/HDF${PORTVERSION}/src/:src \ ftp://ftp.ncsa.uiuc.edu/HDF/HDF/Documentation/HDF4.2r0/:doc \ @@ -20,13 +21,12 @@ EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= glewis@FreeBSD.org COMMENT= Hierarchical Data Format library (from NCSA) -BUILD_DEPENDS= ${LOCALBASE}/bin/libtool15:${PORTSDIR}/devel/libtool15 LIB_DEPENDS= jpeg.9:${PORTSDIR}/graphics/jpeg \ sz.2:${PORTSDIR}/science/szip CONFLICTS= netcdf-* -GNU_CONFIGURE= yes +USE_AUTOTOOLS= libtool:15 CONFIGURE_ARGS+=--with-jpeg="${LOCALBASE}" \ --with-szlib="${LOCALBASE}" USE_REINPLACE= yes diff --git a/science/hdf/files/patch-hdf-src-Makefile.in b/science/hdf/files/patch-hdf-src-Makefile.in index cb12f0cf0c28..dd34959fd6ad 100644 --- a/science/hdf/files/patch-hdf-src-Makefile.in +++ b/science/hdf/files/patch-hdf-src-Makefile.in @@ -1,13 +1,5 @@ --- hdf/src/Makefile.in.orig Wed Dec 10 14:13:16 2003 +++ hdf/src/Makefile.in Tue Mar 15 16:30:15 2005 -@@ -82,6 +82,7 @@ - LEX_OUTPUT_ROOT = @LEX_OUTPUT_ROOT@ - LIBOBJS = @LIBOBJS@ - LIBS = @LIBS@ -+LIBTOOL = %%LOCALBASE%%/bin/libtool15 - LN_S = @LN_S@ - LTLIBOBJS = @LTLIBOBJS@ - MAINT = @MAINT@ @@ -89,7 +90,7 @@ MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@ MAKEINFO = @MAKEINFO@ diff --git a/science/hdf/files/patch-mfhdf-libsrc-Makefile.in b/science/hdf/files/patch-mfhdf-libsrc-Makefile.in index 590b6785a1be..eb77876886da 100644 --- a/science/hdf/files/patch-mfhdf-libsrc-Makefile.in +++ b/science/hdf/files/patch-mfhdf-libsrc-Makefile.in @@ -1,13 +1,5 @@ --- mfhdf/libsrc/Makefile.in.orig Wed Feb 9 18:35:08 2005 +++ mfhdf/libsrc/Makefile.in Wed Mar 16 12:05:19 2005 -@@ -82,6 +82,7 @@ - LEX_OUTPUT_ROOT = @LEX_OUTPUT_ROOT@ - LIBOBJS = @LIBOBJS@ - LIBS = @LIBS@ -+LIBTOOL = %%LOCALBASE%%/bin/libtool15 - LN_S = @LN_S@ - LTLIBOBJS = @LTLIBOBJS@ - MAINT = @MAINT@ @@ -89,7 +90,7 @@ MAINTAINER_MODE_TRUE = @MAINTAINER_MODE_TRUE@ MAKEINFO = @MAKEINFO@ diff --git a/science/hdf/pkg-plist b/science/hdf/pkg-plist index bb1dfb6683bd..ddcb0986f58f 100644 --- a/science/hdf/pkg-plist +++ b/science/hdf/pkg-plist @@ -75,9 +75,11 @@ include/tbbt.h include/vattr.h include/vg.h lib/libdf.a +lib/libdf.la lib/libdf.so lib/libdf.so.1 lib/libmfhdf.a +lib/libmfhdf.la lib/libmfhdf.so lib/libmfhdf.so.2 %%PORTDOCS%%%%DOCSDIR%%/HDF41r5_SpecDG.pdf diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile index 3cc1a303cf1d..92d96178358b 100644 --- a/science/hdf5-18/Makefile +++ b/science/hdf5-18/Makefile @@ -8,6 +8,7 @@ PORTNAME= hdf5 PORTVERSION= 1.6.4 +PORTREVISION= 1 CATEGORIES= science archivers graphics MASTER_SITES= ftp://hdf.ncsa.uiuc.edu/pub/outgoing/hdf5/${PORTVERSION}/ @@ -15,7 +16,7 @@ MAINTAINER= koziol@ncsa.uiuc.edu COMMENT= Hierarchical Data Format library (from NCSA) USE_REINPLACE= yes -USE_AUTOTOOLS= libtool:13 +GNU_CONFIGURE= yes LIBTOOLFILES= configure c++/configure CONFIGURE_TARGET= --build=${ARCH}-portbld-freebsd${OSREL} CONFIGURE_ARGS= --enable-cxx --enable-production \ diff --git a/science/hdf5-18/pkg-plist b/science/hdf5-18/pkg-plist index 98ac946d56b3..56a3202245ce 100644 --- a/science/hdf5-18/pkg-plist +++ b/science/hdf5-18/pkg-plist @@ -81,12 +81,15 @@ include/H5pubconf.h include/H5public.h include/hdf5.h lib/libhdf5.a +lib/libhdf5.la lib/libhdf5.settings lib/libhdf5.so lib/libhdf5.so.0 lib/libhdf5_cpp.a +lib/libhdf5_cpp.la lib/libhdf5_cpp.settings lib/libhdf5_hl.a +lib/libhdf5_hl.la lib/libhdf5_hl.so lib/libhdf5_hl.so.0 %%EXAMPLESDIR%%/c/h5_attribute.c diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile index 3cc1a303cf1d..92d96178358b 100644 --- a/science/hdf5/Makefile +++ b/science/hdf5/Makefile @@ -8,6 +8,7 @@ PORTNAME= hdf5 PORTVERSION= 1.6.4 +PORTREVISION= 1 CATEGORIES= science archivers graphics MASTER_SITES= ftp://hdf.ncsa.uiuc.edu/pub/outgoing/hdf5/${PORTVERSION}/ @@ -15,7 +16,7 @@ MAINTAINER= koziol@ncsa.uiuc.edu COMMENT= Hierarchical Data Format library (from NCSA) USE_REINPLACE= yes -USE_AUTOTOOLS= libtool:13 +GNU_CONFIGURE= yes LIBTOOLFILES= configure c++/configure CONFIGURE_TARGET= --build=${ARCH}-portbld-freebsd${OSREL} CONFIGURE_ARGS= --enable-cxx --enable-production \ diff --git a/science/hdf5/pkg-plist b/science/hdf5/pkg-plist index 98ac946d56b3..56a3202245ce 100644 --- a/science/hdf5/pkg-plist +++ b/science/hdf5/pkg-plist @@ -81,12 +81,15 @@ include/H5pubconf.h include/H5public.h include/hdf5.h lib/libhdf5.a +lib/libhdf5.la lib/libhdf5.settings lib/libhdf5.so lib/libhdf5.so.0 lib/libhdf5_cpp.a +lib/libhdf5_cpp.la lib/libhdf5_cpp.settings lib/libhdf5_hl.a +lib/libhdf5_hl.la lib/libhdf5_hl.so lib/libhdf5_hl.so.0 %%EXAMPLESDIR%%/c/h5_attribute.c diff --git a/science/kst/Makefile b/science/kst/Makefile index 847d69c39496..7eedfb986eaf 100644 --- a/science/kst/Makefile +++ b/science/kst/Makefile @@ -6,7 +6,7 @@ PORTNAME= kst PORTVERSION= 0.99 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science kde MASTER_SITES= ${MASTER_SITE_KDE} \ http://omega.astro.utoronto.ca/${PORTNAME}/ @@ -20,7 +20,7 @@ LIB_DEPENDS= cfitsio.0:${PORTSDIR}/astro/cfitsio \ USE_KDELIBS_VER=3 USE_GMAKE= yes -GNU_CONFIGURE= yes +USE_AUTOTOOLS= libtool:15 USE_REINPLACE= yes post-patch: diff --git a/science/kst/pkg-plist b/science/kst/pkg-plist index fed9070dcc2f..000dfa595d6a 100644 --- a/science/kst/pkg-plist +++ b/science/kst/pkg-plist @@ -3,126 +3,169 @@ bin/kst bin/kstplugineditor include/kstdatasource.h include/kstobject.h +lib/kde3/kstdata_ascii.a lib/kde3/kstdata_ascii.la lib/kde3/kstdata_ascii.so +lib/kde3/kstdata_dirfile.a lib/kde3/kstdata_dirfile.la lib/kde3/kstdata_dirfile.so +lib/kde3/kstdata_frame.a lib/kde3/kstdata_frame.la lib/kde3/kstdata_frame.so +lib/kde3/kstdata_indirect.a lib/kde3/kstdata_indirect.la lib/kde3/kstdata_indirect.so +lib/kde3/kstdata_lfiio.a lib/kde3/kstdata_lfiio.la lib/kde3/kstdata_lfiio.so +lib/kde3/kstextension_elog.a lib/kde3/kstextension_elog.la lib/kde3/kstextension_elog.so +lib/kde3/kstplugins/autocorrelate.a lib/kde3/kstplugins/autocorrelate.la lib/kde3/kstplugins/autocorrelate.so lib/kde3/kstplugins/autocorrelate.xml +lib/kde3/kstplugins/bin.a lib/kde3/kstplugins/bin.la lib/kde3/kstplugins/bin.so lib/kde3/kstplugins/bin.xml +lib/kde3/kstplugins/butterworth_bandpass.a lib/kde3/kstplugins/butterworth_bandpass.la lib/kde3/kstplugins/butterworth_bandpass.so lib/kde3/kstplugins/butterworth_bandpass.xml +lib/kde3/kstplugins/butterworth_bandstop.a lib/kde3/kstplugins/butterworth_bandstop.la lib/kde3/kstplugins/butterworth_bandstop.so lib/kde3/kstplugins/butterworth_bandstop.xml +lib/kde3/kstplugins/butterworth_highpass.a lib/kde3/kstplugins/butterworth_highpass.la lib/kde3/kstplugins/butterworth_highpass.so lib/kde3/kstplugins/butterworth_highpass.xml +lib/kde3/kstplugins/butterworth_lowpass.a lib/kde3/kstplugins/butterworth_lowpass.la lib/kde3/kstplugins/butterworth_lowpass.so lib/kde3/kstplugins/butterworth_lowpass.xml +lib/kde3/kstplugins/chop.a lib/kde3/kstplugins/chop.la lib/kde3/kstplugins/chop.so lib/kde3/kstplugins/chop.xml +lib/kde3/kstplugins/convolve.a lib/kde3/kstplugins/convolve.la lib/kde3/kstplugins/convolve.so lib/kde3/kstplugins/convolve.xml +lib/kde3/kstplugins/crosscorrelate.a lib/kde3/kstplugins/crosscorrelate.la lib/kde3/kstplugins/crosscorrelate.so lib/kde3/kstplugins/crosscorrelate.xml +lib/kde3/kstplugins/crossspectrum.a lib/kde3/kstplugins/crossspectrum.la lib/kde3/kstplugins/crossspectrum.so lib/kde3/kstplugins/crossspectrum.xml +lib/kde3/kstplugins/deconvolve.a lib/kde3/kstplugins/deconvolve.la lib/kde3/kstplugins/deconvolve.so lib/kde3/kstplugins/deconvolve.xml +lib/kde3/kstplugins/kstfit_exponential.a lib/kde3/kstplugins/kstfit_exponential.la lib/kde3/kstplugins/kstfit_exponential.so lib/kde3/kstplugins/kstfit_exponential.xml +lib/kde3/kstplugins/kstfit_exponential_weighted.a lib/kde3/kstplugins/kstfit_exponential_weighted.la lib/kde3/kstplugins/kstfit_exponential_weighted.so lib/kde3/kstplugins/kstfit_exponential_weighted.xml +lib/kde3/kstplugins/kstfit_gaussian.a lib/kde3/kstplugins/kstfit_gaussian.la lib/kde3/kstplugins/kstfit_gaussian.so lib/kde3/kstplugins/kstfit_gaussian.xml +lib/kde3/kstplugins/kstfit_gaussian_weighted.a lib/kde3/kstplugins/kstfit_gaussian_weighted.la lib/kde3/kstplugins/kstfit_gaussian_weighted.so lib/kde3/kstplugins/kstfit_gaussian_weighted.xml +lib/kde3/kstplugins/kstfit_gradient_unweighted.a lib/kde3/kstplugins/kstfit_gradient_unweighted.la lib/kde3/kstplugins/kstfit_gradient_unweighted.so lib/kde3/kstplugins/kstfit_gradient_unweighted.xml +lib/kde3/kstplugins/kstfit_gradient_weighted.a lib/kde3/kstplugins/kstfit_gradient_weighted.la lib/kde3/kstplugins/kstfit_gradient_weighted.so lib/kde3/kstplugins/kstfit_gradient_weighted.xml +lib/kde3/kstplugins/kstfit_linear_unweighted.a lib/kde3/kstplugins/kstfit_linear_unweighted.la lib/kde3/kstplugins/kstfit_linear_unweighted.so lib/kde3/kstplugins/kstfit_linear_unweighted.xml +lib/kde3/kstplugins/kstfit_linear_weighted.a lib/kde3/kstplugins/kstfit_linear_weighted.la lib/kde3/kstplugins/kstfit_linear_weighted.so lib/kde3/kstplugins/kstfit_linear_weighted.xml +lib/kde3/kstplugins/kstfit_lorentzian.a lib/kde3/kstplugins/kstfit_lorentzian.la lib/kde3/kstplugins/kstfit_lorentzian.so lib/kde3/kstplugins/kstfit_lorentzian.xml +lib/kde3/kstplugins/kstfit_lorentzian_weighted.a lib/kde3/kstplugins/kstfit_lorentzian_weighted.la lib/kde3/kstplugins/kstfit_lorentzian_weighted.so lib/kde3/kstplugins/kstfit_lorentzian_weighted.xml +lib/kde3/kstplugins/kstfit_polynomial_unweighted.a lib/kde3/kstplugins/kstfit_polynomial_unweighted.la lib/kde3/kstplugins/kstfit_polynomial_unweighted.so lib/kde3/kstplugins/kstfit_polynomial_unweighted.xml +lib/kde3/kstplugins/kstfit_polynomial_weighted.a lib/kde3/kstplugins/kstfit_polynomial_weighted.la lib/kde3/kstplugins/kstfit_polynomial_weighted.so lib/kde3/kstplugins/kstfit_polynomial_weighted.xml +lib/kde3/kstplugins/kstfit_sinusoid_unweighted.a lib/kde3/kstplugins/kstfit_sinusoid_unweighted.la lib/kde3/kstplugins/kstfit_sinusoid_unweighted.so lib/kde3/kstplugins/kstfit_sinusoid_unweighted.xml +lib/kde3/kstplugins/kstfit_sinusoid_weighted.a lib/kde3/kstplugins/kstfit_sinusoid_weighted.la lib/kde3/kstplugins/kstfit_sinusoid_weighted.so lib/kde3/kstplugins/kstfit_sinusoid_weighted.xml +lib/kde3/kstplugins/kstinterp_akima.a lib/kde3/kstplugins/kstinterp_akima.la lib/kde3/kstplugins/kstinterp_akima.so lib/kde3/kstplugins/kstinterp_akima.xml +lib/kde3/kstplugins/kstinterp_akima_periodic.a lib/kde3/kstplugins/kstinterp_akima_periodic.la lib/kde3/kstplugins/kstinterp_akima_periodic.so lib/kde3/kstplugins/kstinterp_akima_periodic.xml +lib/kde3/kstplugins/kstinterp_cspline.a lib/kde3/kstplugins/kstinterp_cspline.la lib/kde3/kstplugins/kstinterp_cspline.so lib/kde3/kstplugins/kstinterp_cspline.xml +lib/kde3/kstplugins/kstinterp_cspline_periodic.a lib/kde3/kstplugins/kstinterp_cspline_periodic.la lib/kde3/kstplugins/kstinterp_cspline_periodic.so lib/kde3/kstplugins/kstinterp_cspline_periodic.xml +lib/kde3/kstplugins/kstinterp_linear.a lib/kde3/kstplugins/kstinterp_linear.la lib/kde3/kstplugins/kstinterp_linear.so lib/kde3/kstplugins/kstinterp_linear.xml +lib/kde3/kstplugins/kstinterp_polynomial.a lib/kde3/kstplugins/kstinterp_polynomial.la lib/kde3/kstplugins/kstinterp_polynomial.so lib/kde3/kstplugins/kstinterp_polynomial.xml +lib/kde3/kstplugins/linefit.a lib/kde3/kstplugins/linefit.la lib/kde3/kstplugins/linefit.so lib/kde3/kstplugins/linefit.xml +lib/kde3/kstplugins/noise_addition.a lib/kde3/kstplugins/noise_addition.la lib/kde3/kstplugins/noise_addition.so lib/kde3/kstplugins/noise_addition.xml +lib/kde3/kstplugins/periodogram.a lib/kde3/kstplugins/periodogram.la lib/kde3/kstplugins/periodogram.so lib/kde3/kstplugins/periodogram.xml +lib/kde3/kstplugins/phase.a lib/kde3/kstplugins/phase.la lib/kde3/kstplugins/phase.so lib/kde3/kstplugins/phase.xml +lib/kde3/kstplugins/statistics.a lib/kde3/kstplugins/statistics.la lib/kde3/kstplugins/statistics.so lib/kde3/kstplugins/statistics.xml +lib/libkst.a lib/libkst.la lib/libkst.so lib/libkst.so.1 diff --git a/science/kst2/Makefile b/science/kst2/Makefile index 847d69c39496..7eedfb986eaf 100644 --- a/science/kst2/Makefile +++ b/science/kst2/Makefile @@ -6,7 +6,7 @@ PORTNAME= kst PORTVERSION= 0.99 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science kde MASTER_SITES= ${MASTER_SITE_KDE} \ http://omega.astro.utoronto.ca/${PORTNAME}/ @@ -20,7 +20,7 @@ LIB_DEPENDS= cfitsio.0:${PORTSDIR}/astro/cfitsio \ USE_KDELIBS_VER=3 USE_GMAKE= yes -GNU_CONFIGURE= yes +USE_AUTOTOOLS= libtool:15 USE_REINPLACE= yes post-patch: diff --git a/science/kst2/pkg-plist b/science/kst2/pkg-plist index fed9070dcc2f..000dfa595d6a 100644 --- a/science/kst2/pkg-plist +++ b/science/kst2/pkg-plist @@ -3,126 +3,169 @@ bin/kst bin/kstplugineditor include/kstdatasource.h include/kstobject.h +lib/kde3/kstdata_ascii.a lib/kde3/kstdata_ascii.la lib/kde3/kstdata_ascii.so +lib/kde3/kstdata_dirfile.a lib/kde3/kstdata_dirfile.la lib/kde3/kstdata_dirfile.so +lib/kde3/kstdata_frame.a lib/kde3/kstdata_frame.la lib/kde3/kstdata_frame.so +lib/kde3/kstdata_indirect.a lib/kde3/kstdata_indirect.la lib/kde3/kstdata_indirect.so +lib/kde3/kstdata_lfiio.a lib/kde3/kstdata_lfiio.la lib/kde3/kstdata_lfiio.so +lib/kde3/kstextension_elog.a lib/kde3/kstextension_elog.la lib/kde3/kstextension_elog.so +lib/kde3/kstplugins/autocorrelate.a lib/kde3/kstplugins/autocorrelate.la lib/kde3/kstplugins/autocorrelate.so lib/kde3/kstplugins/autocorrelate.xml +lib/kde3/kstplugins/bin.a lib/kde3/kstplugins/bin.la lib/kde3/kstplugins/bin.so lib/kde3/kstplugins/bin.xml +lib/kde3/kstplugins/butterworth_bandpass.a lib/kde3/kstplugins/butterworth_bandpass.la lib/kde3/kstplugins/butterworth_bandpass.so lib/kde3/kstplugins/butterworth_bandpass.xml +lib/kde3/kstplugins/butterworth_bandstop.a lib/kde3/kstplugins/butterworth_bandstop.la lib/kde3/kstplugins/butterworth_bandstop.so lib/kde3/kstplugins/butterworth_bandstop.xml +lib/kde3/kstplugins/butterworth_highpass.a lib/kde3/kstplugins/butterworth_highpass.la lib/kde3/kstplugins/butterworth_highpass.so lib/kde3/kstplugins/butterworth_highpass.xml +lib/kde3/kstplugins/butterworth_lowpass.a lib/kde3/kstplugins/butterworth_lowpass.la lib/kde3/kstplugins/butterworth_lowpass.so lib/kde3/kstplugins/butterworth_lowpass.xml +lib/kde3/kstplugins/chop.a lib/kde3/kstplugins/chop.la lib/kde3/kstplugins/chop.so lib/kde3/kstplugins/chop.xml +lib/kde3/kstplugins/convolve.a lib/kde3/kstplugins/convolve.la lib/kde3/kstplugins/convolve.so lib/kde3/kstplugins/convolve.xml +lib/kde3/kstplugins/crosscorrelate.a lib/kde3/kstplugins/crosscorrelate.la lib/kde3/kstplugins/crosscorrelate.so lib/kde3/kstplugins/crosscorrelate.xml +lib/kde3/kstplugins/crossspectrum.a lib/kde3/kstplugins/crossspectrum.la lib/kde3/kstplugins/crossspectrum.so lib/kde3/kstplugins/crossspectrum.xml +lib/kde3/kstplugins/deconvolve.a lib/kde3/kstplugins/deconvolve.la lib/kde3/kstplugins/deconvolve.so lib/kde3/kstplugins/deconvolve.xml +lib/kde3/kstplugins/kstfit_exponential.a lib/kde3/kstplugins/kstfit_exponential.la