release/4.7.0

author: cvs2svn <cvs2svn@FreeBSD.org> 2002-10-10 17:58:00 +0000
committer: cvs2svn <cvs2svn@FreeBSD.org> 2002-10-10 17:58:00 +0000
commit: 47ac56be82c72f83caff34ce4ac8f8e71bf8065a (patch)
tree: 9b024a0a3e5f7e9ea25f8a10c704c6fa17bdc4f1 /science
parent: a7b4667654401c6cff9093ae6ebd74c74d6776ac (diff)
77 files changed, 0 insertions, 1809 deletions
diff --git a/science/felt/Makefile b/science/felt/Makefile
deleted file mode 100644
index 49d441480375..000000000000
--- a/science/felt/Makefile
+++ /dev/null
@@ -1,48 +0,0 @@
-# New ports collection makefile for:	FElt
-# Date created:		19 October 1996
-# Whom:			Pedro Giffuni
-#
-# $FreeBSD$
-#
-
-PORTNAME=	felt
-PORTVERSION=	3.05
-CATEGORIES=	cad
-MASTER_SITES=	${MASTER_SITE_SOURCEFORGE} \
-		http://symphony.clarku.edu/atkinson/felt/Binaries/ \
-		ftp://ftp.isd.uni-stuttgart.de/pub/src/FEM/FElt/
-MASTER_SITE_SUBDIR=	felt
-EXTRACT_SUFX=	.src.tar.gz
-
-MAINTAINER=	ports@FreeBSD.org
-
-LIB_DEPENDS=	Xaw3d.${XAWVER}:${PORTSDIR}/x11-toolkits/Xaw3d
-
-WRKSRC=		${WRKDIR}/FElt-${PORTVERSION}
-GNU_CONFIGURE=	yes
-USE_X_PREFIX=	yes
-USE_REINPLACE=	yes
-
-MAN1=		burlap.1 corduroy.1 felt.1 patchwork.1 velvet.1 yardstick.1
-MAN3=		Drawing.3
-MAN4=		corduroy.4 felt.4
-
-post-patch:
-	@${REINPLACE_CMD} -e 's,<malloc.h>,<stdlib.h>, ; s,"malloc.h",<stdlib.h>,' \
-	${WRKSRC}/lib/Felt/parser.c \
-	${WRKSRC}/lib/Widgets/xwd.c ${WRKSRC}/lib/Matrix/data.c	\
-	${WRKSRC}/lib/Matrix/factor.c ${WRKSRC}/lib/Matrix/eigen.c \
-	${WRKSRC}/lib/Matrix/c_data.c ${WRKSRC}/lib/Matrix/c_factor.c \
-	${WRKSRC}/include/allocate.h ${WRKSRC}/src/Velvet/error.c \
-	${WRKSRC}/src/Burlap/allocate.h ${WRKSRC}/src/Burlap/interactive.c \
-	${WRKSRC}/src/Burlap/parser.c \
-	${WRKSRC}/src/Corduroy/parser.c	\
-	${WRKSRC}/src/Patchwork/util.c
-
-post-install:
-	${MKDIR} ${PREFIX}/share/examples/FElt
-	${CP} ${WRKSRC}/examples/* ${PREFIX}/share/examples/FElt
-	${MKDIR} ${PREFIX}/share/doc/FElt
-	${CP} ${WRKSRC}/*.html ${PREFIX}/share/doc/FElt
-
-.include <bsd.port.mk>
diff --git a/science/felt/distinfo b/science/felt/distinfo
deleted file mode 100644
index 4fd54b6a954f..000000000000
--- a/science/felt/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (felt-3.05.src.tar.gz) = 3cadb25d7039604b862a30df55bf49f8
diff --git a/science/felt/files/patch-aa b/science/felt/files/patch-aa
deleted file mode 100644
index dfc136434b61..000000000000
--- a/science/felt/files/patch-aa
+++ /dev/null
@@ -1,41 +0,0 @@
---- configure.orig	Mon May 29 23:29:15 1995
-+++ configure	Mon Apr 30 03:03:43 2001
-@@ -71,7 +71,6 @@
- 
- echo Configuring ...
