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authorThierry Thomas <thierry@FreeBSD.org>2009-03-23 18:27:37 +0000
committerThierry Thomas <thierry@FreeBSD.org>2009-03-23 18:27:37 +0000
commit3d2ad7d3f8c9bbb01d48c96a6f4a48730d56f3ac (patch)
tree9ad2bd5d9e94f3ca32d5b2d0066d2c824566ac17 /science
parentf5f39f3cbae0c40f4cb89392ab961925a9569070 (diff)
downloadports-3d2ad7d3f8c9bbb01d48c96a6f4a48730d56f3ac.tar.gz
ports-3d2ad7d3f8c9bbb01d48c96a6f4a48730d56f3ac.zip
Notes
Diffstat (limited to 'science')
-rw-r--r--science/abinit/Makefile55
-rw-r--r--science/abinit/distinfo6
-rw-r--r--science/abinit/files/patch-config+m4+init.m4104
-rw-r--r--science/abinit/files/patch-config.mk.in11
-rw-r--r--science/abinit/files/patch-configure27
-rw-r--r--science/abinit/pkg-plist2735
6 files changed, 2467 insertions, 471 deletions
diff --git a/science/abinit/Makefile b/science/abinit/Makefile
index a0d81d600099..2453a077f664 100644
--- a/science/abinit/Makefile
+++ b/science/abinit/Makefile
@@ -1,45 +1,70 @@
-# New ports collection makefile for: abinit
-# Date Created: 18 March 2004
-# Whom: NAKATA Maho <maho@FreeBSD.org>
+# New ports collection makefile for: abinit
+# Date Created: 18 March 2004
+# Whom: NAKATA Maho <maho@FreeBSD.org>
#
# $FreeBSD$
#
PORTNAME= abinit
-PORTVERSION= 5.2.4
-PORTREVISION= 3
+PORTVERSION= 5.6.5
CATEGORIES= science
-MASTER_SITES= ${MASTER_SITE_LOCAL:S|%SUBDIR%|maho/abinit|} \
- ftp://ftp.abinit.org/pub/abinitio/ABINIT_v${PORTVERSION}/
+MASTER_SITES= ftp://ftp.abinit.org/pub/abinitio/ABINIT_v${PORTVERSION}/
MAINTAINER= maho@FreeBSD.org
COMMENT= Abinit calculates electronic structure of systems
+LIB_DEPENDS= netcdff.4:${PORTSDIR}/science/netcdf-ftn
+
USE_FORTRAN= yes
USE_GMAKE= yes
+USE_PYTHON= yes
+USE_PERL5_BUILD=yes
GNU_CONFIGURE= yes
-USE_AUTOTOOLS= autoconf:262
+CONFIGURE_ENV= WGET=${TRUE}
+CONFIGURE_ARGS= --disable-wannier90 --disable-bigdft --disable-etsf-io \
+ --with-plugins-tardir=/dev/null \
+ --with-netcdf-includes="-I${LOCALBASE}/include" \
+ --with-netcdf-libs="-L${LOCALBASE}/lib -lnetcdff -lnetcdf"
+ALL_TARGET= all libabinit
+
+.if !defined(NOPORTDOCS)
+BUILD_DEPENDS+= latex:${PORTSDIR}/print/teTeX-base \
+ dvips:${PORTSDIR}/print/dvipsk-tetex \
+ markdown:${PORTSDIR}/textproc/markdown
+USE_GHOSTSCRIPT_BUILD= yes
+.endif
.include <bsd.port.pre.mk>
.if exists(${LOCALBASE}/lib/libatlas_r.so) && !defined(WITH_BLAS)
-WITH_ATLAS= yes
+WITH_ATLAS= yes
.endif
.if defined(WITH_ATLAS)
-LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
+LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
BLAS= -lf77blas -latlas
LAPACK= -lalapack
.else
-LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas
-LIB_DEPENDS+= lapack.4:${PORTSDIR}/math/lapack
+LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas
+LIB_DEPENDS+= lapack.4:${PORTSDIR}/math/lapack
BLAS= -lblas
LAPACK= -llapack
.endif
pre-configure:
- @(cd ${WRKSRC} && config/scripts/makemake)
+.if defined(NOPORTDOCS)
+ ${REINPLACE_CMD} -e '/^SUBDIRS =/s| doc||' ${WRKSRC}/Makefile.in
+.endif
+.if defined(NOPORTEXAMPLES)
+ ${REINPLACE_CMD} -e '/^SUBDIRS =/s| tests||' ${WRKSRC}/Makefile.in
+.endif
+
+post-install:
+ ${MKDIR} ${PREFIX}/lib
+.for lf in libabinip.a libabinis.a
+ ${INSTALL_DATA} ${WRKSRC}/${lf} ${PREFIX}/lib
+.endfor
-test:
- cd ${WRKSRC}/tests ; ${GMAKE} tests
+regression-test:
+ cd ${WRKSRC}/tests ; ${GMAKE} tests_min
.include <bsd.port.post.mk>
diff --git a/science/abinit/distinfo b/science/abinit/distinfo
index 5512e9fc5ab7..a6d8cbe3cfec 100644
--- a/science/abinit/distinfo
+++ b/science/abinit/distinfo
@@ -1,3 +1,3 @@
-MD5 (abinit-5.2.4.tar.gz) = ec6a91c77f425eda921e8d4280a7740c
-SHA256 (abinit-5.2.4.tar.gz) = 8f13a3af020fa4be9e0d6eada24c82c68612d24635ab880a4ccd7a2528e1b153
-SIZE (abinit-5.2.4.tar.gz) = 20979917
+MD5 (abinit-5.6.5.tar.gz) = 167ef71a21c27e52ef82d284a9835c91
+SHA256 (abinit-5.6.5.tar.gz) = 20b9cfcecb2fa238363e88b9b719e755e7bf2dd156c2216f43ec0c4b7be25fa0
+SIZE (abinit-5.6.5.tar.gz) = 30213023
diff --git a/science/abinit/files/patch-config+m4+init.m4 b/science/abinit/files/patch-config+m4+init.m4
deleted file mode 100644
index 7e4fa8944a41..000000000000
--- a/science/abinit/files/patch-config+m4+init.m4
+++ /dev/null
@@ -1,104 +0,0 @@
---- config/m4/init.m4.orig Tue Nov 28 15:12:04 2006
-+++ config/m4/init.m4 Sun Feb 25 16:51:02 2007
-@@ -142,6 +142,101 @@
- abi_cpu_bits="64"
- ;;
-
-+ i386-*freebsd*)
-+ dnl Pentium 3 ?
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model=`sysctl hw.model | grep 'Pentium III'`
-+ if test "${abi_cpu_model}" != ""; then
-+ abi_cpu_model="pentium3"
-+ abi_cpu_64bits="no"
-+ abi_cpu_bits="32"
-+ fi
-+ fi
-+ dnl Pentium 4 ?
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model=`sysctl hw.model | grep 'Intel(R) Pentium(R) 4'`
-+ if test "${abi_cpu_model}" != ""; then
-+ abi_cpu_model="pentium4"
-+ abi_cpu_64bits="no"
-+ abi_cpu_bits="32"
-+ fi
-+ fi
-+ dnl Pentium 4M ?
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model=`sysctl hw.model | grep 'Intel(R) Pentium(R) M'`
-+ if test "${abi_cpu_model}" != ""; then
-+ abi_cpu_model="pentium4"
-+ abi_cpu_64bits="no"
-+ abi_cpu_bits="32"
-+ fi
-+ fi
-+ dnl Unknown
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model="unknown"
-+ fi
-+ dnl The processor is anyway 32-bit
-+ abi_cpu_64bits="no"
-+ abi_cpu_bits="32"
-+ ;;
-+
-+ amd64-*freebsd*)
-+ dnl Opteron ?
