science/nest: Update 2.16.0 -> 2.18.0

Reported by:	portscout

4 files changed, 163 insertions, 18 deletions

diff --git a/science/nest/Makefile b/science/nest/Makefile
index dd38524a9dc5..30ed08a23227 100644
--- a/science/nest/Makefile
+++ b/science/nest/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	nest
 DISTVERSIONPREFIX=	v
-DISTVERSION=	2.16.0
+DISTVERSION=	2.18.0
 CATEGORIES=	science biology # NEST is used in neuroscience
 
 MAINTAINER=	yuri@FreeBSD.org
diff --git a/science/nest/distinfo b/science/nest/distinfo
index 751bd9e058ee..94e3bd89a0a4 100644
--- a/science/nest/distinfo
+++ b/science/nest/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1557648420
-SHA256 (nest-nest-simulator-v2.16.0_GH0.tar.gz) = abfeb61719dec54da9477be035bef1d9d764f4e7663f63f6a6d9211f967e0490
-SIZE (nest-nest-simulator-v2.16.0_GH0.tar.gz) = 6730320
+TIMESTAMP = 1561711543
+SHA256 (nest-nest-simulator-v2.18.0_GH0.tar.gz) = 7295c936fbdd5486395b06f54f0d4d35d9a1b6ee50b7b844186ec2c92de641d1
+SIZE (nest-nest-simulator-v2.18.0_GH0.tar.gz) = 13364847
diff --git a/science/nest/files/patch-extras_nest__vars.sh.in b/science/nest/files/patch-extras_nest__vars.sh.in
deleted file mode 100644
index 93cfbaed67be..000000000000
--- a/science/nest/files/patch-extras_nest__vars.sh.in
+++ /dev/null
@@ -1,8 +0,0 @@
---- extras/nest_vars.sh.in.orig	2019-05-11 19:47:58 UTC
-+++ extras/nest_vars.sh.in
-@@ -1,4 +1,4 @@
--#!/bin/bash
-+#!/bin/sh
- 
- # NEST is installed here. When you relocate NEST, change this variable.
- export NEST_INSTALL_DIR=@CMAKE_INSTALL_PREFIX@
diff --git a/science/nest/pkg-plist b/science/nest/pkg-plist
index 101a67c60bde..b850795eaddb 100644
--- a/science/nest/pkg-plist
+++ b/science/nest/pkg-plist
@@ -12,6 +12,7 @@ include/nest/aeif_cond_beta_multisynapse.h
 include/nest/aeif_cond_exp.h
 include/nest/aeif_psc_alpha.h
 include/nest/aeif_psc_delta.h
+include/nest/aeif_psc_delta_clopath.h
 include/nest/aeif_psc_exp.h
 include/nest/aggregatedatum.h
 include/nest/allocator.h
@@ -21,10 +22,13 @@ include/nest/arraydatum.h
 include/nest/bernoulli_connection.h
 include/nest/binary_neuron.h
 include/nest/binomial_randomdev.h
+include/nest/block_vector.h
 include/nest/booldatum.h
 include/nest/callbackdatum.h
 include/nest/charcode.h
 include/nest/clipped_randomdev.h
+include/nest/clopath_archiving_node.h
+include/nest/clopath_connection.h
 include/nest/common_properties_hom_w.h
 include/nest/common_synapse_properties.h
 include/nest/completed_checker.h
@@ -95,8 +99,10 @@ include/nest/growth_curve.h
 include/nest/growth_curve_factory.h
 include/nest/gsl_binomial_randomdev.h
 include/nest/gslrandomgen.h
+include/nest/hh_cond_beta_gap_traub.h
 include/nest/hh_cond_exp_traub.h
 include/nest/hh_psc_alpha.h
+include/nest/hh_psc_alpha_clopath.h
 include/nest/hh_psc_alpha_gap.h
 include/nest/histentry.h
 include/nest/ht_connection.h
@@ -105,15 +111,16 @@ include/nest/iaf_chs_2007.h
 include/nest/iaf_chxk_2008.h
 include/nest/iaf_cond_alpha.h
 include/nest/iaf_cond_alpha_mc.h
+include/nest/iaf_cond_beta.h
 include/nest/iaf_cond_exp.h
 include/nest/iaf_cond_exp_sfa_rr.h
-include/nest/iaf_neuron.h
 include/nest/iaf_psc_alpha.h
 include/nest/iaf_psc_alpha_canon.h
 include/nest/iaf_psc_alpha_multisynapse.h
 include/nest/iaf_psc_alpha_presc.h
+include/nest/iaf_psc_alpha_ps.h
 include/nest/iaf_psc_delta.h
-include/nest/iaf_psc_delta_canon.h
+include/nest/iaf_psc_delta_ps.h
 include/nest/iaf_psc_exp.h
 include/nest/iaf_psc_exp_multisynapse.h
 include/nest/iaf_psc_exp_ps.h
@@ -277,6 +284,7 @@ include/nest/stdp_dopa_connection.h
 include/nest/stdp_pl_connection_hom.h
 include/nest/stdp_triplet_connection.h
 include/nest/step_current_generator.h
+include/nest/step_rate_generator.h
 include/nest/stimulating_device.h
 include/nest/stopwatch.h
 include/nest/string_utils.h
@@ -330,20 +338,166 @@ lib/libsli.so
 lib/libsli_readline.so
 lib/libtopology.so
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/nest/pynestkernel.so
-%%DATADIR%%/extras/EditorSupport/emacs/postscript-sli.el
-%%DATADIR%%/extras/EditorSupport/emacs/psvn.el
-%%DATADIR%%/extras/EditorSupport/emacs/sli.el
 %%DATADIR%%/extras/EditorSupport/vim/syntax/sli.vim
 %%PYTHON%%%%DATADIR%%/extras/do_tests.py
 %%DATADIR%%/extras/do_tests.sh
 %%DATADIR%%/help_generator/README.md
+%%DATADIR%%/help_generator/assets/css/ie.css
+%%DATADIR%%/help_generator/assets/css/jquery.mmenu.all.css
+%%DATADIR%%/help_generator/assets/css/jss-style.min.css
+%%DATADIR%%/help_generator/assets/css/moeppel1.png
+%%DATADIR%%/help_generator/assets/css/moeppel2.png
+%%DATADIR%%/help_generator/assets/css/nest-initiative-logo.png
+%%DATADIR%%/help_generator/assets/css/prettify.css