- 
--which CC gcc
- which RANLIB ranlib
- which CAT cat
- which TRUE true
-@@ -136,7 +135,6 @@
- 
- # provide worst-case defaults
- 
--: ${CC:=cc}
- : ${RANLIB:=$TRUE}
- : ${READDIR:=/lib}
- : ${DEST}:=.}
-@@ -145,12 +143,11 @@
- : ${X11INC:=.}
- : ${X11LIB:=.}
- 
--CC=`basename $CC`
- RANLIB=`basename $RANLIB`
- READDIR=`dirname $READDIR`
- CONTRIBDIR=none
- 
--if [ $CC = gcc ]; then CCOPTS=-O3; else CCOPTS=-O; fi
-+CCOPTS=${CFLAGS}
- 
- 
- # defaults for known architectures that fail the above
-@@ -222,7 +219,7 @@
- CONTRIBFLAGS	= $CONTRIBFLAGS
- CPP		= $CPP
- DESTBIN		= $DEST/bin
--DESTLIB		= $DEST/lib/felt
-+DESTLIB		= $DEST/share/felt
- DESTMAN		= $DEST/man
- INSTALL		= sh \$(TOPDIR)/etc/install.sh -c
- LDOPTS		=
diff --git a/science/felt/files/patch-ab b/science/felt/files/patch-ab
deleted file mode 100644
index 59a8c9cf6685..000000000000
--- a/science/felt/files/patch-ab
+++ /dev/null
@@ -1,20 +0,0 @@
-diff -rc src/Velvet.orig/Velvet.ad src/Velvet/Velvet.ad
-*** src/Velvet.orig/Velvet.ad	Wed Dec 23 23:01:06 1998
---- src/Velvet/Velvet.ad	Wed Dec 23 23:01:34 1998
-***************
-*** 1046,1052 ****
-  
-  ! 3d specific defaults
-  
-! !*shapeStyle:					Rectangle
-! !*control*spacer.height:				43
-! !*control*MenuButton*height:			26
-! !*control*Command*height:			26
---- 1046,1052 ----
-  
-  ! 3d specific defaults
-  
-! *shapeStyle:					Rectangle
-! *control*spacer.height:				43
-! *control*MenuButton*height:			26
-! *control*Command*height:			26
diff --git a/science/felt/files/patch-ac b/science/felt/files/patch-ac
deleted file mode 100644
index c9361f62f8ee..000000000000
--- a/science/felt/files/patch-ac
+++ /dev/null
@@ -1,16 +0,0 @@
-*** src/Burlap/allocate.h.orig	Sat Jun 14 22:32:22 1997
---- src/Burlap/allocate.h	Sat Jun 14 22:35:28 1997
-***************
-*** 28,34 ****
---- 28,38 ----
-  
-  # ifndef _ALLOCATE_H
-  # define _ALLOCATE_H
-+ #ifdef __STDC__
-+ #include <stdlib.h>
-+ #else
-  # include <malloc.h>
-+ #endif
-  # include <string.h>
-  
-  # define New(type) \
diff --git a/science/felt/files/patch-ad b/science/felt/files/patch-ad
deleted file mode 100644
index 22525e8ca2d8..000000000000
--- a/science/felt/files/patch-ad
+++ /dev/null
@@ -1,15 +0,0 @@
---- include/allocate.h.orig	Fri Jan 10 20:11:30 1997
-+++ include/allocate.h	Fri Jan 10 20:10:54 1997
-@@ -25,7 +25,12 @@
- 
- # ifndef _ALLOCATE_H
- # define _ALLOCATE_H
-+
-+#ifdef __STDC__
-+#include <stdlib.h>
-+#else
- # include "malloc.h"
-+#endif
- 
- # define AllocNew(type) \
- 	(type *) malloc (sizeof (type))
diff --git a/science/felt/pkg-comment b/science/felt/pkg-comment
deleted file mode 100644
index beda7b174c25..000000000000
--- a/science/felt/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A system for Finite Element Analysis
diff --git a/science/felt/pkg-descr b/science/felt/pkg-descr
deleted file mode 100644
index 24d1ced3b194..000000000000
--- a/science/felt/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-FElt is a free system for introductory level finite element analysis in the 
-mechanical/structural/civil fields. In a command line environment, FElt 
-uses an intuitive, straightforward input syntax to describe problems. It 
-also includes a graphical user interface for workstations that allows the 
-user to set-up, solve and post-process the problem in a single CAD-like 
-environment. 