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model=`sysctl hw.model | grep 'Opteron'`
-+ if test "${abi_cpu_model}" != ""; then
-+ abi_cpu_model="opteron"
-+ abi_cpu_64bits="yes"
-+ abi_cpu_bits="64"
-+ fi
-+ fi
-+ dnl Xeon ?
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model=`sysctl hw.model | grep 'Intel(R) XEON(TM)'`
-+ if test "${abi_cpu_model}" != ""; then
-+ abi_cpu_model="xeon"
-+ abi_cpu_64bits="yes"
-+ abi_cpu_bits="64"
-+ fi
-+ fi
-+ dnl Unknown
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model="unknown"
-+ fi
-+ dnl The processor is anyway 64-bit
-+ abi_cpu_64bits="yes"
-+ abi_cpu_bits="64"
-+ ;;
-+
-+ ia64-*freebsd*)
-+ dnl Itanium 1 ?
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model=`sysctl hw.model | grep 'Itanium 1'`
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model="itanium1"
-+ fi
-+ fi
-+ dnl Itanium 2 ?
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model=`sysctl hw.model | grep 'Itanium 2'`
-+ if test "${abi_cpu_model}" != ""; then
-+ abi_cpu_model="itanium2"
-+ fi
-+ fi
-+ dnl Unknown
-+ if test "${abi_cpu_model}" = ""; then
-+ abi_cpu_model="unknown"
-+ fi
-+ dnl The processor is anyway 64-bit
-+ abi_cpu_64bits="yes"
-+ abi_cpu_bits="64"
-+ ;;
-+
-+ sparc64-*freebsd*)
-+ abi_cpu_model="unknown"
-+ abi_cpu_64bits="yes"
-+ abi_cpu_bits="64"
-+ ;;
-+
- esac
-
- AC_SUBST(abi_cpu_model)
diff --git a/science/abinit/files/patch-config.mk.in b/science/abinit/files/patch-config.mk.in
new file mode 100644
index 000000000000..e69c33ab59cb
--- /dev/null
+++ b/science/abinit/files/patch-config.mk.in
@@ -0,0 +1,11 @@
+--- config.mk.in.orig 2009-02-22 07:08:32.000000000 +0100
++++ config.mk.in 2009-03-08 09:54:35.000000000 +0100
+@@ -41,7 +41,7 @@
+ PYTHON = @PYTHON@
+ LN_S = @LN_S@
+ EGREP = @EGREP@
+-MKDIR_P = @MKDIR_P@
++MKDIR_P = @abinit_builddir@/@MKDIR_P@
+
+ # Architecture
+ target = @target@
diff --git a/science/abinit/files/patch-configure b/science/abinit/files/patch-configure
new file mode 100644
index 000000000000..64c8c2e1efdf
--- /dev/null
+++ b/science/abinit/files/patch-configure
@@ -0,0 +1,27 @@
+--- configure.orig 2009-02-22 08:32:10.000000000 +0100
++++ configure 2009-03-09 20:01:48.000000000 +0100
+@@ -5151,15 +5151,15 @@
+ abinit_prefix="${prefix}"
+ fi
+
+- abinit_bindir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/bin"
+- abinit_chkdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/tests"
+- abinit_datdir="${abinit_prefix}/abinit"
+- abinit_docdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/doc"
+- abinit_incdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/include"
+- abinit_libdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/lib"
+- abinit_mandir="${abinit_prefix}/abinit/man"
+- abinit_rundir="${abinit_prefix}/abinit/bin"
+- abinit_wwwdir="${abinit_prefix}/abinit/${ABINIT_VERSION_BASE}/www"
++ abinit_bindir="${abinit_prefix}/bin"