lib/kde3/kstplugins/kstfit_exponential.so lib/kde3/kstplugins/kstfit_exponential.xml +lib/kde3/kstplugins/kstfit_exponential_weighted.a lib/kde3/kstplugins/kstfit_exponential_weighted.la lib/kde3/kstplugins/kstfit_exponential_weighted.so lib/kde3/kstplugins/kstfit_exponential_weighted.xml +lib/kde3/kstplugins/kstfit_gaussian.a lib/kde3/kstplugins/kstfit_gaussian.la lib/kde3/kstplugins/kstfit_gaussian.so lib/kde3/kstplugins/kstfit_gaussian.xml +lib/kde3/kstplugins/kstfit_gaussian_weighted.a lib/kde3/kstplugins/kstfit_gaussian_weighted.la lib/kde3/kstplugins/kstfit_gaussian_weighted.so lib/kde3/kstplugins/kstfit_gaussian_weighted.xml +lib/kde3/kstplugins/kstfit_gradient_unweighted.a lib/kde3/kstplugins/kstfit_gradient_unweighted.la lib/kde3/kstplugins/kstfit_gradient_unweighted.so lib/kde3/kstplugins/kstfit_gradient_unweighted.xml +lib/kde3/kstplugins/kstfit_gradient_weighted.a lib/kde3/kstplugins/kstfit_gradient_weighted.la lib/kde3/kstplugins/kstfit_gradient_weighted.so lib/kde3/kstplugins/kstfit_gradient_weighted.xml +lib/kde3/kstplugins/kstfit_linear_unweighted.a lib/kde3/kstplugins/kstfit_linear_unweighted.la lib/kde3/kstplugins/kstfit_linear_unweighted.so lib/kde3/kstplugins/kstfit_linear_unweighted.xml +lib/kde3/kstplugins/kstfit_linear_weighted.a lib/kde3/kstplugins/kstfit_linear_weighted.la lib/kde3/kstplugins/kstfit_linear_weighted.so lib/kde3/kstplugins/kstfit_linear_weighted.xml +lib/kde3/kstplugins/kstfit_lorentzian.a lib/kde3/kstplugins/kstfit_lorentzian.la lib/kde3/kstplugins/kstfit_lorentzian.so lib/kde3/kstplugins/kstfit_lorentzian.xml +lib/kde3/kstplugins/kstfit_lorentzian_weighted.a lib/kde3/kstplugins/kstfit_lorentzian_weighted.la lib/kde3/kstplugins/kstfit_lorentzian_weighted.so lib/kde3/kstplugins/kstfit_lorentzian_weighted.xml +lib/kde3/kstplugins/kstfit_polynomial_unweighted.a lib/kde3/kstplugins/kstfit_polynomial_unweighted.la lib/kde3/kstplugins/kstfit_polynomial_unweighted.so lib/kde3/kstplugins/kstfit_polynomial_unweighted.xml +lib/kde3/kstplugins/kstfit_polynomial_weighted.a lib/kde3/kstplugins/kstfit_polynomial_weighted.la lib/kde3/kstplugins/kstfit_polynomial_weighted.so lib/kde3/kstplugins/kstfit_polynomial_weighted.xml +lib/kde3/kstplugins/kstfit_sinusoid_unweighted.a lib/kde3/kstplugins/kstfit_sinusoid_unweighted.la lib/kde3/kstplugins/kstfit_sinusoid_unweighted.so lib/kde3/kstplugins/kstfit_sinusoid_unweighted.xml +lib/kde3/kstplugins/kstfit_sinusoid_weighted.a lib/kde3/kstplugins/kstfit_sinusoid_weighted.la lib/kde3/kstplugins/kstfit_sinusoid_weighted.so lib/kde3/kstplugins/kstfit_sinusoid_weighted.xml +lib/kde3/kstplugins/kstinterp_akima.a lib/kde3/kstplugins/kstinterp_akima.la lib/kde3/kstplugins/kstinterp_akima.so lib/kde3/kstplugins/kstinterp_akima.xml +lib/kde3/kstplugins/kstinterp_akima_periodic.a lib/kde3/kstplugins/kstinterp_akima_periodic.la lib/kde3/kstplugins/kstinterp_akima_periodic.so lib/kde3/kstplugins/kstinterp_akima_periodic.xml +lib/kde3/kstplugins/kstinterp_cspline.a lib/kde3/kstplugins/kstinterp_cspline.la lib/kde3/kstplugins/kstinterp_cspline.so lib/kde3/kstplugins/kstinterp_cspline.xml +lib/kde3/kstplugins/kstinterp_cspline_periodic.a lib/kde3/kstplugins/kstinterp_cspline_periodic.la lib/kde3/kstplugins/kstinterp_cspline_periodic.so lib/kde3/kstplugins/kstinterp_cspline_periodic.xml +lib/kde3/kstplugins/kstinterp_linear.a lib/kde3/kstplugins/kstinterp_linear.la lib/kde3/kstplugins/kstinterp_linear.so lib/kde3/kstplugins/kstinterp_linear.xml +lib/kde3/kstplugins/kstinterp_polynomial.a lib/kde3/kstplugins/kstinterp_polynomial.la lib/kde3/kstplugins/kstinterp_polynomial.so lib/kde3/kstplugins/kstinterp_polynomial.xml +lib/kde3/kstplugins/linefit.a lib/kde3/kstplugins/linefit.la lib/kde3/kstplugins/linefit.so