+%%DATADIR%%/help_generator/assets/css/style.css
+%%DATADIR%%/help_generator/assets/images/arrow.png
+%%DATADIR%%/help_generator/assets/js/code-prettify/COPYING
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-apollo.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-basic.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-clj.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-css.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-dart.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-erlang.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-go.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-hs.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-lasso.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-lisp.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-llvm.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-logtalk.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-lua.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-matlab.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-ml.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-mumps.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-n.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-pascal.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-proto.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-r.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-rd.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-rust.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-scala.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-sql.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-swift.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-tcl.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-tex.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-vb.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-vhdl.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-wiki.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-xq.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/lang-yaml.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/prettify.css
+%%DATADIR%%/help_generator/assets/js/code-prettify/prettify.js
+%%DATADIR%%/help_generator/assets/js/code-prettify/run_prettify.js
+%%DATADIR%%/help_generator/assets/js/highlight/CHANGES.md
+%%DATADIR%%/help_generator/assets/js/highlight/LICENSE
+%%DATADIR%%/help_generator/assets/js/highlight/README.md
+%%DATADIR%%/help_generator/assets/js/highlight/README.ru.md
+%%DATADIR%%/help_generator/assets/js/highlight/highlight.pack.js
+%%DATADIR%%/help_generator/assets/js/highlight/styles/agate.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/androidstudio.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/arduino-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/arta.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/ascetic.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-cave-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-cave-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-dune-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-dune-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-estuary-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-estuary-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-forest-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-forest-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-heath-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-heath-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-lakeside-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-lakeside-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-plateau-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-plateau-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-savanna-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-savanna-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-seaside-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-seaside-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-sulphurpool-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atelier-sulphurpool-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atom-one-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/atom-one-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/brown-paper.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/brown-papersq.png