++ abinit_chkdir="${abinit_prefix}/share/examples/abinit/tests"
++ abinit_datdir="${abinit_prefix}/share/abinit"
++ abinit_docdir="${abinit_prefix}/share/doc/abinit/"
++ abinit_incdir="${abinit_prefix}/include/abinit"
++ abinit_libdir="${abinit_prefix}/lib"
++ abinit_mandir="${abinit_prefix}/man"
++ abinit_rundir="${abinit_prefix}/bin"
++ abinit_wwwdir="${abinit_prefix}/www/abinit"
+
+
+
diff --git a/science/abinit/pkg-plist b/science/abinit/pkg-plist
index e78bfecd9df5..5b34abecc987 100644
--- a/science/abinit/pkg-plist
+++ b/science/abinit/pkg-plist
@@ -1,349 +1,2386 @@
-abinit/5.2/bin/abinis
-abinit/5.2/bin/abinitgw
-abinit/5.2/bin/mrgddb
-abinit/5.2/bin/mrggkk
-abinit/5.2/bin/mrgscr
-abinit/5.2/bin/anaddb
-abinit/5.2/bin/aim
-abinit/5.2/bin/cut3d
-abinit/5.2/bin/macroave
-abinit/5.2/bin/newsp
-abinit/5.2/bin/conducti
-abinit/5.2/bin/optic
-abinit/5.2/bin/lwf
-abinit/5.2/bin/band2eps
-abinit/5.2/bin/abinetcdf
-abinit/5.2/doc/macroave/macroave.tex
-abinit/5.2/doc/macroave/README
-abinit/5.2/doc/macroave/macroave.pdf
-abinit/5.2/doc/release_notes/release_notes_v4.7.html
-abinit/5.2/doc/release_notes/release_notes_v3.0.htm
-abinit/5.2/doc/release_notes/release_notes_v4.3.html
-abinit/5.2/doc/release_notes/release_notes_v2.3.htm
-abinit/5.2/doc/release_notes/release_notes_v4.2.htm
-abinit/5.2/doc/release_notes/release_notes_v4.6.html
-abinit/5.2/doc/release_notes/release_notes_v3.1.htm
-abinit/5.2/doc/release_notes/release_notes_v5.0.html
-abinit/5.2/doc/release_notes/release_notes_v4.0.htm
-abinit/5.2/doc/release_notes/release_notes_v4.4.html
-abinit/5.2/doc/release_notes/release_notes_v3.3.htm
-abinit/5.2/doc/release_notes/release_notes_v4.5.html
-abinit/5.2/doc/release_notes/release_notes_v3.2.htm
-abinit/5.2/doc/release_notes/release_notes_v3.4.htm
-abinit/5.2/doc/release_notes/release_notes_v4.1.htm
-abinit/5.2/doc/release_notes/release_notes_v5.1.html
-abinit/5.2/doc/release_notes/release_notes_v5.2.html
-abinit/5.2/doc/features/features_v4.6.html
-abinit/5.2/doc/features/features_v2.3.htm
-abinit/5.2/doc/features/features_v4.5.html
-abinit/5.2/doc/features/features_v3.1.htm
-abinit/5.2/doc/features/features_v4.4.html
-abinit/5.2/doc/features/features_v4.1.htm
-abinit/5.2/doc/features/features_v3.2.htm
-abinit/5.2/doc/features/features_v3.0.htm
-abinit/5.2/doc/features/features_v4.0.htm
-abinit/5.2/doc/features/features_v3.4.htm
-abinit/5.2/doc/features/features_v4.2.htm
-abinit/5.2/doc/features/features_v3.3.htm
-abinit/5.2/doc/features/features_v5.0.html
-abinit/5.2/doc/features/features_v4.7.html
-abinit/5.2/doc/features/features_v4.3.html
-abinit/5.2/doc/features/features.html
-abinit/5.2/doc/features/features_v5.1.html
-abinit/5.2/doc/features/features_v5.2.html
-abinit/5.2/doc/install_notes/install_v2.0.html
-abinit/5.2/doc/install_notes/install_v4.2.htm
-abinit/5.2/doc/install_notes/install_v1.8.html
-abinit/5.2/doc/install_notes/install_v3.1.htm