-
-WWW: http://felt.sourceforge.net/
-http://crunch.inf.bi.ruhr-uni-bochum.de/FAR/ (FElt Application Repository)
diff --git a/science/felt/pkg-plist b/science/felt/pkg-plist
deleted file mode 100644
index 054672281479..000000000000
--- a/science/felt/pkg-plist
+++ /dev/null
@@ -1,106 +0,0 @@
-bin/burlap
-bin/corduroy
-bin/felt
-bin/loom
-bin/patchwork
-bin/velvet
-bin/yardstick
-lib/X11/app-defaults/Velvet.ad
-share/doc/FElt/FAQ.html
-@dirrm share/doc/FElt
-share/examples/FElt/frame3.flt
-share/examples/FElt/beam3d_b.flt
-share/examples/FElt/bridge.flt
-share/examples/FElt/cube.flt
-share/examples/FElt/iso.flt
-share/examples/FElt/pstress.flt
-share/examples/FElt/pstress_a.flt
-share/examples/FElt/truss3d.flt
-share/examples/FElt/truss_d.flt
-share/examples/FElt/distrib.flt
-share/examples/FElt/distrib_a.flt
-share/examples/FElt/distrib_b.flt
-share/examples/FElt/frame.flt
-share/examples/FElt/htk_modal.flt
-share/examples/FElt/mixed_dist.flt
-share/examples/FElt/mixed.flt
-share/examples/FElt/pstress_dist.flt
-share/examples/FElt/truss.flt
-share/examples/FElt/truss_a.flt
-share/examples/FElt/beam.flt
-share/examples/FElt/beam3d_2d.flt
-share/examples/FElt/iso_a.flt
-share/examples/FElt/distrib_c.flt
-share/examples/FElt/README
-share/examples/FElt/iso_b.flt
-share/examples/FElt/iso_c.flt
-share/examples/FElt/iso_tri.flt
-share/examples/FElt/truss_trig.flt
-share/examples/FElt/wrench.flt
-share/examples/FElt/isoq_dist.flt
-share/examples/FElt/isoq_tri.flt
-share/examples/FElt/distrib_d.flt
-share/examples/FElt/beam3d_dist.flt
-share/examples/FElt/pstress_new.flt
-share/examples/FElt/mixed_dist.ans
-share/examples/FElt/displ.flt
-share/examples/FElt/beam3d_dist_a.flt
-share/examples/FElt/german.flt
-share/examples/FElt/errors.flt
-share/examples/FElt/distrib_e.flt
-share/examples/FElt/timoshenko.flt
-share/examples/FElt/timoshenko_a.flt
-share/examples/FElt/timoshenko_c.flt
-share/examples/FElt/global.flt
-share/examples/FElt/global_a.flt
-share/examples/FElt/hinged.flt
-share/examples/FElt/tower.flt
-share/examples/FElt/global3d_a.flt
-share/examples/FElt/global3d.flt
-share/examples/FElt/global3d_b.flt
-share/examples/FElt/bicycle_boys.flt
-share/examples/FElt/bicycle_girls.flt
-share/examples/FElt/dynamic.flt
-share/examples/FElt/dynframe.flt
-share/examples/FElt/golden.flt
-share/examples/FElt/bridge_dyn.flt
-share/examples/FElt/htk.flt
-share/examples/FElt/truss_canvas.flt
-share/examples/FElt/brick.flt
-share/examples/FElt/beam_ss.flt
-share/examples/FElt/dist_mult.flt
-share/examples/FElt/modal.flt
-share/examples/FElt/modal_8.flt
-share/examples/FElt/modal_sample.flt
-share/examples/FElt/ctg.flt
-share/examples/FElt/ctg_simple.flt
-share/examples/FElt/heat.flt
-share/examples/FElt/rod.flt
-share/examples/FElt/beamspec.flt
-share/examples/FElt/heat_transient.flt
-share/examples/FElt/rod_transient.flt
-share/examples/FElt/dynspect.flt
-share/examples/FElt/spring_modal.flt
-share/examples/FElt/spring2.flt
-share/examples/FElt/truss_spec.flt
