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authorBaptiste Daroussin <bapt@FreeBSD.org>2013-09-20 22:48:30 +0000
committerBaptiste Daroussin <bapt@FreeBSD.org>2013-09-20 22:48:30 +0000
commit1dd0d087e7685065d68e44a26c1524785fcba7fb (patch)
tree483587f626b594c91bd63042428c5fd4c52d4891 /science
parent9ab014c6ea7a828661d8117efa2a449772d889e6 (diff)
downloadports-1dd0d087e7685065d68e44a26c1524785fcba7fb.tar.gz
ports-1dd0d087e7685065d68e44a26c1524785fcba7fb.zip
Notes
Diffstat (limited to 'science')
-rw-r--r--science/2d-rewriter/Makefile1
-rw-r--r--science/2dhf/Makefile7
-rw-r--r--science/InsightToolkit/Makefile1
-rw-r--r--science/R-cran-AMORE/Makefile1
-rw-r--r--science/R-cran-DCluster/Makefile1
-rw-r--r--science/R-cran-Epi/Makefile1
-rw-r--r--science/R-cran-bayesm/Makefile1
-rw-r--r--science/R-cran-e1071/Makefile1
-rw-r--r--science/R-cran-eco/Makefile1
-rw-r--r--science/R-cran-epicalc/Makefile1
-rw-r--r--science/R-cran-snow/Makefile1
-rw-r--r--science/R-cran-som/Makefile1
-rw-r--r--science/abinit/Makefile7
-rw-r--r--science/afni/Makefile1
-rw-r--r--science/avogadro/Makefile1
-rw-r--r--science/bddsolve/Makefile1
-rw-r--r--science/bft/Makefile7
-rw-r--r--science/bodr/Makefile6
-rw-r--r--science/brian/Makefile1
-rw-r--r--science/buddy/Makefile7
-rw-r--r--science/cdcl/Makefile1
-rw-r--r--science/cdf/Makefile7
-rw-r--r--science/cdo/Makefile1
-rw-r--r--science/cgnslib/Makefile1
-rw-r--r--science/checkmol/Makefile1
-rw-r--r--science/chemical-mime-data/Makefile1
-rw-r--r--science/chemtool-devel/Makefile1
-rw-r--r--science/chemtool/Makefile1
-rw-r--r--science/clhep/Makefile7
-rw-r--r--science/colt/Makefile1
-rw-r--r--science/crf++/Makefile7
-rw-r--r--science/dcl/Makefile1
-rw-r--r--science/devisor/Makefile1
-rw-r--r--science/dlpoly-classic/Makefile1
-rw-r--r--science/dtiquery/Makefile9
-rw-r--r--science/ecs/Makefile1
-rw-r--r--science/elmer-eio/Makefile7
-rw-r--r--science/elmer-hutiter/Makefile7
-rw-r--r--science/elmer-matc/Makefile7
-rw-r--r--science/elmer-meshgen2d/Makefile7
-rw-r--r--science/elmergrid/Makefile7
-rw-r--r--science/elmerpost/Makefile7
-rw-r--r--science/epte/Makefile7
-rw-r--r--science/euler/Makefile1
-rw-r--r--science/fastcap/Makefile1
-rw-r--r--science/fasthenry/Makefile1
-rw-r--r--science/felt/Makefile1
-rw-r--r--science/flounder/Makefile1
-rw-r--r--science/fvcom-mpi/Makefile1
-rw-r--r--science/fvcom/Makefile1
-rw-r--r--science/fvm/Makefile1
-rw-r--r--science/g3data/Makefile1
-rw-r--r--science/gamess/Makefile7
-rw-r--r--science/gchemutils/Makefile1
-rw-r--r--science/gdis/Makefile2
-rw-r--r--science/getdp/Makefile1
-rw-r--r--science/ghemical/Makefile1
-rw-r--r--science/ghmm/Makefile7
-rw-r--r--science/gnudatalanguage/Makefile1
-rw-r--r--science/gramps/Makefile1
-rw-r--r--science/gromacs/Makefile1
-rw-r--r--science/gsmc/Makefile1
-rw-r--r--science/gtamsanalyzer/Makefile1
-rw-r--r--science/gwyddion/Makefile1
-rw-r--r--science/h5utils/Makefile5
-rw-r--r--science/harminv/Makefile7
-rw-r--r--science/hdf-java/Makefile1
-rw-r--r--science/hdf/Makefile1
-rw-r--r--science/hdf5-18/Makefile1
-rw-r--r--science/hdf5/Makefile1
-rw-r--r--science/hs-bio/Makefile1
-rw-r--r--science/isaac-cfd/Makefile1
-rw-r--r--science/jmol/Makefile1
-rw-r--r--science/jstrack/Makefile7
-rw-r--r--science/kalzium/Makefile1
-rw-r--r--science/kst2/Makefile1
-rw-r--r--science/lamprop/Makefile7
-rw-r--r--science/libctl/Makefile1
-rw-r--r--science/libghemical/Makefile1
-rw-r--r--science/libint/Makefile1
-rw-r--r--science/libkml/Makefile7
-rw-r--r--science/liblinear/Makefile1
-rw-r--r--science/liboglappth/Makefile6
-rw-r--r--science/libquantum/Makefile7
-rw-r--r--science/libsvm-python/Makefile7
-rw-r--r--science/libsvm/Makefile1
-rw-r--r--science/linsmith/Makefile1
-rw-r--r--science/massxpert/Makefile1
-rw-r--r--science/mayavi/Makefile1
-rw-r--r--science/mbdyn/Makefile1
-rw-r--r--science/mcstas/Makefile1
-rw-r--r--science/medit/Makefile1
-rw-r--r--science/meep/Makefile1
-rw-r--r--science/mei/Makefile7
-rw-r--r--science/minc/Makefile8
-rw-r--r--science/minc2/Makefile1
-rw-r--r--science/mol2ps/Makefile1
-rw-r--r--science/mpb/Makefile1
-rw-r--r--science/mpqc-mpich/Makefile7
-rw-r--r--science/mpqc/Makefile7
-rw-r--r--science/ncs/Makefile7
-rw-r--r--science/netcdf-ftn/Makefile1
-rw-r--r--science/netcdf/Makefile1
-rw-r--r--science/netcdf3-ftn/Makefile1
-rw-r--r--science/netcdf4/Makefile1
-rw-r--r--science/nifticlib/Makefile1
-rw-r--r--science/omnetpp/Makefile1
-rw-r--r--science/openbabel/Makefile1
-rw-r--r--science/ovt/Makefile1
-rw-r--r--science/p5-Algorithm-SVMLight/Makefile1
-rw-r--r--science/p5-Chemistry-3DBuilder/Makefile1
-rw-r--r--science/p5-Chemistry-Bond-Find/Makefile1
-rw-r--r--science/p5-Chemistry-Canonicalize/Makefile1
-rw-r--r--science/p5-Chemistry-Elements/Makefile1
-rw-r--r--science/p5-Chemistry-File-MDLMol/Makefile1
-rw-r--r--science/p5-Chemistry-File-Mopac/Makefile1
-rw-r--r--science/p5-Chemistry-File-PDB/Makefile1
-rw-r--r--science/p5-Chemistry-File-SLN/Makefile1
-rw-r--r--science/p5-Chemistry-File-SMARTS/Makefile1
-rw-r--r--science/p5-Chemistry-File-SMILES/Makefile1
-rw-r--r--science/p5-Chemistry-File-VRML/Makefile1
-rw-r--r--science/p5-Chemistry-File-XYZ/Makefile1
-rw-r--r--science/p5-Chemistry-FormulaPattern/Makefile1
-rw-r--r--science/p5-Chemistry-InternalCoords/Makefile1
-rw-r--r--science/p5-Chemistry-Isotope/Makefile1
-rw-r--r--science/p5-Chemistry-MacroMol/Makefile1
-rw-r--r--science/p5-Chemistry-MidasPattern/Makefile1
-rw-r--r--science/p5-Chemistry-Mok/Makefile1
-rw-r--r--science/p5-Chemistry-Mol/Makefile1
-rw-r--r--science/p5-Chemistry-Pattern/Makefile1
-rw-r--r--science/p5-Chemistry-Reaction/Makefile1
-rw-r--r--science/p5-Chemistry-Ring/Makefile1
-rw-r--r--science/p5-Geo-BUFR/Makefile1
-rw-r--r--science/p5-Geo-Coordinates-Converter-iArea/Makefile1
-rw-r--r--science/p5-Geo-Coordinates-Converter/Makefile1
-rw-r--r--science/p5-Geo-ReadGRIB/Makefile1
-rw-r--r--science/p5-Geo-WebService-Elevation-USGS/Makefile1
-rw-r--r--science/p5-PerlMol/Makefile1
-rw-r--r--science/p5-Physics-Unit/Makefile1
-rw-r--r--science/paje/Makefile1
-rw-r--r--science/paraview/Makefile3
-rw-r--r--science/peekabot/Makefile1
-rw-r--r--science/pnetcdf/Makefile1
-rw-r--r--science/psi3/Makefile7
-rw-r--r--science/psychopy/Makefile1
-rw-r--r--science/py-DendroPy/Makefile7
-rw-r--r--science/py-coards/Makefile1
-rw-r--r--science/py-h5py/Makefile1
-rw-r--r--science/py-hcluster/Makefile7
-rw-r--r--science/py-mdp/Makefile7
-rw-r--r--science/py-mlpy/Makefile7
-rw-r--r--science/py-netCDF4/Makefile1
-rw-r--r--science/py-obspy/Makefile1
-rw-r--r--science/py-paida/Makefile1
-rw-r--r--science/py-pupynere/Makefile1
-rw-r--r--science/py-pydicom/Makefile7
-rw-r--r--science/py-scikit-learn/Makefile4
-rw-r--r--science/py-scimath/Makefile1
-rw-r--r--science/py-scipy/Makefile1
-rw-r--r--science/py-ws2300/Makefile1
-rw-r--r--science/pybrain/Makefile7
-rw-r--r--science/pycdf/Makefile7
-rw-r--r--science/pynn/Makefile1
-rw-r--r--science/pyteomics.biolccc/Makefile1
-rw-r--r--science/pyteomics/Makefile1
-rw-r--r--science/qcl/Makefile1
-rw-r--r--science/qtresistors/Makefile7
-rw-r--r--science/ruby-dcl/Makefile7
-rw-r--r--science/ruby-gphys/Makefile3
-rw-r--r--science/ruby-netcdf/Makefile7
-rw-r--r--science/rubygem-ai4r/Makefile1
-rw-r--r--science/silo/Makefile1
-rw-r--r--science/simlib/Makefile7
-rw-r--r--science/step/Makefile1
-rw-r--r--science/svmlight/Makefile7
-rw-r--r--science/szip/Makefile1
-rw-r--r--science/udunits/Makefile1
-rw-r--r--science/v_sim/Makefile1
-rw-r--r--science/veusz/Makefile1
-rw-r--r--science/vmd/Makefile1
-rw-r--r--science/voro++/Makefile1
-rw-r--r--science/x11iraf/Makefile6
-rw-r--r--science/xfce4-equake-plugin/Makefile2
-rw-r--r--science/xmakemol/Makefile1
-rw-r--r--science/xmds/Makefile1
185 files changed, 233 insertions, 229 deletions
diff --git a/science/2d-rewriter/Makefile b/science/2d-rewriter/Makefile
index 787e291678eb..2d01330c85b6 100644
--- a/science/2d-rewriter/Makefile
+++ b/science/2d-rewriter/Makefile
@@ -14,6 +14,7 @@ MANCOMPRESSED= yes
USES= imake
USE_XORG= x11 xext
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MEXAMPLES}
diff --git a/science/2dhf/Makefile b/science/2dhf/Makefile
index c3b5f5626617..f792060966c0 100644
--- a/science/2dhf/Makefile
+++ b/science/2dhf/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: 2dhf
-# Date created: 24 July 2003
-# Whom: NAKATA, Maho <maho@FreeBSD.org>
-#
+# Created by: NAKATA, Maho <maho@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= 2dhf
PORTVERSION= 2005.05
@@ -57,6 +53,7 @@ WRKSRC= ${WRKDIR}/${PORTNAME}
USE_GMAKE= yes
ALL_TARGET= all
+NO_STAGE= yes
pre-everything::
@${ECHO_CMD} "You can optimize by setting WITH_OPTIMIZED_FLAGS=yes."
diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile
index 2809c6e265bf..2326f9e7e793 100644
--- a/science/InsightToolkit/Makefile
+++ b/science/InsightToolkit/Makefile
@@ -22,6 +22,7 @@ CMAKE_ARGS+= -DBUILD_SHARED_LIBS:BOOL=ON
SUB_FILES= pkg-message
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ! ${PORT_OPTIONS:MEXAMPLES}
diff --git a/science/R-cran-AMORE/Makefile b/science/R-cran-AMORE/Makefile
index 10b3a96ff70b..4e37e7fd5e00 100644
--- a/science/R-cran-AMORE/Makefile
+++ b/science/R-cran-AMORE/Makefile
@@ -13,4 +13,5 @@ COMMENT= A MORE flexible neural network package
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/R-cran-DCluster/Makefile b/science/R-cran-DCluster/Makefile
index 15b9c98d4d73..22bf9e48df57 100644
--- a/science/R-cran-DCluster/Makefile
+++ b/science/R-cran-DCluster/Makefile
@@ -18,4 +18,5 @@ RUN_DEPENDS= R-cran-spdep>0:${PORTSDIR}/math/R-cran-spdep
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/R-cran-Epi/Makefile b/science/R-cran-Epi/Makefile
index f5ea6a36a0b1..1bd942853523 100644
--- a/science/R-cran-Epi/Makefile
+++ b/science/R-cran-Epi/Makefile
@@ -15,4 +15,5 @@ LICENSE= GPLv2
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/R-cran-bayesm/Makefile b/science/R-cran-bayesm/Makefile
index 26164cdb0b45..d713e75c99af 100644
--- a/science/R-cran-bayesm/Makefile
+++ b/science/R-cran-bayesm/Makefile
@@ -13,4 +13,5 @@ COMMENT= Bayesian Inference for Marketing/Micro-econometrics
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/R-cran-e1071/Makefile b/science/R-cran-e1071/Makefile
index dc7efef819e9..bcbb809b2a9f 100644
--- a/science/R-cran-e1071/Makefile
+++ b/science/R-cran-e1071/Makefile
@@ -15,4 +15,5 @@ LICENSE= GPLv2
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/R-cran-eco/Makefile b/science/R-cran-eco/Makefile
index d974f1f0105e..9abbff41ffb8 100644
--- a/science/R-cran-eco/Makefile
+++ b/science/R-cran-eco/Makefile
@@ -13,4 +13,5 @@ COMMENT= R Package for Ecological Inference in 2x2 Tables
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/R-cran-epicalc/Makefile b/science/R-cran-epicalc/Makefile
index 5ef562f5eafe..e459975c34f5 100644
--- a/science/R-cran-epicalc/Makefile
+++ b/science/R-cran-epicalc/Makefile
@@ -13,4 +13,5 @@ COMMENT= Epidemiological calculator
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/R-cran-snow/Makefile b/science/R-cran-snow/Makefile
index 618c0e1d20b8..d1a0e4c2dfbe 100644
--- a/science/R-cran-snow/Makefile
+++ b/science/R-cran-snow/Makefile
@@ -13,4 +13,5 @@ COMMENT= Support for simple parallel computing in R
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/R-cran-som/Makefile b/science/R-cran-som/Makefile
index 27e69662881b..21eaa0edcc62 100644
--- a/science/R-cran-som/Makefile
+++ b/science/R-cran-som/Makefile
@@ -15,4 +15,5 @@ LICENSE= GPLv3
USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/abinit/Makefile b/science/abinit/Makefile
index 1eb365ecfa7f..7164eaddde71 100644
--- a/science/abinit/Makefile
+++ b/science/abinit/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: abinit
-# Date Created: 18 March 2004
-# Whom: NAKATA Maho <maho@FreeBSD.org>
-#
+# Created by: NAKATA Maho <maho@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= abinit
PORTVERSION= 5.7.3
@@ -38,6 +34,7 @@ BUILD_DEPENDS+= gm4:${PORTSDIR}/devel/m4 \
USE_GHOSTSCRIPT_BUILD= yes
.endif
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "ia64" || ${ARCH} == "powerpc" || ${ARCH} == "sparc64"
diff --git a/science/afni/Makefile b/science/afni/Makefile
index c4fa87eabc1e..62ab2a1c1585 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -33,6 +33,7 @@ RUN_DEPENDS= cjpeg:${PORTSDIR}/graphics/jpeg \
USES= gettext iconv gmake motif
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "sparc64"
diff --git a/science/avogadro/Makefile b/science/avogadro/Makefile
index 10e6d0e54aaf..f59a1455da0f 100644
--- a/science/avogadro/Makefile
+++ b/science/avogadro/Makefile
@@ -31,6 +31,7 @@ LDFLAGS+= -L${LOCALBASE}/lib
MAN1= avogadro.1 avopkg.1
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MPYTHON}
diff --git a/science/bddsolve/Makefile b/science/bddsolve/Makefile
index 1f28fde9a98f..f011c4f65661 100644
--- a/science/bddsolve/Makefile
+++ b/science/bddsolve/Makefile
@@ -16,6 +16,7 @@ LIB_DEPENDS+= bdd:${PORTSDIR}/science/buddy \
USE_ZIP= yes
NO_WRKSUBDIR= yes
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "powerpc"
diff --git a/science/bft/Makefile b/science/bft/Makefile
index a1c0d61e8d6b..51b43c9fa2cc 100644
--- a/science/bft/Makefile
+++ b/science/bft/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: bft
-# Date created: Sun 1 apr 2007
-# Whom: thierry@pompo.net
-#
+# Created by: thierry@pompo.net
# $FreeBSD$
-#
PORTNAME= bft
PORTVERSION= 1.1.5
@@ -26,6 +22,7 @@ MAN1= bft-config.1
TESTSBIN= bft_test bft_mem_usage_test bft_printf_test
+NO_STAGE= yes
pre-configure:
# No useful doc there
${REINPLACE_CMD} -e 's|tests doc|tests|' ${WRKSRC}/Makefile.in
diff --git a/science/bodr/Makefile b/science/bodr/Makefile
index 76803726ee25..a5c3e0b1d6bd 100644
--- a/science/bodr/Makefile
+++ b/science/bodr/Makefile
@@ -1,7 +1,4 @@
-# New ports collection makefile for: bodr
-# Date created: 21 May 2007
-# Whom: Pav Lucistnik <pav@FreeBSD.org>
-#
+# Created by: Pav Lucistnik <pav@FreeBSD.org>
# $FreeBSD$
PORTNAME= bodr
@@ -20,6 +17,7 @@ USE_GMAKE= yes
USE_PERL5= build
GNU_CONFIGURE= yes
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e 's|{datadir}/pkgconfig|{prefix}/libdata/pkgconfig|' ${WRKSRC}/Makefile.in
diff --git a/science/brian/Makefile b/science/brian/Makefile
index 91f44e8e4c50..63246b2fde8a 100644
--- a/science/brian/Makefile
+++ b/science/brian/Makefile
@@ -19,4 +19,5 @@ USE_ZIP= yes
USE_PYTHON= 2.5+
USE_PYDISTUTILS= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/buddy/Makefile b/science/buddy/Makefile
index 14614b9172e5..a4571652e17a 100644
--- a/science/buddy/Makefile
+++ b/science/buddy/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: buddy
-# Date created: 31 August 2004
-# Whom: Leland Wang <llwang@infor.org>
-#
+# Created by: Leland Wang <llwang@infor.org>
# $FreeBSD$
-#
PORTNAME= buddy
PORTVERSION= 2.4
@@ -21,6 +17,7 @@ USE_LDCONFIG= yes
DOCS= doc/bddnotes.ps doc/buddy.ps doc/tech.txt README AUTHORS
+NO_STAGE= yes
post-install:
.if !defined(NOPORTDOCS)
${MKDIR} ${DOCSDIR}
diff --git a/science/cdcl/Makefile b/science/cdcl/Makefile
index e33f30eec51c..a7bcdf1a8838 100644
--- a/science/cdcl/Makefile
+++ b/science/cdcl/Makefile
@@ -23,6 +23,7 @@ PLIST_SUB= DCL_VERSION=${PORTVERSION:S/.//g}
MAKE_JOBS_UNSAFE= yes
+NO_STAGE= yes
.include <bsd.port.pre.mk>
BINARIES= cdclcmap cdclclr cdcldate cdcldbs cdclexec cdclfont \
diff --git a/science/cdf/Makefile b/science/cdf/Makefile
index 88f60cbf8f7f..3846cddb4a8c 100644
--- a/science/cdf/Makefile
+++ b/science/cdf/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: cdf
-# Date created: 26 January 2006
-# Whom: Thierry Thomas <thierry@pompo.net>
-#
+# Created by: Thierry Thomas <thierry@pompo.net>
# $FreeBSD$
-#
PORTNAME= cdf3
PORTVERSION= 3.3.0
@@ -33,6 +29,7 @@ PKGMESSAGE= ${WRKDIR}/pkg-message
DEFS= B C K
PORTDOCS= CDF_copyright.txt CHANGES.txt Release.notes Welcome.txt
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "ia64" || ${ARCH} == "powerpc" || ${ARCH} == "sparc64"
diff --git a/science/cdo/Makefile b/science/cdo/Makefile
index 9efc846d703f..7f30593f1faa 100644
--- a/science/cdo/Makefile
+++ b/science/cdo/Makefile
@@ -23,6 +23,7 @@ USES= gmake pathfix
HDF5_VER?= 18
NETCDF_VER?= 4
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MNETCDF} && ${PORT_OPTIONS:MHDF5} && ${NETCDF_VER} == 4 && ${HDF5_VER} == 16
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index d9ed155b4657..9c6535bd294e 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -28,6 +28,7 @@ SZIP_DESC= SZIP support in HDF5
OPTIONS_DEFAULT=HDF5 TESTS TOOLS
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MHDF5}
diff --git a/science/checkmol/Makefile b/science/checkmol/Makefile
index 947e97d81dfb..1f58a65f7f27 100644
--- a/science/checkmol/Makefile
+++ b/science/checkmol/Makefile
@@ -22,6 +22,7 @@ USE_FPC= yes
PLIST_FILES= bin/checkmol bin/matchmol
+NO_STAGE= yes
do-build:
(cd ${WRKSRC} && ${LOCALBASE}/bin/fpc ${EXTRACT_ONLY} -S2 -O3)
diff --git a/science/chemical-mime-data/Makefile b/science/chemical-mime-data/Makefile
index 55f38660bb3d..44ddf66fecbc 100644
--- a/science/chemical-mime-data/Makefile
+++ b/science/chemical-mime-data/Makefile
@@ -23,6 +23,7 @@ CPPFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib -lintl
INSTALLS_ICONS= yes
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e 's|*-*-solaris*|*| ; s|rsvg|rsvg-convert|g' ${WRKSRC}/configure
@${REINPLACE_CMD} -e 's|(datadir)/pkgconfig|(prefix)/libdata/pkgconfig|' ${WRKSRC}/Makefile.in
diff --git a/science/chemtool-devel/Makefile b/science/chemtool-devel/Makefile
index 76a5b6eb01a7..2e7dc3862f81 100644
--- a/science/chemtool-devel/Makefile
+++ b/science/chemtool-devel/Makefile
@@ -29,6 +29,7 @@ MAKE_JOBS_UNSAFE= yes
CFLAGS+= -I${LOCALBASE}/include/libEMF
CXXFLAGS+= -I${LOCALBASE}/include/libEMF
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e 's+%%LOCALBASE%%+${LOCALBASE}+g;' ${WRKSRC}/configure.in
@${REINPLACE_CMD} -e 's+%%LOCALBASE%%+${LOCALBASE}+g;' ${WRKSRC}/configure
diff --git a/science/chemtool/Makefile b/science/chemtool/Makefile
index d1680ac5cc07..29d03bc1bd32 100644
--- a/science/chemtool/Makefile
+++ b/science/chemtool/Makefile
@@ -19,6 +19,7 @@ CFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
CONFIGURE_ARGS= --enable-emf=yes --with-localedir=${PREFIX}
+NO_STAGE= yes
.include <bsd.port.pre.mk>
#isolate libEMF stuff
diff --git a/science/clhep/Makefile b/science/clhep/Makefile
index 9906978ef187..018c9876f7c7 100644
--- a/science/clhep/Makefile
+++ b/science/clhep/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: clhep
-# Date created: 6 May 2001
-# Whom: will
-#
+# Created by: will
# $FreeBSD$
-#
PORTNAME= clhep
PORTVERSION= 2.1.0.1
@@ -24,6 +20,7 @@ USE_LDCONFIG= yes
PLIST_SUB= VERSION="${PORTVERSION}"
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${OSVERSION} < 700000
diff --git a/science/colt/Makefile b/science/colt/Makefile
index a38f33d4f642..412c2e30828f 100644
--- a/science/colt/Makefile
+++ b/science/colt/Makefile
@@ -30,6 +30,7 @@ PORTDOCS= *
PLIST_FILES= %%JAVAJARDIR%%/colt.jar
+NO_STAGE= yes
.include <bsd.port.pre.mk>
pre-fetch:
diff --git a/science/crf++/Makefile b/science/crf++/Makefile