-abinit/5.2/doc/install_notes/install_v4.0.htm
-abinit/5.2/doc/install_notes/install_v4.6.html
-abinit/5.2/doc/install_notes/install_v3.2.htm
-abinit/5.2/doc/install_notes/install_v2.2.html
-abinit/5.2/doc/install_notes/install_v4.1.htm
-abinit/5.2/doc/install_notes/install_v4.3.html
-abinit/5.2/doc/install_notes/install.html
-abinit/5.2/doc/install_notes/install_v2.1.html
-abinit/5.2/doc/install_notes/install_v3.3.htm
-abinit/5.2/doc/install_notes/install_v1.7.html
-abinit/5.2/doc/install_notes/install_v1.9.html
-abinit/5.2/doc/install_notes/install_v3.0.htm
-abinit/5.2/doc/install_notes/install_v4.5.html
-abinit/5.2/doc/install_notes/install_v3.4.htm
-abinit/5.2/doc/install_notes/install_v4.7.html
-abinit/5.2/doc/install_notes/install_v2.3.htm
-abinit/5.2/doc/install_notes/install_v4.4.html
-abinit/5.2/doc/install_notes/install_v5.1.html
-abinit/5.2/doc/install_notes/install_v5.0.html
-abinit/5.2/doc/install_notes/install_v5.2.html
-abinit/5.2/doc/developers/strain_nonlocal/make_met2str.m
-abinit/5.2/doc/developers/strain_nonlocal/fort_fix3.scr
-abinit/5.2/doc/developers/strain_nonlocal/d2term1.out
-abinit/5.2/doc/developers/strain_nonlocal/fort_fixis.scr
-abinit/5.2/doc/developers/strain_nonlocal/make_metstr3.m
-abinit/5.2/doc/developers/strain_nonlocal/fort_2fix.scr
-abinit/5.2/doc/developers/strain_nonlocal/make_metintstrv.m
-abinit/5.2/doc/developers/strain_nonlocal/strainpert.pdf
-abinit/5.2/doc/developers/strain_nonlocal/d2term1.fort
-abinit/5.2/doc/developers/strain_nonlocal/format_code.c
-abinit/5.2/doc/developers/strain_nonlocal/README
-abinit/5.2/doc/developers/strain_nonlocal/make_metintstr.m
-abinit/5.2/doc/developers/HM5.document
-abinit/5.2/doc/developers/Patches-HOWTO
-abinit/5.2/doc/developers/preprocessing-options.txt
-abinit/5.2/doc/developers/rules_OMP.txt
-abinit/5.2/doc/developers/Markdown-HOWTO
-abinit/5.2/doc/developers/programmer_guide.txt
-abinit/5.2/doc/developers/contributing.html
-abinit/5.2/doc/developers/NetCDF-API
-abinit/5.2/doc/developers/MACHINES
-abinit/5.2/doc/developers/devs.txt
-abinit/5.2/doc/developers/README
-abinit/5.2/doc/developers/formabinit.css
-abinit/5.2/doc/developers/rules_coding.txt
-abinit/5.2/doc/developers/HM2.document
-abinit/5.2/doc/developers/rules_paral.txt
-abinit/5.2/doc/developers/use_cpp.txt
-abinit/5.2/doc/developers/checklist.txt
-abinit/5.2/doc/developers/format_KSS.txt
-abinit/5.2/doc/developers/FFT_in_parallel.txt
-abinit/5.2/doc/developers/dirs_and_files
-abinit/5.2/doc/developers/planning.txt
-abinit/5.2/doc/developers/contributors.txt
-abinit/5.2/doc/theory/vanderbilt-anaddb-notes.pdf
-abinit/5.2/doc/theory/1WF.pdf
-abinit/5.2/doc/theory/elasticity-oganov.pdf
-abinit/5.2/doc/theory/noncol.tex
-abinit/5.2/doc/theory/geometry.pdf
-abinit/5.2/doc/theory/Figure.png
-abinit/5.2/doc/theory/set_WFs.pdf
-abinit/5.2/doc/theory/geometry.tex
-abinit/5.2/doc/theory/1WF.tex
-abinit/5.2/doc/theory/README
