11 files changed, 335 insertions, 0 deletions

diff --git a/science/Makefile b/science/Makefile
index d89d0d6e915b..711ce3a61bad 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -43,6 +43,7 @@
     SUBDIR += mayavi
     SUBDIR += mbdyn
     SUBDIR += mcstas
+    SUBDIR += minc
     SUBDIR += mmtk
     SUBDIR += mpb
     SUBDIR += mpqc
diff --git a/science/minc/Makefile b/science/minc/Makefile
new file mode 100644
index 000000000000..a9bc2faa5917
--- /dev/null
+++ b/science/minc/Makefile
@@ -0,0 +1,80 @@
+############################################################################
+# New ports collection Makefile for:   minc 1.x (Medical Imaging NetCDF)
+# Date created:        21 Dec 2005
+# Whom:                jbacon
+#
+# $FreeBSD$
+#
+
+############################################################################
+# http://www.bic.mni.mcgill.ca/software/minc/
+# is the ultimate source for MINC, and will always contain the latest
+# source release.  If this port is not up to date enough for you,
+# you can download the latest sources and build manually.  On FreeBSD,
+# you must configure with the environment variable LDFLAGS set to
+# ${LOCALBASE}/lib so that the configure script will find libnetcdf.
+# Of course, the netcdf port must be installed first.
+
+PORTNAME=	minc
+PORTVERSION=	1.4
+CATEGORIES=	science biology
+MASTER_SITES=	http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
+		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
+
+MAINTAINER=	bacon@smithers.neuro.mcw.edu
+COMMENT=	Medical Imaging NetCDF
+
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf
+
+INSTALLS_SHLIB=	yes
+
+USE_AUTOTOOLS=	libtool:15
+
+# Build parameters
+#WRKSRC=		${WRKDIR}/minc-${PORTVERSION}
+
+MAN1=	dcm2mnc.1 \
+	ecattominc.1 \
+	invert_raw_image.1 \
+	minc_modify_header.1 \
+	mincaverage.1 \
+	minccalc.1 \
+	mincconcat.1 \
+	minccopy.1 \
+	mincdiff.1 \
+	mincedit.1 \
+	mincexpand.1 \
+	mincextract.1 \
+	mincheader.1 \
+	mincinfo.1 \
+	minclookup.1 \
+	mincmakescalar.1 \
+	mincmakevector.1 \
+	mincmath.1 \
+	mincpik.1 \
+	mincresample.1 \
+	mincreshape.1 \
+	mincstats.1 \
+	minctoecat.1 \
+	minctoraw.1 \
+	mincview.1 \
+	mincwindow.1 \
+	mnc2nii.1 \
+	nii2mnc.1 \
+	rawtominc.1 \
+	transformtags.1 \
+	upet2mnc.1 \
+	voxeltoworld.1 \
+	xfmconcat.1 \
+	xfminvert.1
+MAN3=	ParseArgv.3
+
+CONFIGURE_ENV=	CPPFLAGS="-I${LOCALBASE}/include"	\
+		LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib"
+CONFIGURE_ARGS=	--enable-shared=yes --enable-static=yes
+CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
+
+post-install:
+	${CAT} ${PKGMESSAGE}
+
+.include <bsd.port.mk>
diff --git a/science/minc/distinfo b/science/minc/distinfo
new file mode 100644
index 000000000000..c73ee7c2269b
--- /dev/null
+++ b/science/minc/distinfo
@@ -0,0 +1,3 @@
+MD5 (minc-1.4.tar.gz) = 873a6deed8109f95d29a197bad9f6070
+SHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
+SIZE (minc-1.4.tar.gz) = 1213768
diff --git a/science/minc/pkg-descr b/science/minc/pkg-descr
new file mode 100644
index 000000000000..9e5380b9987a
--- /dev/null
+++ b/science/minc/pkg-descr
@@ -0,0 +1,10 @@
+MINC (Medical Imaging NetCDF) is a medical imaging data format and an 
+associated set of tools and libraries. MINC was created in 1993 by Peter 
+Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological 
+Institute. Many others have contributed to the design and implementation 
+MINC over the years.