index 89e7686ad246..c4f215313290 100644
--- a/science/crf++/Makefile
+++ b/science/crf++/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: crf++
-# Date created: 2006-07-27
-# Whom: Cheng-Lung Sung <clsung@FreeBSD.org>
-#
+# Created by: Cheng-Lung Sung <clsung@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= crf++
PORTVERSION= 0.54
@@ -19,4 +15,5 @@ GNU_CONFIGURE= yes
USE_LDCONFIG= yes
USE_AUTOTOOLS= libtool
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/dcl/Makefile b/science/dcl/Makefile
index ed810861c0a7..514128204b30 100644
--- a/science/dcl/Makefile
+++ b/science/dcl/Makefile
@@ -24,6 +24,7 @@ PORTEXAMPLES= *
RESTRICTED= No commercial use
+NO_STAGE= yes
post-install:
.if !defined(NOPORTEXAMPLES)
@${MKDIR} ${EXAMPLESDIR}
diff --git a/science/devisor/Makefile b/science/devisor/Makefile
index 8a73944e1aae..57a0f94c3c29 100644
--- a/science/devisor/Makefile
+++ b/science/devisor/Makefile
@@ -27,6 +27,7 @@ PLIST_FILES= bin/devisorgrid
OPTIONS_DEFINE= DOCS
+NO_STAGE= yes
.include <bsd.port.options.mk>
do-install:
diff --git a/science/dlpoly-classic/Makefile b/science/dlpoly-classic/Makefile
index 6085be753296..c82ff61ca745 100644
--- a/science/dlpoly-classic/Makefile
+++ b/science/dlpoly-classic/Makefile
@@ -27,6 +27,7 @@ BUILD_WRKSRC= ${WRKSRC}/source
MPIF90= ${LOCALBASE}/mpi/openmpi/bin/mpif90
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MGUI}
diff --git a/science/dtiquery/Makefile b/science/dtiquery/Makefile
index c845fea5d7d9..31988da4a103 100644
--- a/science/dtiquery/Makefile
+++ b/science/dtiquery/Makefile
@@ -1,11 +1,5 @@
-############################################################################
-# New ports collection Makefile for: DTI-Query
-# Date created: 10 July 2006
-# Whom: Jason W. Bacon <jwbacon@tds.net>
-#
+# Created by: Jason W. Bacon <jwbacon@tds.net>
# $FreeBSD$
-#
-############################################################################
PORTNAME= dtiquery
PORTVERSION= 1.1
@@ -42,6 +36,7 @@ MAN1= dtiquery.1 \
dtiprecompute_cmd.1 \
dtiprecompute_gui.1
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if !exists(${DISTDIR}/${DISTNAME}.tar.gz)
diff --git a/science/ecs/Makefile b/science/ecs/Makefile
index 7a64b8311ffd..47b3540e2f60 100644
--- a/science/ecs/Makefile
+++ b/science/ecs/Makefile
@@ -40,6 +40,7 @@ CONFIGURE_ARGS+=--with-adf=${LOCALBASE} \
CONFIGURE_ARGS+=--without-adf --without-ccm
.endif
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MNLS}
diff --git a/science/elmer-eio/Makefile b/science/elmer-eio/Makefile
index a6640f209c9b..dea16e200003 100644
--- a/science/elmer-eio/Makefile
+++ b/science/elmer-eio/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: elmer-eio
-# Date created: 5 Jan 2006
-# Whom: Pedro Giffuni <giffunip@asme.org>
-#
+# Created by: Pedro Giffuni <giffunip@asme.org>
# $FreeBSD$
-#
PORTNAME= eio
PORTVERSION= 5.4.0
@@ -22,6 +18,7 @@ ALL_TARGET=
PLIST_FILES= include/eio_api.h lib/libeioc.a lib/libeiof.a
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "amd64" || ${ARCH} == "ia64"
diff --git a/science/elmer-hutiter/Makefile b/science/elmer-hutiter/Makefile
index f3daf4e4651e..6ca989013e06 100644
--- a/science/elmer-hutiter/Makefile
+++ b/science/elmer-hutiter/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: hutiter
-# Date created: 5 Jan 2006
-# Whom: Pedro Giffuni <giffunip@asme.org>
-#
+# Created by: Pedro Giffuni <giffunip@asme.org>
# $FreeBSD$
-#
PORTNAME= hutiter
PORTVERSION= 5.4.0
@@ -20,6 +16,7 @@ LIB_DEPENDS= arpack.1:${PORTSDIR}/math/arpack
USE_FORTRAN= yes
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if exists(${LOCALBASE}/lib/libatlas.so) && !defined(WITH_BLAS)
diff --git a/science/elmer-matc/Makefile b/science/elmer-matc/Makefile
index 8b1d3a41fda5..25b8ee5fcd66 100644
--- a/science/elmer-matc/Makefile
+++ b/science/elmer-matc/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: Elmer-MatC
-# Date created: 5 Jan 2006
-# Whom: Pedro Giffuni <giffunip@asme.org>
-#
+# Created by: Pedro Giffuni <giffunip@asme.org>
# $FreeBSD$
-#
PORTNAME= matc
PORTVERSION= 5.4.0
@@ -22,6 +18,7 @@ USE_FORTRAN= g77
PLIST_SUB= ARCH=${MACHINE_ARCH}
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "amd64" || ${ARCH} == "ia64"
diff --git a/science/elmer-meshgen2d/Makefile b/science/elmer-meshgen2d/Makefile
index 5489bb875287..94c6355f7704 100644
--- a/science/elmer-meshgen2d/Makefile
+++ b/science/elmer-meshgen2d/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: elmer-meshgen2d
-# Date created: 5 Jan 2006
-# Whom: Pedro Giffuni <giffunip@asme.org>
-#
+# Created by: Pedro Giffuni <giffunip@asme.org>
# $FreeBSD$
-#
PORTNAME= meshgen2d
PORTVERSION= 5.0.0
@@ -21,4 +17,5 @@ ALL_TARGET=
PLIST_FILES= bin/ElmerMesh2D \
bin/Mesh2D
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/elmergrid/Makefile b/science/elmergrid/Makefile
index da0ecba87b02..e59fea0aa39d 100644
--- a/science/elmergrid/Makefile
+++ b/science/elmergrid/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: ElmerGrid
-# Date created: 5 Jan 2006
-# Whom: Pedro Giffuni <giffunip@asme.org>
-#
+# Created by: Pedro Giffuni <giffunip@asme.org>
# $FreeBSD$
-#
PORTNAME= elmergrid
PORTVERSION= 5.4.0
@@ -19,4 +15,5 @@ GNU_CONFIGURE= yes
PLIST_FILES= bin/ElmerGrid
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/elmerpost/Makefile b/science/elmerpost/Makefile
index 89f05c761bd1..cead16408027 100644
--- a/science/elmerpost/Makefile
+++ b/science/elmerpost/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: elmerpost
-# Date created: 5 Jan 2006
-# Whom: Pedro Giffuni <giffunip@asme.org>
-#
+# Created by: Pedro Giffuni <giffunip@asme.org>
# $FreeBSD$
-#
PORTNAME= elmerpost
PORTVERSION= 5.4.0
@@ -28,6 +24,7 @@ GNU_CONFIGURE= yes
USE_GMAKE= yes
USE_FORTRAN= g77
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "amd64"
diff --git a/science/epte/Makefile b/science/epte/Makefile
index 5bc3952b1793..ef9ee3c471d5 100644
--- a/science/epte/Makefile
+++ b/science/epte/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: epte
-# Date created: 2010-09-01
-# Whom: Frederic Culot <frederic@culot.org>
-#
+# Created by: Frederic Culot <frederic@culot.org>
# $FreeBSD$
-#
PORTNAME= epte
PORTVERSION= 2.0.8
@@ -21,6 +17,7 @@ WRKSRC= ${WRKDIR}/${PORTNAME}
PLIST_FILES= bin/epte
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} 's|/usr|${PREFIX}|' ${WRKSRC}/epte.1
diff --git a/science/euler/Makefile b/science/euler/Makefile
index 2f72f73652e1..b99eedf8af92 100644
--- a/science/euler/Makefile
+++ b/science/euler/Makefile
@@ -17,6 +17,7 @@ USES= pkgconfig
USE_GNOME= gtk20
GNU_CONFIGURE= yes
+NO_STAGE= yes
.include <bsd.port.pre.mk>
post-patch:
diff --git a/science/fastcap/Makefile b/science/fastcap/Makefile
index f94f6612dffb..1826c11fea11 100644
--- a/science/fastcap/Makefile
+++ b/science/fastcap/Makefile
@@ -17,6 +17,7 @@ BINFILES= busgen capgen cubegen fastcap pipedgen pyragen
OPTIONS_DEFINE= DOCS EXAMPLES
+NO_STAGE= yes
.include <bsd.port.options.mk>
post-patch:
diff --git a/science/fasthenry/Makefile b/science/fasthenry/Makefile
index 7ce7853a2a42..88198f9a4a78 100644
--- a/science/fasthenry/Makefile
+++ b/science/fasthenry/Makefile
@@ -13,6 +13,7 @@ HAS_CONFIGURE= yes
CONFIGURE_SCRIPT= config
WRKSRC = ${WRKDIR}/fasthenry-3.0wr
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -Ee '/CFLAGS =/{s/=/+=/;s/-O[[:digit:]]*//;}' \
${WRKSRC}/src/fasthenry/Makefile.default \
diff --git a/science/felt/Makefile b/science/felt/Makefile
index 3ddf847be0a9..c61df788e955 100644
--- a/science/felt/Makefile
+++ b/science/felt/Makefile
@@ -32,6 +32,7 @@ MAN4= corduroy.4 felt.4
DOCSDIR= ${PREFIX}/share/doc/FElt
EXAMPLESDIR= ${PREFIX}/share/examples/FElt
+NO_STAGE= yes
post-patch:
@${FIND} ${WRKSRC} -name "*.[ch]" | ${XARGS} ${REINPLACE_CMD} -e \
's|["<]malloc\.h[">]|<stdlib.h>|g'
diff --git a/science/flounder/Makefile b/science/flounder/Makefile
index f1c916735cb0..63c389cf7d52 100644
--- a/science/flounder/Makefile
+++ b/science/flounder/Makefile
@@ -28,6 +28,7 @@ LDFLAGS+= -L${LOCALBASE}/lib ${PTHREAD_LIBS}
PLIST_FILES= bin/flounder bin/igbhead
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MGNUPLOT}
diff --git a/science/fvcom-mpi/Makefile b/science/fvcom-mpi/Makefile
index 15a711d3596f..ec384ff66b7d 100644
--- a/science/fvcom-mpi/Makefile
+++ b/science/fvcom-mpi/Makefile
@@ -12,4 +12,5 @@ MASTERDIR= ${.CURDIR}/../fvcom
MAKE_ARGS+= FC=${LOCALBASE}/mpi/openmpi/bin/mpif90 \
PORT_CPP_FLAGS+=-DMULTIPROCESSOR
+NO_STAGE= yes
.include "${MASTERDIR}/Makefile"
diff --git a/science/fvcom/Makefile b/science/fvcom/Makefile
index e22276a39fc8..a716f9c1f74f 100644
--- a/science/fvcom/Makefile
+++ b/science/fvcom/Makefile
@@ -23,6 +23,7 @@ PLIST_FILES= bin/${PORTNAME}${PKGNAMESUFFIX}
RESTRICTED= may not be redistributed because of licensing reasons
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if !exists(${DISTDIR}/${DIST_SUBDIR}/${DISTFILES})
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index 7611e838f947..df5ada9784f6 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -51,6 +51,7 @@ MAN1= fvm-config.1
TESTSBIN= fvm_file_test fvm_interface_test fvm_selector_postfix_test fvm_selector_test
+NO_STAGE= yes
pre-configure:
${REINPLACE_CMD} -e 's|-lmpich|-lmpich -lmpl|' \
${WRKSRC}/${CONFIGURE_SCRIPT}
diff --git a/science/g3data/Makefile b/science/g3data/Makefile
index 6a41401132b1..e2ad4d19985b 100644
--- a/science/g3data/Makefile
+++ b/science/g3data/Makefile
@@ -23,6 +23,7 @@ PLIST_FILES= bin/g3data %%EXAMPLESDIR%%/test1.png %%EXAMPLESDIR%%/test1.values \
%%EXAMPLESDIR%%/test2.png %%EXAMPLESDIR%%/test2.values
PLIST_DIRS= %%EXAMPLESDIR%%
+NO_STAGE= yes
post-install:
@${MKDIR} ${EXAMPLESDIR}
${INSTALL_DATA} ${WRKSRC}/test1.png ${EXAMPLESDIR}
diff --git a/science/gamess/Makefile b/science/gamess/Makefile
index 40ad23c61a48..569ed3bee2d5 100644
--- a/science/gamess/Makefile
+++ b/science/gamess/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: gamess
-# Date created: 2007-3-13
-# Whom: NAKATA Maho <maho@FreeBSD.org>
-#
+# Created by: NAKATA Maho <maho@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= gamess
PORTVERSION= ${SNAPDATE}
@@ -29,6 +25,7 @@ IGNORE=you must manually get the source distribution from master site. http://ww
MANUAL_PACKAGE_BUILD=You must manually get the source distribution from master site. http://www.msg.ameslab.gov/GAMESS/download.html. Please select "Source code distribution", and check on "running on Intel compatible PC running Linux". You must have license, and freely obtainable.