-share/examples/FElt/boxtruss.flt
-share/examples/FElt/bridge_spec.flt
-share/examples/FElt/loadcase1.flt
-share/examples/FElt/axisymm.flt
-share/examples/FElt/beam_lc.flt
-share/examples/FElt/beam_nl.flt
-share/examples/FElt/beam_range.flt
-share/examples/FElt/flexure.flt
-share/examples/FElt/modal_test.flt
-share/examples/FElt/nl_range.flt
-share/examples/FElt/truss_nl.flt
-share/examples/FElt/beam3d_a.flt
-@dirrm share/examples/FElt
-share/felt/beam.defaults
-share/felt/material.defaults
-share/felt/truss.defaults
-share/felt/german.trn
-share/felt/german_new.trn
-share/felt/spanish.trn
-@dirrm share/felt
-
diff --git a/science/hdf/Makefile b/science/hdf/Makefile
deleted file mode 100644
index d2be7566329f..000000000000
--- a/science/hdf/Makefile
+++ /dev/null
@@ -1,37 +0,0 @@
-# New ports collection makefile for:	HDF_lib
-# Date created:		17 November 1996
-# Whom:			mi
-#
-# $FreeBSD$
-#
-
-PORTNAME=	hdf
-PORTVERSION=	4.1r5
-CATEGORIES=	graphics
-MASTER_SITES=	ftp://ftp.ncsa.uiuc.edu/HDF/HDF/HDF${PORTVERSION}/tar/
-DISTNAME=	HDF${PORTVERSION}
-
-MAINTAINER=	mi@aldan.algebra.com
-
-LIB_DEPENDS=	jpeg.9:${PORTSDIR}/graphics/jpeg
-
-MAN1=		hdf.1 hdfunpac.1 ncdump.1 ncgen.1
-MAN3=		gr_chunk.3
-MANCOMPRESSED=	maybe
-
-MAKE_ARGS=	PREFIX="${PREFIX}" -j 2
-
-post-patch:
-	${RM} -rf ${WRKSRC}/hdf/jpeg
-	${RM} -rf ${WRKSRC}/hdf/zlib
-
-do-configure:
-	${CP} -rp ${FILESDIR}/Makefile ${FILESDIR}/hdf \
-		${FILESDIR}/mfhdf ${FILESDIR}/man ${WRKSRC}
-	${LN} -s config/netcdf-fbsd.h ${WRKSRC}/mfhdf/libsrc/netcdf.h
-	${LN} -s netcdf-fbsd.inc ${WRKSRC}/mfhdf/fortran/config/netcdf.inc
-
-test: build
-	cd ${WRKSRC}; ${MAKE} test
-
-.include <bsd.port.mk>
diff --git a/science/hdf/distinfo b/science/hdf/distinfo
deleted file mode 100644
index 3ce910a4ad52..000000000000
--- a/science/hdf/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (HDF4.1r5.tar.gz) = f90de772dac93195def4a585da176db2
diff --git a/science/hdf/files/Makefile b/science/hdf/files/Makefile
deleted file mode 100644
index 0dc23c19cf80..000000000000
--- a/science/hdf/files/Makefile
+++ /dev/null
@@ -1,16 +0,0 @@
-# $FreeBSD$
-
-SUBDIR	 = hdf mfhdf man
-#PREFIX	?= /usr/local
-LIBDIR	?= ${PREFIX}/lib
-BINDIR	?= ${PREFIX}/bin
-
-.MAKEFLAGS: PREFIX=${PREFIX} LIBDIR=${LIBDIR} BINDIR=${BINDIR}
-
-test: all
-	# testing in hdf
-	@cd hdf && ${MAKE} hdf-test
-	# testing in mfhdf
-	@cd mfhdf && ${MAKE} test
-
-.include <bsd.subdir.mk>
diff --git a/science/hdf/files/hdf/Makefile b/science/hdf/files/hdf/Makefile
deleted file mode 100644
index 1f9663c03246..000000000000
--- a/science/hdf/files/hdf/Makefile
+++ /dev/null
@@ -1,9 +0,0 @@
-# $FreeBSD$
-
-SUBDIR	 = src util test
-
-hdf-test: all
-	cd util && ${MAKE} test
-	cd test && ${MAKE} test
-
-.include <bsd.subdir.mk>
diff --git a/science/hdf/files/hdf/src/Makefile b/science/hdf/files/hdf/src/Makefile
deleted file mode 100644
index d486e4956b82..000000000000
--- a/science/hdf/files/hdf/src/Makefile
+++ /dev/null
@@ -1,54 +0,0 @@
-# $FreeBSD$
-
-LIB=df
-
-LIBDIR=${PREFIX}/lib