+%%DATADIR%%/help_generator/assets/js/highlight/styles/codepen-embed.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/color-brewer.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/darcula.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/darkula.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/default.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/docco.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/dracula.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/far.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/foundation.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/github-gist.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/github.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/googlecode.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/grayscale.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/gruvbox-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/gruvbox-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/hopscotch.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/hybrid.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/idea.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/ir-black.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/kimbie.dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/kimbie.light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/magula.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/mono-blue.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/monokai-sublime.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/monokai.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/obsidian.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/ocean.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/paraiso-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/paraiso-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/pojoaque.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/pojoaque.jpg
+%%DATADIR%%/help_generator/assets/js/highlight/styles/purebasic.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/qtcreator_dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/qtcreator_light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/railscasts.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/rainbow.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/routeros.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/school-book.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/school-book.png
+%%DATADIR%%/help_generator/assets/js/highlight/styles/solarized-dark.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/solarized-light.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/sunburst.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/tomorrow-night-blue.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/tomorrow-night-bright.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/tomorrow-night-eighties.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/tomorrow-night.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/tomorrow.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/vs.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/vs2015.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/xcode.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/xt256.css
+%%DATADIR%%/help_generator/assets/js/highlight/styles/zenburn.css
+%%DATADIR%%/help_generator/assets/js/html5shiv.min.js
+%%DATADIR%%/help_generator/assets/js/jquery-3.1.1.min.js
+%%DATADIR%%/help_generator/assets/js/jquery-migrate-3.0.0.js
+%%DATADIR%%/help_generator/assets/js/jquery.mmenu.all.js
+%%DATADIR%%/help_generator/assets/js/jquery.sldr.js
+%%DATADIR%%/help_generator/assets/js/jss-script.min.js
+%%DATADIR%%/help_generator/conf.py
+%%DATADIR%%/help_generator/examples.sh
 %%DATADIR%%/help_generator/generate_help.py
 %%DATADIR%%/help_generator/generate_helpindex.py
 %%DATADIR%%/help_generator/helpers.py
+%%DATADIR%%/help_generator/make-slider.sh
 %%DATADIR%%/help_generator/templates/cmd.tpl.html
 %%DATADIR%%/help_generator/templates/footer.tpl.html
 %%DATADIR%%/help_generator/templates/helpindex.tpl.html
+%%DATADIR%%/help_generator/templates/nb-code.tpl.json
+%%DATADIR%%/help_generator/templates/nb-md.tpl.json
+%%DATADIR%%/help_generator/templates/nb.tpl.json
 %%DATADIR%%/help_generator/templates/nest.tpl.css
+%%DATADIR%%/help_generator/templates/overview-sample-footer.tmpl
+%%DATADIR%%/help_generator/templates/overview-sample-header.tmpl
+%%DATADIR%%/help_generator/templates/sample-footer.tmpl
+%%DATADIR%%/help_generator/templates/sample-header.tmpl
+%%DATADIR%%/help_generator/webdoc.py
 %%DATADIR%%/help_generator/writers.py
 %%DATADIR%%/sli/FormattedIO.sli
 %%DATADIR%%/sli/arraylib.sli
@@ -359,7 +513,6 @@ lib/libtopology.so
 %%DATADIR%%/sli/oosupport.sli
 %%DATADIR%%/sli/processes.sli
 %%DATADIR%%/sli/ps-lib.sli
-%%DATADIR%%/sli/rcsinfo.sli
 %%DATADIR%%/sli/regexp.sli
 %%DATADIR%%/sli/sli-init.sli
 %%DATADIR%%/sli/topology-interface.sli