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if exists(${LOCALBASE}/lib/libgoto2.so)
diff --git a/science/gchemutils/Makefile b/science/gchemutils/Makefile
index 0db18b7ccb81..08db3af6c095 100644
--- a/science/gchemutils/Makefile
+++ b/science/gchemutils/Makefile
@@ -45,6 +45,7 @@ PLIST_SUB= VER=0.14 GOFFICE=0.10
OPTIONS_DEFINE= XUL
XUL_DESC= Build browser plugin (requires libxul)
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MXUL}
diff --git a/science/gdis/Makefile b/science/gdis/Makefile
index 7c1715bba3d1..19e86b2ec517 100644
--- a/science/gdis/Makefile
+++ b/science/gdis/Makefile
@@ -1,4 +1,3 @@
-# Created y: ijliao
# $FreeBSD$
PORTNAME= gdis
@@ -29,6 +28,7 @@ PLIST_DIRS= %%DATADIR%%
DESKTOP_ENTRIES="GDIS" "Molecular modelling GUI" \
"${PREFIX}/share/pixmaps/gdis.xpm" "${PORTNAME}" "" true
+NO_STAGE= yes
.include <bsd.port.options.mk>
post-patch:
diff --git a/science/getdp/Makefile b/science/getdp/Makefile
index 19fdaba1a79d..1beef2387ac9 100644
--- a/science/getdp/Makefile
+++ b/science/getdp/Makefile
@@ -30,6 +30,7 @@ WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}
MAN1= getdp.1
+NO_STAGE= yes
post-install:
.if !defined(NOPORTDOCS)
cd ${WRKSRC}/doc && ${FIND} -s ${WRKSRC}/doc/* | ${SED} -e 's#${WRKSRC}/doc/##' | ${CPIO} -pmud -R ${BINOWN}:${BINGRP} ${DOCSDIR}
diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile
index 2f7ae4e1b66f..98c6ca1826d5 100644
--- a/science/ghemical/Makefile
+++ b/science/ghemical/Makefile
@@ -31,4 +31,5 @@ PLIST_SUB= GHEMICAL_VERSION="${PORTVERSION}"
MAKE_ENV= PKG_CONFIG=${LOCALBASE}/pkg-config
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/ghmm/Makefile b/science/ghmm/Makefile
index b271be9a6b53..8017a0aa0141 100644
--- a/science/ghmm/Makefile
+++ b/science/ghmm/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: ghmm
-# Date created: 2006-07-26
-# Whom: Cheng-Lung Sung <clsung@FreeBSD.org>
-#
+# Created by: Cheng-Lung Sung <clsung@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= ghmm
PORTVERSION= 0.7.0b
@@ -18,6 +14,7 @@ GNU_CONFIGURE= yes
USE_LDCONFIG= yes
WRKSRC= ${WRKDIR}/${PORTNAME}-0.7.0
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} 's|tests doc VisualC|tests VisualC|' ${WRKSRC}/configure
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index 50f185a15356..ece6f2ffa979 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -17,6 +17,7 @@ COMMENT?= GDL, a free IDL compatible incremental compiler
LICENSE= GPLv2
#---------------------------------------------------------------------------
+NO_STAGE= yes
# You may define these options:
#
# - WITHOUT_GRAPHICSMAGICK: remove GraphicsMagick support
diff --git a/science/gramps/Makefile b/science/gramps/Makefile
index 4e4b9c473c3d..8ec3bc666117 100644
--- a/science/gramps/Makefile
+++ b/science/gramps/Makefile
@@ -37,6 +37,7 @@ ENCHANT_DESC= Spellchecking support
PYWEBKITGTK_DESC= Use webkit backend for Geographic view
EXIV_DESC= Managing exiv metadata support
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MENCHANT}
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index 52e69e87ce1c..aca7807cc295 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -57,6 +57,7 @@ MAN1= do_dssp.1 editconf.1 eneconv.1 g_anadock.1 \
xpm2ps.1
MAN7= gromacs.7
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MATLAS}
diff --git a/science/gsmc/Makefile b/science/gsmc/Makefile
index e77a1dfaba84..10f31e2f0fbd 100644
--- a/science/gsmc/Makefile
+++ b/science/gsmc/Makefile
@@ -21,4 +21,5 @@ AUTOMAKE_ARGS= -i --add-missing --foreign --copy
MAN1= gsmc.1
PLIST_FILES= bin/gsmc
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/gtamsanalyzer/Makefile b/science/gtamsanalyzer/Makefile
index 90e692e897c5..e52390726b2e 100644
--- a/science/gtamsanalyzer/Makefile
+++ b/science/gtamsanalyzer/Makefile
@@ -20,6 +20,7 @@ USE_GNUSTEP_INSTALL= yes
WRKSRC= ${WRKDIR}/${DISTNAME}/Source
+NO_STAGE= yes
post-patch:
${RM} "${WRKSRC}/obj"
diff --git a/science/gwyddion/Makefile b/science/gwyddion/Makefile
index e9bbb970bbef..70cffde62e0e 100644
--- a/science/gwyddion/Makefile
+++ b/science/gwyddion/Makefile
@@ -38,6 +38,7 @@ GCONF_SCHEMAS= gwyddion-thumbnailer.schemas
MAN1= gwyddion.1 gwyddion-thumbnailer.1
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MPERL}
diff --git a/science/h5utils/Makefile b/science/h5utils/Makefile
index a267d8f9023e..dc10ea1afc0d 100644
--- a/science/h5utils/Makefile
+++ b/science/h5utils/Makefile
@@ -1,6 +1,4 @@
-# New ports collection makefile for: h5utils
-# Date created: Mar 11, 2011
-# Whom: Klaus Aehlig <aehlig@linta.de>
+# Created by: Klaus Aehlig <aehlig@linta.de>
# $FreeBSD$
PORTNAME= h5utils
@@ -27,4 +25,5 @@ LIB_DEPENDS += hdf5:${PORTSDIR}/science/hdf5 \
png15:${PORTSDIR}/graphics/png \
matheval.1:${PORTSDIR}/devel/libmatheval
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/harminv/Makefile b/science/harminv/Makefile
index 0f3d3d8c6044..3026f7f0abef 100644
--- a/science/harminv/Makefile
+++ b/science/harminv/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: science/harminv
-# Date created: 26 Dec 2009
-# Whom: Stas Timokhin <devel@stasyan.com>
-#
+# Created by: Stas Timokhin <devel@stasyan.com>
# $FreeBSD$
-#
PORTNAME= harminv
PORTVERSION= 1.3.1
@@ -30,6 +26,7 @@ LIB_DEPENDS+= guile.21:${PORTSDIR}/lang/guile \
blas.2:${PORTSDIR}/math/blas \
lapack.4:${PORTSDIR}/math/lapack
+NO_STAGE= yes
post-patch:
${REINPLACE_CMD} -e 's#%%PKGDIR%%#${PREFIX}/libdata#g' \
${WRKSRC}/Makefile.in
diff --git a/science/hdf-java/Makefile b/science/hdf-java/Makefile
index 962072abd57e..506f217d4546 100644
--- a/science/hdf-java/Makefile
+++ b/science/hdf-java/Makefile
@@ -37,6 +37,7 @@ WRKSRC= ${WRKDIR}/${PORTNAME}
OPTIONS_DEFINE= SZIP DOCS
SZIP_DESC= SZIP support (must match with science/hdf5-18)
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MSZIP}
diff --git a/science/hdf/Makefile b/science/hdf/Makefile
index 07cd491567e3..eafacd0e3188 100644
--- a/science/hdf/Makefile
+++ b/science/hdf/Makefile
@@ -27,6 +27,7 @@ USE_LDCONFIG= yes
MAN1= hdf.1 hdfunpac.1 ncdump.1 ncgen.1
MAN3= gr_chunk.3
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "powerpc"
diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile
index 3b4ad14a523d..3ebcb51cf74a 100644
--- a/science/hdf5-18/Makefile
+++ b/science/hdf5-18/Makefile
@@ -27,6 +27,7 @@ CONFIGURE_ARGS= --enable-cxx \
--with-pthread=/usr \
--with-zlib=/usr
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MDEBUG}
diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile
index a06dd96c4a13..e6f7d465a1f5 100644
--- a/science/hdf5/Makefile
+++ b/science/hdf5/Makefile
@@ -31,6 +31,7 @@ CONFIGURE_ARGS= --disable-debug \
ALL_TARGET= lib progs
MAKE_JOBS_UNSAFE= yes
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if defined(WITH_FORTRAN)
diff --git a/science/hs-bio/Makefile b/science/hs-bio/Makefile
index 2d685b87f086..d43cfb764ec3 100644
--- a/science/hs-bio/Makefile
+++ b/science/hs-bio/Makefile
@@ -15,5 +15,6 @@ USE_CABAL= mtl parallel parsec QuickCheck>=2 tagsoup>=0.8
EXECUTABLE= fastout flowclip flx frecover frename orf rselect-pe
+NO_STAGE= yes
.include "${.CURDIR}/../../lang/ghc/bsd.cabal.mk"
.include <bsd.port.mk>
diff --git a/science/isaac-cfd/Makefile b/science/isaac-cfd/Makefile
index 9a72669cdb56..5debbb72ce33 100644
--- a/science/isaac-cfd/Makefile
+++ b/science/isaac-cfd/Makefile
@@ -29,6 +29,7 @@ OPTIMIZED_FFLAGS_DESC= Use extra compiler (fortran) optimizations
DOCS_DISTFILES+= man.4_2.ps.gz
EXAMPLES_DISTFILES+= example_cases${EXTRACT_SUFX}
+NO_STAGE= yes
pre-configure:
@${REINPLACE_CMD} -e 's+%%FC%%+${FC}+g ; s+%%FFLAGS%%+${FFLAGS}+;' \
${WRKSRC}/makefile
diff --git a/science/jmol/Makefile b/science/jmol/Makefile
index c656d20cc6df..596d814a63a0 100644
--- a/science/jmol/Makefile
+++ b/science/jmol/Makefile
@@ -41,6 +41,7 @@ ALL_TARGET= main
NO_BUILD= yes
.endif
+NO_STAGE= yes
.include <bsd.port.pre.mk>
pre-fetch:
diff --git a/science/jstrack/Makefile b/science/jstrack/Makefile
index 5b5f92178ea4..3ccfa929d8bf 100644
--- a/science/jstrack/Makefile
+++ b/science/jstrack/Makefile
@@ -1,9 +1,5 @@
-# New ports collection Makefile for: JStrack
-# Date created: 2010-06-28
-# Whom: Chris Rees <utisoft@gmail.com>
-#
+# Created by: Chris Rees <utisoft@gmail.com>
# $FreeBSD$
-#
PORTNAME= jstrack
PORTVERSION= 3.3.4
@@ -34,6 +30,7 @@ SUB_LIST= WISH=${WISH}
PORTDOCS= 00-README_FIRST.txt HISTORY install.txt jstrackdoc-v2.pdf
+NO_STAGE= yes
do-install:
@${MKDIR} ${PREFIX}/lib/${PORTNAME}
.for f in filt httpfilt tracker
diff --git a/science/kalzium/Makefile b/science/kalzium/Makefile
index 12470973faaf..df04371ae0a3 100644
--- a/science/kalzium/Makefile
+++ b/science/kalzium/Makefile
@@ -30,4 +30,5 @@ USE_LDCONFIG= yes
MAN1= kalzium.1
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/kst2/Makefile b/science/kst2/Makefile
index bdba23cede4a..c39a45e7187b 100644
--- a/science/kst2/Makefile
+++ b/science/kst2/Makefile
@@ -31,6 +31,7 @@ FITS_DESC= Support for data in FITS format
MATLAB_DESC= Support for data in MATLAB format
NETCDF_DESC= Support for data in NetCDF format
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MFITS}
diff --git a/science/lamprop/Makefile b/science/lamprop/Makefile
index 06bae340f477..51a992386ba9 100644
--- a/science/lamprop/Makefile
+++ b/science/lamprop/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: lamprop
-# Date created: 15 May 2005
-# Whom: rsmith@xs4all.nl
-#
+# Created by: rsmith@xs4all.nl
# $FreeBSD$
-#
PORTNAME= lamprop
PORTVERSION= 1.3.3
@@ -28,6 +24,7 @@ MAKE_ENV= NOPORTDOCS=yes
PORTDOCS= LICENSE README NEWS
.endif
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e \
's|-pipe||; s|-fmerge-constants||; s|-fno-unit-at-a-time||; s|--fast-math||' \
diff --git a/science/libctl/Makefile b/science/libctl/Makefile
index a34e7175121c..78a9a684f554 100644
--- a/science/libctl/Makefile
+++ b/science/libctl/Makefile
@@ -17,6 +17,7 @@ USE_LDCONFIG= yes
MAN1= gen-ctl-io.1
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "sparc64"
diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile
index e94a25c39d4e..fca3d60c7bb4 100644
--- a/science/libghemical/Makefile
+++ b/science/libghemical/Makefile
@@ -26,4 +26,5 @@ USE_FORTRAN= yes
CONFIGURE_ARGS+= --enable-mpqc