+
+WWW: http://www.bic.mni.mcgill.ca/software/minc/
+
+Port maintainer: Jason W. Bacon
+		 bacon@smithers.neuro.mcw.edu
diff --git a/science/minc/pkg-message b/science/minc/pkg-message
new file mode 100644
index 000000000000..645690e94543
--- /dev/null
+++ b/science/minc/pkg-message
@@ -0,0 +1,8 @@
+=============================================================================
+For questions or comments regarding this port, please contact the
+port maintainer: bacon@smithers.neuro.mcw.edu
+
+For MINC usage, please visit the MINC WEB site at
+
+http://www.bic.mni.mcgill.ca/software/minc/
+=============================================================================
diff --git a/science/minc/pkg-plist b/science/minc/pkg-plist
new file mode 100644
index 000000000000..95cdcace1c14
--- /dev/null
+++ b/science/minc/pkg-plist
@@ -0,0 +1,66 @@
+bin/dcm2mnc
+bin/ecattominc
+bin/invert_raw_image
+bin/minc_modify_header
+bin/mincaverage
+bin/minccalc
+bin/mincconcat
+bin/minccopy
+bin/mincdiff
+bin/mincedit
+bin/mincexpand
+bin/mincextract
+bin/mincheader
+bin/minchistory
+bin/mincinfo
+bin/minclookup
+bin/mincmakescalar
+bin/mincmakevector
+bin/mincmath
+bin/mincpik
+bin/mincresample
+bin/mincreshape
+bin/mincstats
+bin/minctoecat
+bin/minctoraw
+bin/mincview
+bin/mincwindow
+bin/mnc2nii
+bin/nii2mnc
+bin/rawtominc
+bin/transformtags
+bin/upet2mnc
+bin/voxeltoworld
+bin/worldtovoxel
+bin/xfmconcat
+bin/xfminvert
+include/ParseArgv.h
+include/minc.h
+include/minc_simple.h
+include/nd_loop.h
+include/time_stamp.h
+include/volume_io.h
+include/volume_io/alloc.h
+include/volume_io/arrays.h
+include/volume_io/basic.h
+include/volume_io/def_math.h
+include/volume_io/files.h
+include/volume_io/geom_structs.h
+include/volume_io/geometry.h
+include/volume_io/internal_volume_io.h
+include/volume_io/multidim.h
+include/volume_io/progress.h
+include/volume_io/string_funcs.h
+include/volume_io/system_dependent.h
+include/volume_io/transforms.h
+include/volume_io/vol_io_prototypes.h
+include/volume_io/volume.h
+include/volume_io/volume_cache.h
+include/voxel_loop.h
+lib/libminc.a
+lib/libminc.so
+lib/libminc.so.1
+lib/libvolume_io.a
+lib/libvolume_io.so
+lib/libvolume_io.so.0
+@dirrm include/volume_io
diff --git a/science/minc2/Makefile b/science/minc2/Makefile
new file mode 100644
index 000000000000..a9bc2faa5917
--- /dev/null
+++ b/science/minc2/Makefile
@@ -0,0 +1,80 @@
+############################################################################
+# New ports collection Makefile for:   minc 1.x (Medical Imaging NetCDF)
+# Date created:        21 Dec 2005
+# Whom:                jbacon
+#
+# $FreeBSD$
+#
+
+############################################################################
+# http://www.bic.mni.mcgill.ca/software/minc/
+# is the ultimate source for MINC, and will always contain the latest
+# source release.  If this port is not up to date enough for you,
+# you can download the latest sources and build manually.  On FreeBSD,
+# you must configure with the environment variable LDFLAGS set to
+# ${LOCALBASE}/lib so that the configure script will find libnetcdf.
+# Of course, the netcdf port must be installed first.
+
+PORTNAME=	minc
+PORTVERSION=	1.4
+CATEGORIES=	science biology
+MASTER_SITES=	http://www.bic.mni.mcgill.ca/software/distribution/packages/ \
+		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/
+
+MAINTAINER=	bacon@smithers.neuro.mcw.edu
+COMMENT=	Medical Imaging NetCDF
+
+LIB_DEPENDS=	netcdf.1:${PORTSDIR}/science/netcdf
+
+INSTALLS_SHLIB=	yes
+
+USE_AUTOTOOLS=	libtool:15
+
+# Build parameters
+#WRKSRC=		${WRKDIR}/minc-${PORTVERSION}
+
+MAN1=	dcm2mnc.1 \
+	ecattominc.1 \
+	invert_raw_image.1 \
+	minc_modify_header.1 \
+	mincaverage.1 \
+	minccalc.1 \
+	mincconcat.1 \
+	minccopy.1 \
+	mincdiff.1 \
+	mincedit.1 \