-# comment out the line below to build the profile libs
-NOPROFILE=yes
-
-SHLIB_MAJOR=1
-SHLIB_MINOR=0
-
-SRCS=atom.c  bitvect.c  cdeflate.c  cnbit.c  cnone.c  crle.c  cskphuff.c \
-	df24.c  df24f.c dfan.c  dfanf.c dfcomp.c  dfconv.c dff.c  dfgr.c \
-	dfgroup.c  dfimcomp.c  dfjpeg.c  dfkconv.c  dfkcray.c  dfkfuji.c \
-	dfknat.c dfkswap.c dfkvms.c dfp.c  dfpf.c dfr8.c dfr8f.c dfrle.c \
-	dfsd.c dfsdf.c dfstubs.c dfufp2i.c dfunjpeg.c dfutil.c dfutilf.c \
-	dir_mac.c  dynarray.c   glist.c  hbitio.c   hblocks.c  hbuffer.c \
-	hchunks.c hcomp.c hcompri.c  hdfalloc.c herr.c herrf.c hextelt.c \
-	hfile.c hfiledd.c hfilef.c hkit.c linklist.c mcache.c \
-	mfan.c mfanf.c  mfgr.c mfgrf.c mstdio.c tbbt.c  vattr.c vattrf.c \
-	vconv.c  vg.c vgf.c  vgp.c  vhi.c vio.c  vparse.c vrw.c  vsfld.c \
-	df24ff.f  dfanff.f dfff.f  dfpff.f dfr8ff.f  dfsdff.f dfufp2if.f \
-	hfileff.f mfgrff.f vattrff.f vgff.f
-
-CFLAGS	+= -I${PREFIX}/include
-FFLAGS	+= ${CFLAGS}
-
-.if !defined(OSVERSION)
-.if exists(/sbin/sysctl)
-OSVERSION!=	/sbin/sysctl -n kern.osreldate
-.else
-OSVERSION!=	/usr/sbin/sysctl -n kern.osreldate
-.endif
-.endif
-
-.if ${OSVERSION} >= 400004
-LDADD	+= -L${PREFIX}/lib -ljpeg -lg2c -lz -lm
-.else
-LDADD	+= -L${PREFIX}/lib -ljpeg -lf2c -lz
-.endif
-
-afterinstall:
-	install -c -o root -g wheel -m 444 \
-		atom.h  bitvect.h  cdeflate.h   cnbit.h  cnone.h  crle.h \
-		cskphuff.h df.h dfan.h  dfconvrt.h dfgr.h dfi.h dfivms.h \
-		dfrig.h dfsd.h dfstubs.h  dfufp2i.h dir_mac.h dynarray.h \
-		glist.h  hbitio.h  hchunks.h  hcomp.h  hcompi.h  hconv.h \
-		hdf.h hdfi.h  herr.h hfile.h hkit.h  hlimits.h hntdefs.h \
-		hproto.h hqueue.h htags.h linklist.h maldebug.h mcache.h \
-		mfan.h mfgr.h mstdio.h sys_dir_mac.h tbbt.h trace.h \
-		vattr.h vg.h vgint.h hdf.inc dffunc.inc \
-			${PREFIX}/include
-
-.include <bsd.lib.mk>
diff --git a/science/hdf/files/hdf/test/Makefile b/science/hdf/files/hdf/test/Makefile
deleted file mode 100644
index 3a3c8ca98524..000000000000
--- a/science/hdf/files/hdf/test/Makefile
+++ /dev/null
@@ -1,68 +0,0 @@
-# $FreeBSD$
-
-CSRCS= 	rig.c sdstr.c blocks.c an.c anfile.c extelt.c file.c file1.c vers.c \
-	sdmms.c sdnmms.c slab.c litend.c tvset.c comp.c bitio.c tree.c macros.c \
-	conv.c nbit.c man.c mgr.c testhdf.c tbv.c tvsfpack.c chunks.c tvattr.c \
-    buffer.c
-
-COBJS=	${CSRCS:S/.c/.o/g}
-
-FSRCS= fortest.c fortestF.f forsupff.f forsupf.c \
-	manf.f mgrf.f slabwf.f t24f.f tanf.f tanfilef.f tpf.f tr8f.f \
-	tsdmmsf.f tsdnmmsf.f tsdnntf.f tsdntf.f tsdstrf.f tstubsf.f \
-        tvsetf.f, tvattrf.f
-
-FOBJS = fortestF.o forsupff.o forsupf.o \
-	manf.o mgrf.o slabwf.o t24f.o tanf.o tanfilef.o tpf.o tr8f.o \
-	tsdmmsf.o tsdnmmsf.o tsdnntf.o tsdntf.o tsdstrf.o tstubsf.o  \
-        tvsetf.o tvattrf.o
-
-#CFORSUPSRCS = forsupf.c
-
-HDFLIB	 = ${.CURDIR}/../src
-CFLAGS	+= -I${HDFLIB}
-FFLAGS	+= ${CFLAGS} -Nn802 -Nx400
-
-FTESTS = fortest fortestF
-
-all: testhdf $(FTESTS) gentest
-
-#CFORSUPOBJS = forsupf.o
-
-TESTF = fortest.o
-
-# directory used by extelt test.