PLIST_SUB= LIBGHEMICAL_VERSION="${PORTVERSION}"
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/libint/Makefile b/science/libint/Makefile
index 6eded75d17dd..07b8f8dc3897 100644
--- a/science/libint/Makefile
+++ b/science/libint/Makefile
@@ -17,6 +17,7 @@ ALL_TARGET= # empty
GNU_CONFIGURE= yes
CONFIGURE_ARGS= --enable-shared
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e 's|echo aout|echo elf|' ${WRKSRC}/configure
diff --git a/science/libkml/Makefile b/science/libkml/Makefile
index 90fd813892d4..9343f8ed097f 100644
--- a/science/libkml/Makefile
+++ b/science/libkml/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: libkml
-# Date created: 3rd Oct, 2009
-# Whom: Wen Heping <wen@FreeBSD.org>
-#
+# Created by: Wen Heping <wen@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= libkml
PORTVERSION= 1.2.0
@@ -23,4 +19,5 @@ USE_LDCONFIG= yes
CFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/liblinear/Makefile b/science/liblinear/Makefile
index 5319784b353c..b26de0282872 100644
--- a/science/liblinear/Makefile
+++ b/science/liblinear/Makefile
@@ -23,6 +23,7 @@ TXT_DOCS= COPYRIGHT README
PLIST_FILES= bin/train bin/predict
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${PORT_OPTIONS:MDOCS}
diff --git a/science/liboglappth/Makefile b/science/liboglappth/Makefile
index 379a06b866b0..6a708fb6f7f8 100644
--- a/science/liboglappth/Makefile
+++ b/science/liboglappth/Makefile
@@ -1,7 +1,4 @@
-# New ports collection makefile for: liboglappth
-# Date created: 2008/8/21
-# Whom: Nakata Maho <maho@FreeBSD.org>
-#
+# Created by: Nakata Maho <maho@FreeBSD.org>
# $FreeBSD$
PORTNAME= liboglappth
@@ -23,4 +20,5 @@ LDFLAGS+= -L${LOCALBASE}/lib
CFLAGS+= -I${LOCALBASE}/include
CXXFLAGS+= -I${LOCALBASE}/include
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/libquantum/Makefile b/science/libquantum/Makefile
index 0b515323e05d..aca35967082f 100644
--- a/science/libquantum/Makefile
+++ b/science/libquantum/Makefile
@@ -1,9 +1,5 @@
-# Ports collection makefile for: libquantum
-# Date created: 6 Aug, 2009
-# Whom: Wen Heping <wenheping@gmail.com>
-#
+# Created by: Wen Heping <wenheping@gmail.com>
# $FreeBSD$
-#
PORTNAME= libquantum
PORTVERSION= 1.1.0
@@ -18,4 +14,5 @@ USE_AUTOTOOLS= libtool
USE_GMAKE= yes
USE_LDCONFIG= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/libsvm-python/Makefile b/science/libsvm-python/Makefile
index a2b7fce34c2e..2fc14a85b1c3 100644
--- a/science/libsvm-python/Makefile
+++ b/science/libsvm-python/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: libsvm-python
-# Date Created: Nov 16 2004
-# Whom: rafan@infor.org
-#
+# Created by: rafan@infor.org
# $FreeBSD$
-#
PKGNAMESUFFIX= -python
@@ -13,4 +9,5 @@ MASTERDIR= ${.CURDIR}/../../science/libsvm
PLIST= ${.CURDIR}/pkg-plist
+NO_STAGE= yes
.include "${MASTERDIR}/Makefile"
diff --git a/science/libsvm/Makefile b/science/libsvm/Makefile
index e186a30d1f04..93b883a93bff 100644
--- a/science/libsvm/Makefile
+++ b/science/libsvm/Makefile
@@ -44,6 +44,7 @@ SUB_LIST= DATADIR=${DATADIR}
.endif
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${PORT_OPTIONS:MDOCS}
diff --git a/science/linsmith/Makefile b/science/linsmith/Makefile
index 5046ee31c868..355a8ab1809c 100644
--- a/science/linsmith/Makefile
+++ b/science/linsmith/Makefile
@@ -18,6 +18,7 @@ GNU_CONFIGURE= yes
CPPFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e \
'/^Icon/s|/usr/share|${PREFIX}/share|' \
diff --git a/science/massxpert/Makefile b/science/massxpert/Makefile
index ca1c9d0d919b..4d4380f3fc9d 100644
--- a/science/massxpert/Makefile
+++ b/science/massxpert/Makefile
@@ -30,4 +30,5 @@ MAKE_JOBS_UNSAFE= yes
MAN7= massxpert-data.7
MAN1= massxpert.1
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/mayavi/Makefile b/science/mayavi/Makefile
index 57251cd31d3e..51c45519b28a 100644
--- a/science/mayavi/Makefile
+++ b/science/mayavi/Makefile
@@ -25,6 +25,7 @@ PORTEXAMPLES= *
OPTIONS_DEFINE= DOCS EXAMPLES
+NO_STAGE= yes
.include <bsd.port.options.mk>
post-install:
diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile
index 7fe1d8eb1e56..81503ac10678 100644
--- a/science/mbdyn/Makefile
+++ b/science/mbdyn/Makefile
@@ -29,6 +29,7 @@ CHACO_DESC= Enable chaco-support
GINAC_DESC= Enable GiNaC-support (not implemented yet)
TCL_DESC= Enable tcl-support (not implemented yet)
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "powerpc"
diff --git a/science/mcstas/Makefile b/science/mcstas/Makefile
index 1480bcb4f4dc..cf68a2c4380e 100644
--- a/science/mcstas/Makefile
+++ b/science/mcstas/Makefile
@@ -38,6 +38,7 @@ MAN1= mcconvert.1 \
mcrun.1 \
mcstas.1 \
+NO_STAGE= yes
post-configure:
@cd ${WRKSRC}; make pgplot
diff --git a/science/medit/Makefile b/science/medit/Makefile
index 26253306f3dc..42e3de403f12 100644
--- a/science/medit/Makefile
+++ b/science/medit/Makefile
@@ -36,6 +36,7 @@ PLIST_FILES+= ${MESHES:S|^|%%EXAMPLESDIR%%/|}
PLIST_DIRS= %%EXAMPLESDIR%%
. endif
+NO_STAGE= yes
post-extract:
cd ${WRKDIR} && \
${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} ${_DISTDIR}/${LIBTARBALL} ${EXTRACT_AFTER_ARGS} --exclude ${MAKEFILE}
diff --git a/science/meep/Makefile b/science/meep/Makefile
index 500a1a5ec442..9918389152d1 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -33,6 +33,7 @@ OPTIONS_DEFINE= OPENMPI
OPTIONS_DEFAULT= OPENMPI
OPENMPI_DESC= MPI support
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MOPENMPI}
diff --git a/science/mei/Makefile b/science/mei/Makefile
index 2afd55913bec..d935076ec62a 100644
--- a/science/mei/Makefile
+++ b/science/mei/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: mei
-# Date created: Wed 18 apr 2012
-# Whom: thierry@pompo.net
-#
+# Created by: thierry@pompo.net
# $FreeBSD$
-#
PORTNAME= mei
PORTVERSION= 1.0.3
@@ -30,6 +26,7 @@ CONFIGURE_ARGS= --with-bft=${LOCALBASE}
MAN1= mei-config.1
.if defined(MAINTAINER_MODE)
+NO_STAGE= yes
regression-test:
(cd ${WRKSRC}/tests && \
${MAKE} check && \
diff --git a/science/minc/Makefile b/science/minc/Makefile
index d69f36d72683..4d8ddb7edcd4 100644
--- a/science/minc/Makefile
+++ b/science/minc/Makefile
@@ -1,10 +1,5 @@
-############################################################################
-# New ports collection Makefile for: minc 1.x (Medical Imaging NetCDF)
-# Date created: 21 Dec 2005
-# Whom: jbacon
-#
+# Created by: jbacon
# $FreeBSD$
-#
############################################################################
# http://www.bic.mni.mcgill.ca/software/minc/
@@ -76,6 +71,7 @@ MAN3= ParseArgv.3
FETCH_ARGS+= -F
+NO_STAGE= yes
post-install:
@${CAT} ${PKGMESSAGE}
diff --git a/science/minc2/Makefile b/science/minc2/Makefile
index 2c2558ee4083..05456dbef8c9 100644
--- a/science/minc2/Makefile
+++ b/science/minc2/Makefile
@@ -33,6 +33,7 @@ CMAKE_ARGS= -DMINC2_BUILD_SHARED_LIBS:BOOL=YES
CONFLICTS= minc-1* zh-tk-[0-9]*
LATEST_LINK= minc2
+NO_STAGE= yes
post-install:
${CAT} ${PKGMESSAGE}
diff --git a/science/mol2ps/Makefile b/science/mol2ps/Makefile
index b90d97a4f1e5..0cf639dbed47 100644
--- a/science/mol2ps/Makefile
+++ b/science/mol2ps/Makefile
@@ -25,6 +25,7 @@ USE_FPC= yes
PLIST_FILES= bin/${PORTNAME} bin/mol2svg %%DATADIR%%/color.conf
PLIST_DIRS= %%DATADIR%%
+NO_STAGE= yes
do-build:
(cd ${WRKSRC} && ${LOCALBASE}/bin/fpc ${EXTRACT_ONLY} -S2 -O3)
diff --git a/science/mpb/Makefile b/science/mpb/Makefile
index e757754759da..22e232a774e6 100644
--- a/science/mpb/Makefile
+++ b/science/mpb/Makefile
@@ -20,6 +20,7 @@ LIB_DEPENDS= fftw:${PORTSDIR}/math/fftw \
USE_FORTRAN= yes
+NO_STAGE= yes
.include <bsd.port.pre.mk>
GNU_CONFIGURE= yes
CPPFLAGS+= -I${LOCALBASE}/include
diff --git a/science/mpqc-mpich/Makefile b/science/mpqc-mpich/Makefile
index 4185496a1ffc..7e3ffdf01836 100644
--- a/science/mpqc-mpich/Makefile
+++ b/science/mpqc-mpich/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: mpqc-mpich
-# Date created: 27 April 2001
-# Whom: Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
-#
+# Created by: Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
# $FreeBSD$
-#
MASTERDIR= ${.CURDIR}/../mpqc
@@ -11,4 +7,5 @@ PKGNAMESUFFIX= -mpich
WITH_MPICH= yes
+NO_STAGE= yes
.include "${MASTERDIR}/Makefile"
diff --git a/science/mpqc/Makefile b/science/mpqc/Makefile
index 58730589402b..f70f6510e21b 100644
--- a/science/mpqc/Makefile
+++ b/science/mpqc/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: mpqc
-# Date created: 27 April 2001
-# Whom: batman <batman@udel.edu>
-#
+# Created by: batman <batman@udel.edu>
# $FreeBSD$
-#
PORTNAME= mpqc
PORTVERSION= 2.3.1
@@ -18,6 +14,7 @@ USES= perl5 gmake
USE_BZIP2= yes
USE_LDCONFIG= yes
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if defined(WITH_ICC)
diff --git a/science/ncs/Makefile b/science/ncs/Makefile
index fa8125003e1b..f98b55fb4c54 100644
--- a/science/ncs/Makefile
+++ b/science/ncs/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: ncs
-# Date created: Sun 1 apr 2007
-# Whom: thierry@pompo.net
-#
+# Created by: thierry@pompo.net
# $FreeBSD$
-#
PORTNAME= ncs
PORTVERSION= 2.0.4
@@ -85,6 +81,7 @@ INSTALL_TARGET= install install-pdf
DOCS= AUTHORS COMPATIBILITY ChangeLog README
.endif
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if exists(${LOCALBASE}/lib/libatlas.so) && !defined(WITH_BLAS)
diff --git a/science/netcdf-ftn/Makefile b/science/netcdf-ftn/Makefile
index aa919e0ed7bc..246ec847cb6d 100644
--- a/science/netcdf-ftn/Makefile
+++ b/science/netcdf-ftn/Makefile
@@ -11,4 +11,5 @@ MASTERDIR= ${.CURDIR}/../netcdf4
WITH_FORTRAN= yes
+NO_STAGE= yes
.include "${MASTERDIR}/Makefile"
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
index 3a4853f9cc1e..31c234be62a8 100644
--- a/science/netcdf/Makefile
+++ b/science/netcdf/Makefile
@@ -28,6 +28,7 @@ MAN3= netcdf.3
OPTIONS_DEFINE= FORTRAN DOCS
FORTRAN_DESC= Build library for Fortran
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MDOCS}
diff --git a/science/netcdf3-ftn/Makefile b/science/netcdf3-ftn/Makefile
index d8ad6eef9011..2246db0e7cfc 100644
--- a/science/netcdf3-ftn/Makefile
+++ b/science/netcdf3-ftn/Makefile
@@ -11,4 +11,5 @@ MASTERDIR= ${.CURDIR}/../netcdf
WITH_FORTRAN= yes
+NO_STAGE= yes
.include "${MASTERDIR}/Makefile"
diff --git a/science/netcdf4/Makefile b/science/netcdf4/Makefile
index 7cb40988b511..a9cc6d4145dc 100644