-abinit/5.2/doc/theory/gwa.pdf
-abinit/5.2/doc/theory/set_WFs.tex
-abinit/5.2/doc/theory/Figure.eps
-abinit/5.2/doc/theory/noncol.pdf
-abinit/5.2/doc/presentation/presentation.pdf
-abinit/5.2/doc/presentation/reliable.tex
-abinit/5.2/doc/presentation/presentation.tex
-abinit/5.2/doc/presentation/motivation.tex
-abinit/5.2/doc/presentation/open.tex
-abinit/5.2/doc/presentation/easy.tex
-abinit/5.2/doc/presentation/coding.tex
-abinit/5.2/doc/presentation/groups.tex
-abinit/5.2/doc/presentation/features2.tex
-abinit/5.2/doc/presentation/portable.tex
-abinit/5.2/doc/presentation/overview.tex
-abinit/5.2/doc/presentation/features1.tex
-abinit/5.2/doc/users/conducti_manual.tex
-abinit/5.2/doc/users/FAQ.html
-abinit/5.2/doc/users/context.txt
-abinit/5.2/doc/users/bibliography.html
-abinit/5.2/doc/users/ddbs_upgrade.txt
-abinit/5.2/doc/users/new_user_guide.html
-abinit/5.2/doc/users/newsp_help.txt
-abinit/5.2/doc/users/tuning.txt
-abinit/5.2/doc/users/respfn_help.keep
-abinit/5.2/doc/users/piezoelectric.txt
-abinit/5.2/doc/users/spgrcopyright.html
-abinit/5.2/doc/users/band2eps_help
-abinit/5.2/doc/users/spgrdescription.html
-abinit/5.2/doc/users/aimhelp.ps
-abinit/5.2/doc/users/mrgddb_help.html
-abinit/5.2/doc/users/questionscheme.pdf
-abinit/5.2/doc/users/aimhelp.tex
-abinit/5.2/doc/users/cut3d_help.html
-abinit/5.2/doc/users/gwmanual.txt
-abinit/5.2/doc/users/aim_help.html
-abinit/5.2/doc/users/optic_help.html
-abinit/5.2/doc/users/spgrhead.html
-abinit/5.2/doc/users/elphon_manual.ps
-abinit/5.2/doc/users/positronmanual.txt
-abinit/5.2/doc/users/formabinit.css
-abinit/5.2/doc/users/netiquette.html
-abinit/5.2/doc/users/other_codes.txt
-abinit/5.2/doc/users/spacegrouphelpfile.html
-abinit/5.2/doc/users/AbinitBandStructureMaker_manual.pdf
-abinit/5.2/doc/users/spgrdefinition.html
-abinit/5.2/doc/users/respfn_help.html
-abinit/5.2/doc/users/paral_use.txt
-abinit/5.2/doc/users/problem_report.txt
-abinit/5.2/doc/users/acknowledgments.html
-abinit/5.2/doc/users/abinis_help.html
-abinit/5.2/doc/users/anaddb_help.html
-abinit/5.2/doc/config/build-examples/README
-abinit/5.2/doc/config/build-examples/i686-linux-gnu-gnu-intel7.1_antarion.ac
-abinit/5.2/doc/config/build-examples/i686-intel8.1_antarion.ac
-abinit/5.2/doc/config/build-examples/i686-intel9.0_antarion.ac
-abinit/5.2/doc/config/build-examples/powerpc-ibm_dirac.ac
-abinit/5.2/doc/config/build-examples/i686-intel9.0_dummy.ac
-abinit/5.2/doc/config/build-examples/fujitsu-fujitsu_eliza.ac
-abinit/5.2/doc/config/build-examples/powerpc64-ibm_fock.ac
-abinit/5.2/doc/config/build-examples/powerpc-ibm_max.ac
-abinit/5.2/doc/config/build-examples/i686-intel9.0_sirius.ac
-abinit/5.2/doc/config/build-examples/i686-pgi4.0_dummy.ac
-abinit/5.2/doc/config/build-examples/i686-pathscale_sleepy.ac
-abinit/5.2/doc/config/build-examples/mips-mipspro_spinoza.ac
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+%%PORTDOCS%%@dirrm %%DOCSDIR%%