+	mincexpand.1 \
+	mincextract.1 \
+	mincheader.1 \
+	mincinfo.1 \
+	minclookup.1 \
+	mincmakescalar.1 \
+	mincmakevector.1 \
+	mincmath.1 \
+	mincpik.1 \
+	mincresample.1 \
+	mincreshape.1 \
+	mincstats.1 \
+	minctoecat.1 \
+	minctoraw.1 \
+	mincview.1 \
+	mincwindow.1 \
+	mnc2nii.1 \
+	nii2mnc.1 \
+	rawtominc.1 \
+	transformtags.1 \
+	upet2mnc.1 \
+	voxeltoworld.1 \
+	xfmconcat.1 \
+	xfminvert.1
+MAN3=	ParseArgv.3
+
+CONFIGURE_ENV=	CPPFLAGS="-I${LOCALBASE}/include"	\
+		LDFLAGS="${LDFLAGS} -L${LOCALBASE}/lib"
+CONFIGURE_ARGS=	--enable-shared=yes --enable-static=yes
+CONFIGURE_TARGET=--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
+
+post-install:
+	${CAT} ${PKGMESSAGE}
+
+.include <bsd.port.mk>
diff --git a/science/minc2/distinfo b/science/minc2/distinfo
new file mode 100644
index 000000000000..c73ee7c2269b
--- /dev/null
+++ b/science/minc2/distinfo
@@ -0,0 +1,3 @@
+MD5 (minc-1.4.tar.gz) = 873a6deed8109f95d29a197bad9f6070
+SHA256 (minc-1.4.tar.gz) = a07c9523f232c823f38275bc8bb23011e70a29a0a45071dad0dec81317a75c4f
+SIZE (minc-1.4.tar.gz) = 1213768
diff --git a/science/minc2/pkg-descr b/science/minc2/pkg-descr
new file mode 100644
index 000000000000..9e5380b9987a
--- /dev/null
+++ b/science/minc2/pkg-descr
@@ -0,0 +1,10 @@
+MINC (Medical Imaging NetCDF) is a medical imaging data format and an 
+associated set of tools and libraries. MINC was created in 1993 by Peter 
+Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological 
+Institute. Many others have contributed to the design and implementation 
+MINC over the years.
+
+WWW: http://www.bic.mni.mcgill.ca/software/minc/
+
+Port maintainer: Jason W. Bacon
+		 bacon@smithers.neuro.mcw.edu
diff --git a/science/minc2/pkg-message b/science/minc2/pkg-message
new file mode 100644
index 000000000000..645690e94543
--- /dev/null
+++ b/science/minc2/pkg-message
@@ -0,0 +1,8 @@
+=============================================================================
+For questions or comments regarding this port, please contact the
+port maintainer: bacon@smithers.neuro.mcw.edu
+
+For MINC usage, please visit the MINC WEB site at
+
+http://www.bic.mni.mcgill.ca/software/minc/
+=============================================================================
diff --git a/science/minc2/pkg-plist b/science/minc2/pkg-plist
new file mode 100644
index 000000000000..95cdcace1c14
--- /dev/null
+++ b/science/minc2/pkg-plist
@@ -0,0 +1,66 @@
+bin/dcm2mnc
+bin/ecattominc
+bin/invert_raw_image
+bin/minc_modify_header
+bin/mincaverage
+bin/minccalc
+bin/mincconcat
+bin/minccopy
+bin/mincdiff
+bin/mincedit
+bin/mincexpand
+bin/mincextract
+bin/mincheader
+bin/minchistory
+bin/mincinfo
+bin/minclookup
+bin/mincmakescalar
+bin/mincmakevector
+bin/mincmath
+bin/mincpik
+bin/mincresample
+bin/mincreshape
+bin/mincstats
+bin/minctoecat
+bin/minctoraw
+bin/mincview
+bin/mincwindow
+bin/mnc2nii
+bin/nii2mnc
+bin/rawtominc
+bin/transformtags
+bin/upet2mnc
+bin/voxeltoworld
+bin/worldtovoxel
+bin/xfmconcat
+bin/xfminvert
+include/ParseArgv.h
+include/minc.h
+include/minc_simple.h
+include/nd_loop.h
+include/time_stamp.h
+include/volume_io.h
+include/volume_io/alloc.h
+include/volume_io/arrays.h
+include/volume_io/basic.h
+include/volume_io/def_math.h
+include/volume_io/files.h
+include/volume_io/geom_structs.h
+include/volume_io/geometry.h
+include/volume_io/internal_volume_io.h
+include/volume_io/multidim.h
+include/volume_io/progress.h
+include/volume_io/string_funcs.h
+include/volume_io/system_dependent.h
+include/volume_io/transforms.h
+include/volume_io/vol_io_prototypes.h
+include/volume_io/volume.h
+include/volume_io/volume_cache.h
+include/voxel_loop.h
+lib/libminc.a
+lib/libminc.so
+lib/libminc.so.1
+lib/libvolume_io.a
+lib/libvolume_io.so
+lib/libvolume_io.so.0
+@dirrm include/volume_io