--- a/science/netcdf4/Makefile
+++ b/science/netcdf4/Makefile
@@ -36,6 +36,7 @@ INFO= netcdf netcdf-c netcdf-cxx netcdf-f77 netcdf-f90 \
MAN1= nccopy.1 ncdump.1 ncgen.1 ncgen3.1
MAN3= netcdf.3
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MDAP}
diff --git a/science/nifticlib/Makefile b/science/nifticlib/Makefile
index e4821f5dde79..02ebc5acbff7 100644
--- a/science/nifticlib/Makefile
+++ b/science/nifticlib/Makefile
@@ -13,6 +13,7 @@ USES= gmake
MAN1= nifticlib.1
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e 's/include depend.mk/-&/' \
${WRKSRC}/fsliolib/Makefile ${WRKSRC}/nifticdf/Makefile \
diff --git a/science/omnetpp/Makefile b/science/omnetpp/Makefile
index 63903eed4c6e..8996530fb640 100644
--- a/science/omnetpp/Makefile
+++ b/science/omnetpp/Makefile
@@ -41,6 +41,7 @@ MAGICK_DESC= Install ImageMagick for EPS-JPG conversion
GRAPHVIZ_DESC= Install Graphviz for generating diagrams
DOXYGEN_DESC= Install Doxygen to create the API reference
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${PORT_OPTIONS:MMAGICK}
diff --git a/science/openbabel/Makefile b/science/openbabel/Makefile
index 8ddb1759df24..b888168a6f63 100644
--- a/science/openbabel/Makefile
+++ b/science/openbabel/Makefile
@@ -41,6 +41,7 @@ OPTIONS_DEFINE= CAIRO PYTHON
OPTIONS_DEFAULT= PYTHON
CAIRO_DESC= PNG support via cairo library
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MCAIRO}
diff --git a/science/ovt/Makefile b/science/ovt/Makefile
index ca3a95876d63..45a7d0eea7cb 100644
--- a/science/ovt/Makefile
+++ b/science/ovt/Makefile
@@ -29,4 +29,5 @@ CONFIGURE_ARGS= --with-jdk=${JAVA_HOME}
PLIST_SUB+= PORTVERSION=${PORTVERSION}
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Algorithm-SVMLight/Makefile b/science/p5-Algorithm-SVMLight/Makefile
index b52486afd561..cd85b1b38f18 100644
--- a/science/p5-Algorithm-SVMLight/Makefile
+++ b/science/p5-Algorithm-SVMLight/Makefile
@@ -18,6 +18,7 @@ USE_PERL5= modbuild
MAN3= Algorithm::SVMLight.3
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e "s,%%LOCALBASE%%,${LOCALBASE},g" \
${WRKSRC}/Build.PL
diff --git a/science/p5-Chemistry-3DBuilder/Makefile b/science/p5-Chemistry-3DBuilder/Makefile
index 07a89bed0f43..2be218d7d9f0 100644
--- a/science/p5-Chemistry-3DBuilder/Makefile
+++ b/science/p5-Chemistry-3DBuilder/Makefile
@@ -29,4 +29,5 @@ USE_PERL5= configure
MAN3= Chemistry::3DBuilder.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Bond-Find/Makefile b/science/p5-Chemistry-Bond-Find/Makefile
index 81e9b27de04c..1b0b3d64f8f2 100644
--- a/science/p5-Chemistry-Bond-Find/Makefile
+++ b/science/p5-Chemistry-Bond-Find/Makefile
@@ -19,4 +19,5 @@ MAN3= Chemistry::Bond::Find.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Canonicalize/Makefile b/science/p5-Chemistry-Canonicalize/Makefile
index 38bc78d375b5..b766f98f2c4b 100644
--- a/science/p5-Chemistry-Canonicalize/Makefile
+++ b/science/p5-Chemistry-Canonicalize/Makefile
@@ -19,4 +19,5 @@ MAN3= Chemistry::Canonicalize.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Elements/Makefile b/science/p5-Chemistry-Elements/Makefile
index 7e94a5e423ee..a280a40a18df 100644
--- a/science/p5-Chemistry-Elements/Makefile
+++ b/science/p5-Chemistry-Elements/Makefile
@@ -15,4 +15,5 @@ USE_PERL5= configure
MAN3= Chemistry::Elements.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-MDLMol/Makefile b/science/p5-Chemistry-File-MDLMol/Makefile
index 32f12059b409..025ffab4e336 100644
--- a/science/p5-Chemistry-File-MDLMol/Makefile
+++ b/science/p5-Chemistry-File-MDLMol/Makefile
@@ -21,4 +21,5 @@ MAN3= Chemistry::File::MDLMol.3 Chemistry::File::SDF.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-Mopac/Makefile b/science/p5-Chemistry-File-Mopac/Makefile
index 6ae569e5a77d..9869db33ba2e 100644
--- a/science/p5-Chemistry-File-Mopac/Makefile
+++ b/science/p5-Chemistry-File-Mopac/Makefile
@@ -21,4 +21,5 @@ MAN3= Chemistry::File::Mopac.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-PDB/Makefile b/science/p5-Chemistry-File-PDB/Makefile
index d3b721f91cfe..7ce72110f96b 100644
--- a/science/p5-Chemistry-File-PDB/Makefile
+++ b/science/p5-Chemistry-File-PDB/Makefile
@@ -19,4 +19,5 @@ USE_PERL5= configure
MAN3= Chemistry::File::PDB.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-SLN/Makefile b/science/p5-Chemistry-File-SLN/Makefile
index d7ef6f959ef9..bf04eae60a0e 100644
--- a/science/p5-Chemistry-File-SLN/Makefile
+++ b/science/p5-Chemistry-File-SLN/Makefile
@@ -27,4 +27,5 @@ MAN3= Chemistry::File::SLN.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-SMARTS/Makefile b/science/p5-Chemistry-File-SMARTS/Makefile
index bf78fc5cdb5d..2cba1098cf00 100644
--- a/science/p5-Chemistry-File-SMARTS/Makefile
+++ b/science/p5-Chemistry-File-SMARTS/Makefile
@@ -25,4 +25,5 @@ MAN3= Chemistry::File::SMARTS.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-SMILES/Makefile b/science/p5-Chemistry-File-SMILES/Makefile
index 38cf48a055b4..e01af8440166 100644
--- a/science/p5-Chemistry-File-SMILES/Makefile
+++ b/science/p5-Chemistry-File-SMILES/Makefile
@@ -25,4 +25,5 @@ MAN3= Chemistry::File::SMILES.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-VRML/Makefile b/science/p5-Chemistry-File-VRML/Makefile
index b07ba6703478..a5a1b2482db7 100644
--- a/science/p5-Chemistry-File-VRML/Makefile
+++ b/science/p5-Chemistry-File-VRML/Makefile
@@ -19,4 +19,5 @@ MAN3= Chemistry::File::VRML.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-XYZ/Makefile b/science/p5-Chemistry-File-XYZ/Makefile
index a354a097a953..01287f54080c 100644
--- a/science/p5-Chemistry-File-XYZ/Makefile
+++ b/science/p5-Chemistry-File-XYZ/Makefile
@@ -19,4 +19,5 @@ MAN3= Chemistry::File::XYZ.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-FormulaPattern/Makefile b/science/p5-Chemistry-FormulaPattern/Makefile
index 5d0884bfbd99..9d9cab85ad59 100644
--- a/science/p5-Chemistry-FormulaPattern/Makefile
+++ b/science/p5-Chemistry-FormulaPattern/Makefile
@@ -21,4 +21,5 @@ MAN3= Chemistry::FormulaPattern.3 Chemistry::File::FormulaPattern.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-InternalCoords/Makefile b/science/p5-Chemistry-InternalCoords/Makefile
index 78cb636918f4..affc5bfc100f 100644
--- a/science/p5-Chemistry-InternalCoords/Makefile
+++ b/science/p5-Chemistry-InternalCoords/Makefile
@@ -23,4 +23,5 @@ MAN3= Chemistry::InternalCoords.3 Chemistry::InternalCoords::Builder.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Isotope/Makefile b/science/p5-Chemistry-Isotope/Makefile
index 97db60dbbeaf..20957e723114 100644
--- a/science/p5-Chemistry-Isotope/Makefile
+++ b/science/p5-Chemistry-Isotope/Makefile
@@ -16,4 +16,5 @@ MAN3= Chemistry::Isotope.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-MacroMol/Makefile b/science/p5-Chemistry-MacroMol/Makefile
index fb7e109059c3..ca95fa33c948 100644
--- a/science/p5-Chemistry-MacroMol/Makefile
+++ b/science/p5-Chemistry-MacroMol/Makefile
@@ -18,4 +18,5 @@ USE_PERL5= configure
MAN3= Chemistry::MacroMol.3 Chemistry::Domain.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-MidasPattern/Makefile b/science/p5-Chemistry-MidasPattern/Makefile
index 99ece6108b84..410643b95ff9 100644
--- a/science/p5-Chemistry-MidasPattern/Makefile
+++ b/science/p5-Chemistry-MidasPattern/Makefile
@@ -25,4 +25,5 @@ MAN3= Chemistry::MidasPattern.3 Chemistry::File::MidasPattern.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Mok/Makefile b/science/p5-Chemistry-Mok/Makefile
index fe88eec1e724..61bc88f1610b 100644
--- a/science/p5-Chemistry-Mok/Makefile
+++ b/science/p5-Chemistry-Mok/Makefile
@@ -26,4 +26,5 @@ MAN3= Chemistry::Mok.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Mol/Makefile b/science/p5-Chemistry-Mol/Makefile
index 2adc9487312b..8982769bf925 100644
--- a/science/p5-Chemistry-Mol/Makefile
+++ b/science/p5-Chemistry-Mol/Makefile
@@ -21,4 +21,5 @@ MAN3= Chemistry::Atom.3 Chemistry::Bond.3 \
Chemistry::Tutorial.3 Chemistry::File::Dumper.3 \
Chemistry::Mol.3 Chemistry::File::Formula.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Pattern/Makefile b/science/p5-Chemistry-Pattern/Makefile
index 22f027e474a9..0480aa5fd76e 100644
--- a/science/p5-Chemistry-Pattern/Makefile
+++ b/science/p5-Chemistry-Pattern/Makefile
@@ -19,4 +19,5 @@ MAN3= Chemistry::Pattern.3 Chemistry::Pattern::Atom.3 Chemistry::Pattern::Bond.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Reaction/Makefile b/science/p5-Chemistry-Reaction/Makefile
index fb0a5e6fec21..1174331659a1 100644
--- a/science/p5-Chemistry-Reaction/Makefile
+++ b/science/p5-Chemistry-Reaction/Makefile
@@ -25,4 +25,5 @@ MAN3= Chemistry::Reaction.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-Ring/Makefile b/science/p5-Chemistry-Ring/Makefile
index 1bb649b93b6c..f9133fb4b5e2 100644
--- a/science/p5-Chemistry-Ring/Makefile
+++ b/science/p5-Chemistry-Ring/Makefile
@@ -21,4 +21,5 @@ MAN3= Chemistry::Ring.3 Chemistry::Ring::Find.3
USES= perl5
USE_PERL5= configure
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Geo-BUFR/Makefile b/science/p5-Geo-BUFR/Makefile
index 4f393805fc4f..6d9b7082f1ca 100644
--- a/science/p5-Geo-BUFR/Makefile
+++ b/science/p5-Geo-BUFR/Makefile
@@ -31,4 +31,5 @@ MAN3= Geo::BUFR.3 \
Geo::bufrread.3 \
Geo::bufrresolve.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Geo-Coordinates-Converter-iArea/Makefile b/science/p5-Geo-Coordinates-Converter-iArea/Makefile
index 8f967c1413f7..9966dff42f7a 100644
--- a/science/p5-Geo-Coordinates-Converter-iArea/Makefile
+++ b/science/p5-Geo-Coordinates-Converter-iArea/Makefile
@@ -21,4 +21,5 @@ USES= perl5
MAN3= Geo::Coordinates::Converter::iArea.3 \
Geo::Coordinates::Converter::Format::IArea.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Geo-Coordinates-Converter/Makefile b/science/p5-Geo-Coordinates-Converter/Makefile
index 6cd9f74acbe7..f930dd74ce99 100644
--- a/science/p5-Geo-Coordinates-Converter/Makefile
+++ b/science/p5-Geo-Coordinates-Converter/Makefile
@@ -30,4 +30,5 @@ MAN3= Geo::Coordinates::Converter::Datum.3 \
Geo::Coordinates::Converter::Format.3 \
Geo::Coordinates::Converter::Format::ISO6709.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Geo-ReadGRIB/Makefile b/science/p5-Geo-ReadGRIB/Makefile
index df101b9172b4..2c80dd29bf7a 100644
--- a/science/p5-Geo-ReadGRIB/Makefile