lib/kde3/kstplugins/linefit.xml +lib/kde3/kstplugins/noise_addition.a lib/kde3/kstplugins/noise_addition.la lib/kde3/kstplugins/noise_addition.so lib/kde3/kstplugins/noise_addition.xml +lib/kde3/kstplugins/periodogram.a lib/kde3/kstplugins/periodogram.la lib/kde3/kstplugins/periodogram.so lib/kde3/kstplugins/periodogram.xml +lib/kde3/kstplugins/phase.a lib/kde3/kstplugins/phase.la lib/kde3/kstplugins/phase.so lib/kde3/kstplugins/phase.xml +lib/kde3/kstplugins/statistics.a lib/kde3/kstplugins/statistics.la lib/kde3/kstplugins/statistics.so lib/kde3/kstplugins/statistics.xml +lib/libkst.a lib/libkst.la lib/libkst.so lib/libkst.so.1 diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile index cc63e7d5791b..ff41cb48d891 100644 --- a/science/mbdyn/Makefile +++ b/science/mbdyn/Makefile @@ -19,7 +19,6 @@ BUILD_DEPENDS= ${LOCALBASE}/lib/libumfpack.a:${PORTSDIR}/math/umfpack GNU_CONFIGURE= yes USE_GMAKE= yes -USE_AUTOTOOLS= libtool:13:inc CONFIGURE_ARGS+= --program-prefix='' --with-umfpack=yes CPPFLAGS+= -I${LOCALBASE}/include/UMFPACK ${PTHREAD_CFLAGS} LDFLAGS+= -lm -L${LOCALBASE}/lib ${PTHREAD_LIBS} diff --git a/science/minc/Makefile b/science/minc/Makefile index a9bc2faa5917..b933be9b67c0 100644 --- a/science/minc/Makefile +++ b/science/minc/Makefile @@ -17,6 +17,7 @@ PORTNAME= minc PORTVERSION= 1.4 +PORTREVISION= 1 CATEGORIES= science biology MASTER_SITES= http://www.bic.mni.mcgill.ca/software/distribution/packages/ \ http://www.neuro.mcw.edu/~bacon/Ports/distfiles/ @@ -27,8 +28,11 @@ COMMENT= Medical Imaging NetCDF LIB_DEPENDS= netcdf.1:${PORTSDIR}/science/netcdf INSTALLS_SHLIB= yes - -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes +CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" \ + LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib" +CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL} +CONFIGURE_ARGS= --enable-static=yes --enable-shared=yes # Build parameters #WRKSRC= ${WRKDIR}/minc-${PORTVERSION} @@ -67,12 +71,8 @@ MAN1= dcm2mnc.1 \ voxeltoworld.1 \ xfmconcat.1 \ xfminvert.1 -MAN3= ParseArgv.3 -CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" \ - LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib" -CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes -CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL} +MAN3= ParseArgv.3 post-install: ${CAT} ${PKGMESSAGE} diff --git a/science/minc/pkg-plist b/science/minc/pkg-plist index 95cdcace1c14..293bf89a7dff 100644 --- a/science/minc/pkg-plist +++ b/science/minc/pkg-plist @@ -58,9 +58,11 @@ include/volume_io/volume.h include/volume_io/volume_cache.h include/voxel_loop.h lib/libminc.a +lib/libminc.la lib/libminc.so lib/libminc.so.1 lib/libvolume_io.a +lib/libvolume_io.la lib/libvolume_io.so lib/libvolume_io.so.0 @dirrm include/volume_io diff --git a/science/minc2/Makefile b/science/minc2/Makefile index a9bc2faa5917..b933be9b67c0 100644 --- a/science/minc2/Makefile +++ b/science/minc2/Makefile @@ -17,6 +17,7 @@ PORTNAME= minc PORTVERSION= 1.4 +PORTREVISION= 1 CATEGORIES= science biology MASTER_SITES= http://www.bic.mni.mcgill.ca/software/distribution/packages/ \ http://www.neuro.mcw.edu/~bacon/Ports/distfiles/ @@ -27,8 +28,11 @@ COMMENT= Medical Imaging NetCDF LIB_DEPENDS= netcdf.1:${PORTSDIR}/science/netcdf INSTALLS_SHLIB= yes - -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes +CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" \ + LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib" +CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL} +CONFIGURE_ARGS= --enable-static=yes --enable-shared=yes # Build parameters #WRKSRC= ${WRKDIR}/minc-${PORTVERSION} @@ -67,12 +71,8 @@ MAN1= dcm2mnc.1 \ voxeltoworld.1 \ xfmconcat.1 \ xfminvert.1 -MAN3= ParseArgv.3 -CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include" \ - LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib" -CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes -CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL} +MAN3= ParseArgv.3 post-install: ${CAT} ${PKGMESSAGE} diff --git a/science/minc2/pkg-plist b/science/minc2/pkg-plist index 95cdcace1c14..293bf89a7dff 100644 --- a/science/minc2/pkg-plist +++ b/science/minc2/pkg-plist @@ -58,9 +58,11 @@ include/volume_io/volume.h include/volume_io/volume_cache.h include/voxel_loop.h lib/libminc.a +lib/libminc.la lib/libminc.so lib/libminc.so.1 lib/libvolume_io.a +lib/libvolume_io.la lib/libvolume_io.so lib/libvolume_io.so.0 @dirrm include/volume_io diff --git a/science/openbabel/Makefile b/science/openbabel/Makefile index bc6fb06c1d7f..2f0d69eb3765 100644 --- a/science/openbabel/Makefile +++ b/science/openbabel/Makefile @@ -8,6 +8,7 @@ PORTNAME= openbabel PORTVERSION= 2.0.0 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= ${MASTER_SITE_SOURCEFORGE} MASTER_SITE_SUBDIR= ${PORTNAME} @@ -17,7 +18,7 @@ COMMENT= Chemistry file translation program USE_GCC= 3.4+ USE_GNOME= gnomehack gnometarget libxml2 -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes INSTALLS_SHLIB= yes MAN1= obchiral.1 obfit.1 obgrep.1 obprop.1 obrotate.1 openbabel.1 diff --git a/science/openbabel/pkg-plist b/science/openbabel/pkg-plist index 78bb358db2f7..19e1d7eb1d65 100644 --- a/science/openbabel/pkg-plist +++ b/science/openbabel/pkg-plist @@ -63,68 +63,186 @@ include/openbabel-2.0/openbabel/rotamer.h include/openbabel-2.0/openbabel/rotor.h include/openbabel-2.0/openbabel/typer.h lib/libinchi.a +lib/libinchi.la lib/libinchi.so lib/libinchi.so.0 lib/libopenbabel.a +lib/libopenbabel.la lib/libopenbabel.so lib/libopenbabel.so.1 +lib/openbabel/APIInterface.a +lib/openbabel/APIInterface.la lib/openbabel/APIInterface.so +lib/openbabel/CSRformat.a +lib/openbabel/CSRformat.la lib/openbabel/CSRformat.so +lib/openbabel/PQSformat.a +lib/openbabel/PQSformat.la lib/openbabel/PQSformat.so +lib/openbabel/alchemyformat.a +lib/openbabel/alchemyformat.la lib/openbabel/alchemyformat.so +lib/openbabel/amberformat.a +lib/openbabel/amberformat.la lib/openbabel/amberformat.so +lib/openbabel/balstformat.a +lib/openbabel/balstformat.la lib/openbabel/balstformat.so +lib/openbabel/bgfformat.a +lib/openbabel/bgfformat.la lib/openbabel/bgfformat.so +lib/openbabel/boxformat.a +lib/openbabel/boxformat.la lib/openbabel/boxformat.so +lib/openbabel/cacaoformat.a +lib/openbabel/cacaoformat.la lib/openbabel/cacaoformat.so +lib/openbabel/cacheformat.a +lib/openbabel/cacheformat.la lib/openbabel/cacheformat.so +lib/openbabel/carformat.a +lib/openbabel/carformat.la lib/openbabel/carformat.so +lib/openbabel/cccformat.a +lib/openbabel/cccformat.la lib/openbabel/cccformat.so +lib/openbabel/chem3dformat.a +lib/openbabel/chem3dformat.la lib/openbabel/chem3dformat.so +lib/openbabel/chemdrawformat.a +lib/openbabel/chemdrawformat.la lib/openbabel/chemdrawformat.so +lib/openbabel/chemtoolformat.a +lib/openbabel/chemtoolformat.la lib/openbabel/chemtoolformat.so +lib/openbabel/cmlreactlformat.a +lib/openbabel/cmlreactlformat.la lib/openbabel/cmlreactlformat.so +lib/openbabel/copyformat.a +lib/openbabel/copyformat.la lib/openbabel/copyformat.so +lib/openbabel/crkformat.a +lib/openbabel/crkformat.la lib/openbabel/crkformat.so +lib/openbabel/cssrformat.a +lib/openbabel/cssrformat.la lib/openbabel/cssrformat.so +lib/openbabel/dmolformat.a +lib/openbabel/dmolformat.la lib/openbabel/dmolformat.so +lib/openbabel/fastsearchformat.a +lib/openbabel/fastsearchformat.la lib/openbabel/fastsearchformat.so +lib/openbabel/featformat.a +lib/openbabel/featformat.la