-TESTDIR = testdir
-
-$(FOBJS): fortest.inc
-
-test: atest-hdf
-
-atest-hdf: testhdf $(FTESTS)
-	-rm -f *.hdf 
-	env LD_LIBRARY_PATH=${.CURDIR}/../src ./testhdf
-	-rm -f *.hdf 
-	env LD_LIBRARY_PATH=${.CURDIR}/../src ./fortest
-
-testhdf: $(COBJS) $(HDFLIB)/libdf.so
-	$(CC) -o testhdf $(COBJS) $(HDFLIB)/libdf.so -lm
-	test -d $(TESTDIR) || mkdir $(TESTDIR)
-
-fortestF: $(FOBJS) $(HDFLIB)/libdf.so
-	$(FC) $(FFLAGS) -o $@ $(FOBJS) $(HDFLIB)/libdf.so -lm
-
-fortest: $(HDFLIB)/libdf.so fortest.c $(CHDRS)
-	$(CC) $(CFLAGS) -o fortest fortest.c $(HDFLIB)/libdf.so -lm
-
-gentest: gentest.c $(HDFLIB)/libdf.so
-	$(CC) $(CFLAGS) gentest.c -o gentest $(HDFLIB)/libdf.so -lm
-
-clean: 
-	-rm -f $(COBJS) testhdf $(FOBJS) $(FTESTS) \
-	core *.hdf ptesthdf qtesthdf gentest *.o fortest.arg $(TESTDIR)/* \
-	.depend
-
-depend: 
-	mkdep ${CFLAGS} ${CSRCS}
-
-install:
diff --git a/science/hdf/files/hdf/util/Makefile b/science/hdf/files/hdf/util/Makefile
deleted file mode 100644
index 6d4ccae200d4..000000000000
--- a/science/hdf/files/hdf/util/Makefile
+++ /dev/null
@@ -1,30 +0,0 @@
-# $FreeBSD$
-
-UTILS	 = hdf24to8 hdfcomp hdfls hdfpack hdftopal hdftor8 paltohdf \
-        r8tohdf ristosds  vmake vshow hdf8to24 hdf2jpeg jpeg2hdf fp2hdf \
-	hdfunpac vcompat
-
-all: ${UTILS} hdfed
-
-HEOBJ = he_main.o he_cntrl.o he_disp.o he_file.o
-
-#CFLAGS	+= -I${PREFIX}/include -I${.CURDIR}/../src/
-CFLAGS	+=  -I${.CURDIR}/../src/
-#LDFLAGS	+= -L${PREFIX}/lib -ljpeg -L${.CURDIR}/../src/ -ldf -lz
-LDFLAGS	+= -L${.CURDIR}/../src/ -ldf
-
-hdfed: he.h he_proto.h $(HEOBJ)
-	$(CC) $(HEOBJ) $(LDFLAGS) -o hdfed
-
-test: all fptest
-	env LD_LIBRARY_PATH=${.CURDIR}/../src ./testutil.sh
-
-clean:
-	-rm -f *.o $(UTILS) hdfed fptest
-	-rm -f o* ctx* cb* fptestf .depend
-
-depend:
-	mkdep ${CFLAGS} ${UTILS:S/$/.c/g} ${HEOBJ:S/.o/.c/g}
-
-install: all
-	install -c -s -o root -g wheel -m 555 ${UTILS} hdfed ${BINDIR}
diff --git a/science/hdf/files/man/Makefile b/science/hdf/files/man/Makefile
deleted file mode 100644
index 6c63417f56be..000000000000
--- a/science/hdf/files/man/Makefile
+++ /dev/null
@@ -1,17 +0,0 @@
-# $FreeBSD$
-
-MANDIR	=	${PREFIX}/man/man
-
-MAN1	=	hdf.1 hdfunpac.1
-MAN3	=	gr_chunk.3
-
-.include <bsd.prog.mk>
-
-install: all-man maninstall
-
-clean:
-	-rm -f *.gz
-
-all: all-man
-
-depend:
diff --git a/science/hdf/files/mfhdf/Makefile b/science/hdf/files/mfhdf/Makefile
deleted file mode 100644
index 202766e54f67..000000000000