+++ b/science/p5-Geo-ReadGRIB/Makefile
@@ -17,4 +17,5 @@ MAN3= Geo::ReadGRIB.3 \
Geo::ReadGRIB::Place.3 \
Geo::ReadGRIB::PlaceIterator.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Geo-WebService-Elevation-USGS/Makefile b/science/p5-Geo-WebService-Elevation-USGS/Makefile
index e06831e7ca43..8b2cc0724d65 100644
--- a/science/p5-Geo-WebService-Elevation-USGS/Makefile
+++ b/science/p5-Geo-WebService-Elevation-USGS/Makefile
@@ -23,4 +23,5 @@ USE_PERL5= configure
MAN3= Geo::WebService::Elevation::USGS.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-PerlMol/Makefile b/science/p5-PerlMol/Makefile
index 35de73345a0f..721f3cf826af 100644
--- a/science/p5-PerlMol/Makefile
+++ b/science/p5-PerlMol/Makefile
@@ -63,4 +63,5 @@ USE_PERL5= configure
MAN3= PerlMol.3
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/p5-Physics-Unit/Makefile b/science/p5-Physics-Unit/Makefile
index ebaeee249833..cc10c967c6a0 100644
--- a/science/p5-Physics-Unit/Makefile
+++ b/science/p5-Physics-Unit/Makefile
@@ -24,6 +24,7 @@ MAN3= Physics::Unit.3 \
Physics::Unit::UnitsByName.3 \
Physics::Unit::UnitsByType.3
+NO_STAGE= yes
post-install:
.if !defined(NOPORTEXAMPLES)
${MKDIR} ${EXAMPLESDIR}
diff --git a/science/paje/Makefile b/science/paje/Makefile
index 8cf17b766413..23a72aa13a0c 100644
--- a/science/paje/Makefile
+++ b/science/paje/Makefile
@@ -22,6 +22,7 @@ USE_GNUSTEP_INSTALL= yes
WRKSRC= ${WRKDIR}/${DISTNAME}
MAKE_ENV+= GNUSTEP_INSTALLATION_DIR=${GNUSTEP_LOCAL_ROOT}
+NO_STAGE= yes
post-patch:
${REINPLACE_CMD} -e 's|^GNUSTEP_INSTALLATION_DOMAIN|#GNUSTEP_INSTALLATION_DOMAIN|' \
${WRKSRC}/GNUmakefile
diff --git a/science/paraview/Makefile b/science/paraview/Makefile
index ef3a76a2703c..1843ffa78dc4 100644
--- a/science/paraview/Makefile
+++ b/science/paraview/Makefile
@@ -1,4 +1,4 @@
-# Created by: anholt@FreeBSD.ORG
+# Created by: anholt@FreeBSD.org
# $FreeBSD$
PORTNAME= paraview
@@ -58,6 +58,7 @@ GL2PS_DESC= Install support conversion OpenGL to PostScript
VERMAJORMINOR= ${PORTVERSION:R}
+NO_STAGE= yes
.include <bsd.port.options.mk>
# Simple solution to avoid lots of patching to support NOPORTDOCS
diff --git a/science/peekabot/Makefile b/science/peekabot/Makefile
index 1359127e884f..b98eeb91ff1c 100644
--- a/science/peekabot/Makefile
+++ b/science/peekabot/Makefile
@@ -28,6 +28,7 @@ USE_LDCONFIG= yes
CPPFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "sparc64"
diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile
index 0f7d6fcf1b1c..ded83f628d5f 100644
--- a/science/pnetcdf/Makefile
+++ b/science/pnetcdf/Makefile
@@ -30,6 +30,7 @@ PLIST_FILES= bin/ncmpidiff bin/ncmpidump bin/ncmpigen bin/ncvalid \
include/pnetcdf.h include/pnetcdf.inc include/pnetcdf.mod \
lib/libpnetcdf.a
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MOPENMPI}
diff --git a/science/psi3/Makefile b/science/psi3/Makefile
index 4c32fbb5a399..c1bbf1bfcc40 100644
--- a/science/psi3/Makefile
+++ b/science/psi3/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: psi3
-# Date created: March 17 2004
-# Whom: NAKATA Maho <maho@FreeBSD.org>
-#
+# Created by: NAKATA Maho <maho@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= psi3
PORTVERSION= 3.4.0
@@ -61,6 +57,7 @@ CONFIGURE_ARGS= --with-cc=${CC} \
--with-libdirs="-L${LOCALBASE}/lib" \
--with-libs="-lcompat"
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if defined(WITH_OPTIMIZED_FLAGS)
diff --git a/science/psychopy/Makefile b/science/psychopy/Makefile
index bcd6fc78bc15..96dbb6881b59 100644
--- a/science/psychopy/Makefile
+++ b/science/psychopy/Makefile
@@ -23,4 +23,5 @@ USE_PYTHON= yes
USE_PYDISTUTILS= easy_install
PYDISTUTILS_PKGNAME= PsychoPy
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-DendroPy/Makefile b/science/py-DendroPy/Makefile
index 853792c61bec..095709f7fdec 100644
--- a/science/py-DendroPy/Makefile
+++ b/science/py-DendroPy/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: py-DendroPy
-# Date created: 09 Jan, 2010
-# Whom: Wen Heping <wenheping@gmail.com>
-#
+# Created by: Wen Heping <wenheping@gmail.com>
# $FreeBSD$
-#
PORTNAME= DendroPy
PORTVERSION= 3.12.0
@@ -19,6 +15,7 @@ LICENSE= BSD
USE_PYTHON= yes
USE_PYDISTUTILS= easy_install
+NO_STAGE= yes
post-install:
@${CAT} ${PKGMESSAGE}
diff --git a/science/py-coards/Makefile b/science/py-coards/Makefile
index 1e001028da7a..a531b4f6ce47 100644
--- a/science/py-coards/Makefile
+++ b/science/py-coards/Makefile
@@ -15,4 +15,5 @@ LICENSE= MIT
USE_PYTHON= 2.7
USE_PYDISTUTILS= easy_install
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile
index 14ab4b1b6e26..2b3e4f931d2b 100644
--- a/science/py-h5py/Makefile
+++ b/science/py-h5py/Makefile
@@ -18,6 +18,7 @@ OPTIONS_DEFINE= NEW_HDF5
NEW_HDF5_DESC= Use port science/hdf5-18 instead of science/hdf5
OPTIONSFILE?= ${PORT_DBDIR}/py-${PORTNAME}/options
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MNEW_HDF5}
LIB_DEPENDS= hdf5:${PORTSDIR}/science/hdf5-18
diff --git a/science/py-hcluster/Makefile b/science/py-hcluster/Makefile
index 9382ac4c0f03..ffbe0b558361 100644
--- a/science/py-hcluster/Makefile
+++ b/science/py-hcluster/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: py-hcluster
-# Date created: 2008-09-04
-# Whom: Wen Heping <wenheping@gmail.com>
-#
+# Created by: Wen Heping <wenheping@gmail.com>
# $FreeBSD$
-#
PORTNAME= hcluster
PORTVERSION= 0.2.0
@@ -22,4 +18,5 @@ RUN_DEPENDS:= ${BUILD_DEPENDS}
USE_PYTHON= yes
USE_PYDISTUTILS= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-mdp/Makefile b/science/py-mdp/Makefile
index 2b33b64ef7c4..daecd73a5820 100644
--- a/science/py-mdp/Makefile
+++ b/science/py-mdp/Makefile
@@ -1,9 +1,5 @@
-# Ports collection makefile for: mdp
-# Date created: September 9, 2008
-# Whom: Li-Lun Wang <llwang@infor.org>
-#
+# Created by: Li-Lun Wang <llwang@infor.org>
# $FreeBSD$
-#
PORTNAME= mdp
PORTVERSION= 3.2
@@ -27,6 +23,7 @@ LIBSVM_DESC= Provide the LibSVMClassifier node
PP_DESC= Provide the Parallel Python PPScheduler
SCIPY_DESC= Instal SciPy versions of eigensolver, FFT and convolution
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MLIBSVM}
diff --git a/science/py-mlpy/Makefile b/science/py-mlpy/Makefile
index db845410671d..40dcdc13dd21 100644
--- a/science/py-mlpy/Makefile
+++ b/science/py-mlpy/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: py-mlpy
-# Date created: 18 April, 2009
-# Whom: Wen Heping <wenheping@gmail.com>
-#
+# Created by: Wen Heping <wenheping@gmail.com>
# $FreeBSD$
-#
PORTNAME= mlpy
PORTVERSION= 2.2.2
@@ -27,4 +23,5 @@ USE_PYTHON= yes
USE_PYDISTUTILS= yes
PYDISTUTILS_PKGNAME= MLPY
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile
index e8bf78acab06..045828f5da4b 100644
--- a/science/py-netCDF4/Makefile
+++ b/science/py-netCDF4/Makefile
@@ -41,6 +41,7 @@ PLIST_FILES= bin/nc3tonc4 \
%%PYTHON_SITELIBDIR%%/netcdftime.pyc \
%%PYTHON_SITELIBDIR%%/netcdftime.pyo
+NO_STAGE= yes
.include <bsd.port.options.mk>
post-patch:
diff --git a/science/py-obspy/Makefile b/science/py-obspy/Makefile
index f7bafd157868..c51139a49338 100644
--- a/science/py-obspy/Makefile
+++ b/science/py-obspy/Makefile
@@ -25,6 +25,7 @@ USE_PYTHON= yes
USE_PYDISTUTILS= easy_install
PYEASYINSTALL_ARCHDEP= yes
+NO_STAGE= yes
post-patch:
${REINPLACE_CMD} -e "s#FC#${FC}#g" ${WRKSRC}/setup.py
diff --git a/science/py-paida/Makefile b/science/py-paida/Makefile
index 5f4ba9dd7cc0..e82ea79cb293 100644
--- a/science/py-paida/Makefile
+++ b/science/py-paida/Makefile
@@ -20,4 +20,5 @@ USE_PYTHON= yes
USE_PYDISTUTILS= yes
PYDISTUTILS_PKGVERSION= 3.2.1_2.10.1
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-pupynere/Makefile b/science/py-pupynere/Makefile
index 004c30da06d0..2bceb7f49dea 100644
--- a/science/py-pupynere/Makefile
+++ b/science/py-pupynere/Makefile
@@ -19,4 +19,5 @@ USE_PYTHON= -2.7
USE_PYDISTUTILS= easy_install
PYDISTUTILS_NOEGGINFO= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-pydicom/Makefile b/science/py-pydicom/Makefile
index 322515bdfa08..b8e0545056bc 100644
--- a/science/py-pydicom/Makefile
+++ b/science/py-pydicom/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: py-pydicom
-# Date created: 2009-01-13
-# Whom: Wen Heping <wenheping@gmail.com>
-#
+# Created by: Wen Heping <wenheping@gmail.com>
# $FreeBSD$
-#
PORTNAME= pydicom
PORTVERSION= 0.9.4.1
@@ -20,4 +16,5 @@ USE_PYTHON= yes
USE_PYDISTUTILS= easy_install
PYDISTUTILS_PKGVERSION= 0.9.4_1
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-scikit-learn/Makefile b/science/py-scikit-learn/Makefile
index 91d6c7c4381e..d46f64490c9c 100644
--- a/science/py-scikit-learn/Makefile
+++ b/science/py-scikit-learn/Makefile
@@ -1,5 +1,4 @@
-# Created by: Dmitry Sivachenko <demon@FreeBSD.org>
-#
+# Created by: Dmitry Sivachenko <demon@FreeBSD.org>
# $FreeBSD$
PORTNAME= scikit-learn
@@ -23,4 +22,5 @@ LATEST_LINK= py-${PORTNAME}
USE_PYTHON= -2.7
USE_PYDISTUTILS= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-scimath/Makefile b/science/py-scimath/Makefile
index 967ba6a0ed2d..ef98f13bea07 100644
--- a/science/py-scimath/Makefile
+++ b/science/py-scimath/Makefile
@@ -17,4 +17,5 @@ USE_PYTHON= yes
PYEASYINSTALL_ARCHDEP= yes
USE_PYDISTUTILS= easy_install
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/py-scipy/Makefile b/science/py-scipy/Makefile
index 68171f3af871..425749362912 100644
--- a/science/py-scipy/Makefile
+++ b/science/py-scipy/Makefile
@@ -34,6 +34,7 @@ OPTIONS_DEFAULT=SUITESPARSE
ATLAS_DESC= Use optimized blas library
SUITESPARSE_DESC= Use AMD and UMFPACK in SuiteSparse
+NO_STAGE= yes
post-patch:
@${GREP} -lR "malloc\.h" ${WRKSRC} | ${XARGS} ${REINPLACE_CMD} \
-e "s@malloc\.h@stdlib.h@"
diff --git a/science/py-ws2300/Makefile b/science/py-ws2300/Makefile
index 59401f0c4542..d4cbb83d7b3d 100644
--- a/science/py-ws2300/Makefile
+++ b/science/py-ws2300/Makefile
@@ -16,6 +16,7 @@ USE_PYDISTUTILS= yes
MAN1= ws2300.1
+NO_STAGE= yes
post-install:
#@${LN} -sf ${PYTHONPREFIX_SITELIBDIR}/ws2300.py ${PREFIX}/bin/ws2300
@${INSTALL_SCRIPT} ${FILESDIR}/ws2300 ${PREFIX}/bin/ws2300
diff --git a/science/pybrain/Makefile b/science/pybrain/Makefile
index 4978ebb5acff..6a7d3638070c 100644
--- a/science/pybrain/Makefile
+++ b/science/pybrain/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: PyBrain
-# Date created: 18 Nov, 2009