lib/openbabel/featformat.so +lib/openbabel/fhformat.a +lib/openbabel/fhformat.la lib/openbabel/fhformat.so +lib/openbabel/fingerprintformat.a +lib/openbabel/fingerprintformat.la lib/openbabel/fingerprintformat.so +lib/openbabel/freefracformat.a +lib/openbabel/freefracformat.la lib/openbabel/freefracformat.so +lib/openbabel/gamessformat.a +lib/openbabel/gamessformat.la lib/openbabel/gamessformat.so +lib/openbabel/gaussformat.a +lib/openbabel/gaussformat.la lib/openbabel/gaussformat.so +lib/openbabel/ghemicalformat.a +lib/openbabel/ghemicalformat.la lib/openbabel/ghemicalformat.so +lib/openbabel/gromos96format.a +lib/openbabel/gromos96format.la lib/openbabel/gromos96format.so +lib/openbabel/hinformat.a +lib/openbabel/hinformat.la lib/openbabel/hinformat.so +lib/openbabel/inchiformat.a +lib/openbabel/inchiformat.la lib/openbabel/inchiformat.so +lib/openbabel/jaguarformat.a +lib/openbabel/jaguarformat.la lib/openbabel/jaguarformat.so +lib/openbabel/mdlformat.a +lib/openbabel/mdlformat.la lib/openbabel/mdlformat.so +lib/openbabel/mmodformat.a +lib/openbabel/mmodformat.la lib/openbabel/mmodformat.so +lib/openbabel/mol2format.a +lib/openbabel/mol2format.la lib/openbabel/mol2format.so +lib/openbabel/mopacformat.a +lib/openbabel/mopacformat.la lib/openbabel/mopacformat.so +lib/openbabel/mpdformat.a +lib/openbabel/mpdformat.la lib/openbabel/mpdformat.so +lib/openbabel/mpqcformat.a +lib/openbabel/mpqcformat.la lib/openbabel/mpqcformat.so +lib/openbabel/nwchemformat.a +lib/openbabel/nwchemformat.la lib/openbabel/nwchemformat.so +lib/openbabel/pcmodelformat.a +lib/openbabel/pcmodelformat.la lib/openbabel/pcmodelformat.so +lib/openbabel/pdbformat.a +lib/openbabel/pdbformat.la lib/openbabel/pdbformat.so +lib/openbabel/povrayformat.a +lib/openbabel/povrayformat.la lib/openbabel/povrayformat.so +lib/openbabel/pubchem.a +lib/openbabel/pubchem.la lib/openbabel/pubchem.so +lib/openbabel/qchemformat.a +lib/openbabel/qchemformat.la lib/openbabel/qchemformat.so +lib/openbabel/reportformat.a +lib/openbabel/reportformat.la lib/openbabel/reportformat.so +lib/openbabel/rxnformat.a +lib/openbabel/rxnformat.la lib/openbabel/rxnformat.so +lib/openbabel/shelxformat.a +lib/openbabel/shelxformat.la lib/openbabel/shelxformat.so +lib/openbabel/smilesformat.a +lib/openbabel/smilesformat.la lib/openbabel/smilesformat.so +lib/openbabel/tinkerformat.a +lib/openbabel/tinkerformat.la lib/openbabel/tinkerformat.so +lib/openbabel/turbomoleformat.a +lib/openbabel/turbomoleformat.la lib/openbabel/turbomoleformat.so +lib/openbabel/unichemformat.a +lib/openbabel/unichemformat.la lib/openbabel/unichemformat.so +lib/openbabel/viewmolformat.a +lib/openbabel/viewmolformat.la lib/openbabel/viewmolformat.so +lib/openbabel/xcmlformat.a +lib/openbabel/xcmlformat.la lib/openbabel/xcmlformat.so +lib/openbabel/xedformat.a +lib/openbabel/xedformat.la lib/openbabel/xedformat.so +lib/openbabel/xmlformat.a +lib/openbabel/xmlformat.la lib/openbabel/xmlformat.so +lib/openbabel/xyzformat.a +lib/openbabel/xyzformat.la lib/openbabel/xyzformat.so +lib/openbabel/yasaraformat.a +lib/openbabel/yasaraformat.la lib/openbabel/yasaraformat.so +lib/openbabel/zindoformat.a +lib/openbabel/zindoformat.la lib/openbabel/zindoformat.so libdata/pkgconfig/openbabel-2.0.pc %%DATADIR%%/%%VERSION%%/SMARTS_InteLigand.txt diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile index 741466eac83a..76fc3ad57d4c 100644 --- a/science/v_sim/Makefile +++ b/science/v_sim/Makefile @@ -16,7 +16,7 @@ USE_BZIP2= yes USE_GNOME= gtk20 USE_GL= yes USE_GMAKE= yes -USE_AUTOTOOLS= libtool:15 +GNU_CONFIGURE= yes CONFIGURE_ENV= CPPFLAGS="${CFLAGS} -I${X11BASE}/include -I${LOCALBASE}/include" \ LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib" USE_GCC= 3.4+ |