-# Whom: Wen Heping <wenheping@gmail.com>
-#
+# Created by: Wen Heping <wenheping@gmail.com>
# $FreeBSD$
-#
PORTNAME= pybrain
PORTVERSION= 0.3
@@ -20,4 +16,5 @@ USE_PYTHON= yes
USE_PYDISTUTILS= easy_install
PYDISTUTILS_PKGNAME= PyBrain
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/pycdf/Makefile b/science/pycdf/Makefile
index 89981edf91c5..557efe259677 100644
--- a/science/pycdf/Makefile
+++ b/science/pycdf/Makefile
@@ -1,9 +1,5 @@
-# Ports collection makefile for: pycdf
-# Date created: 30 April, 2008
-# Whom: wenheping@gmail.com
-#
+# Created by: wenheping@gmail.com
# $FreeBSD$
-#
PORTNAME= pycdf
PORTVERSION= 0.6.3
@@ -26,4 +22,5 @@ PYTHON_PKGNAMEPREFIX= yes
PYDISTUTILS_EGGINFO= pycdf-0.6_3b-py${PYTHON_VER}.egg-info
WRKSRC= ${WRKDIR}/${DISTNAME}
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/pynn/Makefile b/science/pynn/Makefile
index e6ffb75d8b84..c7dc28bedfc8 100644
--- a/science/pynn/Makefile
+++ b/science/pynn/Makefile
@@ -18,4 +18,5 @@ USE_PYTHON= yes
USE_PYDISTUTILS= yes
PYDISTUTILS_PKGNAME= PyNN
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/pyteomics.biolccc/Makefile b/science/pyteomics.biolccc/Makefile
index e0ca72d7ce29..9dcc3e71bcfb 100644
--- a/science/pyteomics.biolccc/Makefile
+++ b/science/pyteomics.biolccc/Makefile
@@ -12,4 +12,5 @@ COMMENT= Python bindings for BioLCCC
USE_PYTHON= yes
USE_PYDISTUTILS= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/pyteomics/Makefile b/science/pyteomics/Makefile
index 191fc79afb5c..5c066ea92d11 100644
--- a/science/pyteomics/Makefile
+++ b/science/pyteomics/Makefile
@@ -16,4 +16,5 @@ RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:${PORTSDIR}/devel/py-lxml \
USE_PYTHON= yes
USE_PYDISTUTILS= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/qcl/Makefile b/science/qcl/Makefile
index 681dca8037d0..6ab3df08db25 100644
--- a/science/qcl/Makefile
+++ b/science/qcl/Makefile
@@ -10,6 +10,7 @@ EXTRACT_SUFX= .tgz
MAINTAINER= ports@FreeBSD.org
COMMENT= A quantum computer simulator
+NO_STAGE= yes
do-configure:
echo 'PREFIX=${PREFIX}' >>${WRKSRC}/Makefile
cd ${WRKSRC} && make dep
diff --git a/science/qtresistors/Makefile b/science/qtresistors/Makefile
index 7d646885a77c..bfd20933862c 100644
--- a/science/qtresistors/Makefile
+++ b/science/qtresistors/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: qtresistors
-# Date created: 2010-01-10
-# Whom: Gvozdikov Veniamin <g.veniamin@googlemail.com>
-#
+# Created by: Gvozdikov Veniamin <g.veniamin@googlemail.com>
# $FreeBSD$
-#
PORTNAME= qtresistors
PORTVERSION= 0.1
@@ -21,6 +17,7 @@ WRKSRC= ${WRKDIR}/qtResistors
PLIST_FILES= bin/${PORTNAME}
+NO_STAGE= yes
do-configure:
cd ${WRKSRC} && ${QMAKE} ${QMAKEFLAGS}
diff --git a/science/ruby-dcl/Makefile b/science/ruby-dcl/Makefile
index d68433288c1b..517ac355a7e0 100644
--- a/science/ruby-dcl/Makefile
+++ b/science/ruby-dcl/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: RubyDCL
-# Date created: 15 Febrary 2004
-# Whom: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
-#
+# Created by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
# $FreeBSD$
-#
PORTNAME= dcl
PORTVERSION= 1.7.0
@@ -36,6 +32,7 @@ EXAMPLESDIR= ${RUBY_MODEXAMPLESDIR}
PORTDOCS= ChangeLog README ToDo
PORTEXAMPLES= *
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "ia64"
diff --git a/science/ruby-gphys/Makefile b/science/ruby-gphys/Makefile
index 95a90e2bb051..60e3f9b2937e 100644
--- a/science/ruby-gphys/Makefile
+++ b/science/ruby-gphys/Makefile
@@ -1,4 +1,4 @@
-# Created by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
+# Created by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
# $FreeBSD$
PORTNAME= gphys
@@ -34,6 +34,7 @@ DOCSDIR= ${RUBY_MODDOCDIR}
PORTEXAMPLES= sample* test*
PORTDOCS= ChangeLog LICENSE.txt README TODO_ep_flux doc*
+NO_STAGE= yes
do-install:
cd ${WRKSRC} && ${MAKE} install
cd ${WRKSRC} && ${RUBY} install.rb
diff --git a/science/ruby-netcdf/Makefile b/science/ruby-netcdf/Makefile
index 3eac3fb35394..aa2a72f164f8 100644
--- a/science/ruby-netcdf/Makefile
+++ b/science/ruby-netcdf/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: RubyNetCDF
-# Date created: 11 June 2002
-# Whom: Akinori MUSHA aka knu <knu@idaemons.org>
-#
+# Created by: Akinori MUSHA aka knu <knu@idaemons.org>
# $FreeBSD$
-#
PORTNAME= netcdf
PORTVERSION= 0.6.6
@@ -27,6 +23,7 @@ USE_RUBY_EXTCONF= yes
DOCS= ChangeLog ToDo doc/*
+NO_STAGE= yes
post-install:
.if !defined(NOPORTDOCS)
${MKDIR} ${RUBY_MODEXAMPLESDIR}
diff --git a/science/rubygem-ai4r/Makefile b/science/rubygem-ai4r/Makefile
index 4f807d97edb9..2d9480a5f1ac 100644
--- a/science/rubygem-ai4r/Makefile
+++ b/science/rubygem-ai4r/Makefile
@@ -13,4 +13,5 @@ USE_RUBY= yes
USE_RUBYGEMS= yes
RUBYGEM_AUTOPLIST= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/silo/Makefile b/science/silo/Makefile
index 0fae73fd12aa..b98e8e925aac 100644
--- a/science/silo/Makefile
+++ b/science/silo/Makefile
@@ -26,6 +26,7 @@ GNU_CONFIGURE= yes
CONFIGURE_ARGS= --enable-shared --disable-static
USE_LDCONFIG= yes
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MFORTRAN}
diff --git a/science/simlib/Makefile b/science/simlib/Makefile
index 03cec7668053..7629892aa699 100644
--- a/science/simlib/Makefile
+++ b/science/simlib/Makefile
@@ -1,9 +1,5 @@
-# Ports collection makefile for: simlib
-# Whom: Pav Lucistnik <pav@FreeBSD.org>
-# Date created: 26 Nov 2004
-#
+# Created by: Pav Lucistnik <pav@FreeBSD.org>
# $FreeBSD$
-#
PORTNAME= simlib
PORTVERSION= 3.0.20081216
@@ -23,6 +19,7 @@ CXXFLAGS+= -fPIC
NOT_FOR_ARCHS= ia64 powerpc sparc64
NOT_FOR_ARCHS_REASON= contains not working ${ARCH}-dependent assembly code
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e 's|make|gmake|g' ${WRKSRC}/Makefile
@${REINPLACE_CMD} -e 's#%%PREFIX%%#${PREFIX}#g' \
diff --git a/science/step/Makefile b/science/step/Makefile
index 2a02f2859ec9..b785e133b903 100644
--- a/science/step/Makefile
+++ b/science/step/Makefile
@@ -23,6 +23,7 @@ USES= cmake:outsource
USE_QT4= opengl moc_build qmake_build rcc_build uic_build
USE_XZ= yes
+NO_STAGE= yes
pre-configure:
# Avoid building translations, should the user pass
# CURRENT_LANG to CMake.
diff --git a/science/svmlight/Makefile b/science/svmlight/Makefile
index 155d3589588e..85a4fa0d1119 100644
--- a/science/svmlight/Makefile
+++ b/science/svmlight/Makefile
@@ -1,9 +1,5 @@
-# New ports collection makefile for: svmlight
-# Date created: 2006-07-18
-# Whom: Gea-Suan Lin <gslin@gslin.org>
-#
+# Created by: Gea-Suan Lin <gslin@gslin.org>
# $FreeBSD$
-#
PORTNAME= svmlight
PORTVERSION= 6.02
@@ -26,6 +22,7 @@ NO_WRKSUBDIR= yes
USE_GMAKE= yes
USE_LDCONFIG= yes
+NO_STAGE= yes
do-install:
${MKDIR} ${PREFIX}/include/svmlight
${INSTALL_DATA} ${WRKSRC}/*.h ${PREFIX}/include/svmlight
diff --git a/science/szip/Makefile b/science/szip/Makefile
index 1cadabc31c78..f44932a462b4 100644
--- a/science/szip/Makefile
+++ b/science/szip/Makefile
@@ -26,6 +26,7 @@ PORTDOCS= Release_notes_2_0.pdf
OPTIONS_DEFINE= DOCS
+NO_STAGE= yes
.include <bsd.port.options.mk>
post-install:
diff --git a/science/udunits/Makefile b/science/udunits/Makefile
index f43cdefc6eae..e54cef975612 100644
--- a/science/udunits/Makefile
+++ b/science/udunits/Makefile
@@ -21,6 +21,7 @@ USE_LDCONFIG= yes
INFO= udunits2 udunits2lib udunits2prog
+NO_STAGE= yes
post-patch:
@${REINPLACE_CMD} -e '/install-data-hook$$/d' ${WRKSRC}/lib/Makefile.in
diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile
index 487df9a2d5d3..69d6b019ab31 100644
--- a/science/v_sim/Makefile
+++ b/science/v_sim/Makefile
@@ -29,6 +29,7 @@ LDFLAGS+= -L${LOCALBASE}/lib
USE_LDCONFIG= yes
INSTALLS_ICONS= yes
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MDOCS}
diff --git a/science/veusz/Makefile b/science/veusz/Makefile
index de4241e52a42..e78e437eea2b 100644
--- a/science/veusz/Makefile
+++ b/science/veusz/Makefile
@@ -20,4 +20,5 @@ USE_PYTHON= yes
USE_PYDISTUTILS= yes
INSTALLS_EGGINFO= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/vmd/Makefile b/science/vmd/Makefile
index 59c3beec42b5..3a64403fc9da 100644
--- a/science/vmd/Makefile
+++ b/science/vmd/Makefile
@@ -39,6 +39,7 @@ TACHYON_DIST= tachyon-0.99b2.tar.gz
#STRIDE_DIST= stride.tar.gz
STRIDE_DIST= Stride_src.tar.Z
+NO_STAGE= yes
.include <bsd.port.pre.mk>
.if ${ARCH} == "amd64"
diff --git a/science/voro++/Makefile b/science/voro++/Makefile
index f1b09131b20c..d27d36edb38e 100644
--- a/science/voro++/Makefile
+++ b/science/voro++/Makefile
@@ -15,6 +15,7 @@ USE_GMAKE= yes
MAN1= voro++.1
+NO_STAGE= yes
post-patch-script:
${REINPLACE_CMD} \
-e 's|CC=|CC?=|g' \
diff --git a/science/x11iraf/Makefile b/science/x11iraf/Makefile
index 0bbe8fca970a..68ea395ec1e1 100644
--- a/science/x11iraf/Makefile
+++ b/science/x11iraf/Makefile
@@ -1,8 +1,5 @@
-# New ports collection makefile for: x11iraf
-# Date created: 22 August 2004
-# Whom: David Syphers <dsyphers@u.washington.edu>
+# Created by: David Syphers <dsyphers@u.washington.edu>
# $FreeBSD$
-#
PORTNAME= x11iraf
PORTVERSION= 1.3.1
@@ -32,6 +29,7 @@ MAN1= obmsh.1 \
ximtool.1 \
xtapemon.1
+NO_STAGE= yes
do-install:
@${ECHO_MSG} "===> Installing binaries"
@${INSTALL_PROGRAM} ${BINS:S|^|${WRKDIR}/bin.freebsd/|} ${PREFIX}/bin/
diff --git a/science/xfce4-equake-plugin/Makefile b/science/xfce4-equake-plugin/Makefile
index 7537dc1169e9..f0017ab5301b 100644
--- a/science/xfce4-equake-plugin/Makefile
+++ b/science/xfce4-equake-plugin/Makefile
@@ -1,6 +1,5 @@
# Created by: Olivier Duchateau
# $FreeBSD$
-#
PORTNAME= xfce4-equake-plugin
PORTVERSION= 1.3.3
@@ -19,4 +18,5 @@ USE_XFCE= configenv libmenu libutil panel
USE_XORG= x11
INSTALLS_ICONS= yes
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/xmakemol/Makefile b/science/xmakemol/Makefile
index f937d825376e..f8544c64b5b6 100644
--- a/science/xmakemol/Makefile
+++ b/science/xmakemol/Makefile
@@ -21,4 +21,5 @@ PLIST_FILES= bin/xmake_anim.pl \
%%DATADIR%%/elements
PLIST_DIRS= %%DATADIR%%
+NO_STAGE= yes
.include <bsd.port.mk>
diff --git a/science/xmds/Makefile b/science/xmds/Makefile
index 6202dc560f1e..3b1627fb5314 100644
--- a/science/xmds/Makefile
+++ b/science/xmds/Makefile
@@ -17,6 +17,7 @@ FFTW3_DESC= Use fftw3 instead of fftw2
GNU_CONFIGURE= yes
+NO_STAGE= yes
.include <bsd.port.options.mk>
.if ${PORT_OPTIONS:MFFTW3}