--- a/science/hdf/files/mfhdf/Makefile
+++ /dev/null
@@ -1,13 +0,0 @@
-# $FreeBSD$
-
-SUBDIR		= fortran libsrc ncgen ncdump nctest dumper
-
-.include <bsd.subdir.mk>
-
-test: all
-	@for d in ${SUBDIR} ; do \
-		echo "===> testing in $$d"; \
-		cd $$d; \
-		${MAKE} test; \
-		cd ..; \
-	done
diff --git a/science/hdf/files/mfhdf/dumper/Makefile b/science/hdf/files/mfhdf/dumper/Makefile
deleted file mode 100644
index 1bd8b3dfa744..000000000000
--- a/science/hdf/files/mfhdf/dumper/Makefile
+++ /dev/null
@@ -1,13 +0,0 @@
-# $FreeBSD$
-
-PROG		 = hdp
-NOMAN		 = 1
-LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
-CFLAGS		+= -I${.CURDIR}/../libsrc -I${.CURDIR}/../../hdf/src
-
-SRCS		=  hdp.c hdp_list.c hdp_sds.c hdp_util.c hdp_vd.c hdp_vg.c hdp_rig.c show.c hdp_dump.c hdp_gr.c
-
-.include <bsd.prog.mk>
-
-test: ${PROG}
-	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src sh testhdp.sh
diff --git a/science/hdf/files/mfhdf/fortran/Makefile b/science/hdf/files/mfhdf/fortran/Makefile
deleted file mode 100644
index 03571382ccc3..000000000000
--- a/science/hdf/files/mfhdf/fortran/Makefile
+++ /dev/null
@@ -1,42 +0,0 @@
-# $FreeBSD$
-
-.PATH:	${.CURDIR} ${.CURDIR}/config
-
-all:
-
-NOMAN	 =	1
-
-FFLAGS	+=	${CFLAGS} -DNDEBUG -Nn802 -Nx400
-
-LDFLAGS	+=	-L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
-
-afterinstall:
-	install -c -o root -g wheel -m 444 config/netcdf-fbsd.inc \
-		${PREFIX}/include/netcdf.inc
-
-.include <bsd.prog.mk>
-
-ENVIR	 =	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src
-
-CLEANFILES+=	hdftest hdftest.o ftest ftest-fbsd.o
-
-config/netcdf.inc:
-	ln -s netcdf-fbsd.inc config/netcdf.inc
-
-ftest:	ftest-fbsd.f config/netcdf.inc
-	${MAKE} PROG=$@ SRCS=ftest-fbsd.f $@
-
-hdftest: hdftest.f
-	${MAKE} PROG=$@ SRCS=hdftest.f $@
-
-test: ftest hdftest
-	mkdir -p testdir
-	# ================================
-	#  netCDF Fortran interface tests
-	# ================================
-	${ENVIR} ./ftest
-	${ENVIR} ./hdftest > hdfout.new
-	@diff -Bb hdfout.new hdftst.sav && \
-		echo "*** HDF-SD Fortran interface tests passed ***" || \
-		(echo "*** HDF-SD Fortran interface tests failed ***"; \
-		echo "The above differences are OK if small")
diff --git a/science/hdf/files/mfhdf/libsrc/Makefile b/science/hdf/files/mfhdf/libsrc/Makefile
deleted file mode 100644
index 6b1c2137bc76..000000000000
--- a/science/hdf/files/mfhdf/libsrc/Makefile
+++ /dev/null
@@ -1,43 +0,0 @@
-# $FreeBSD$
-
-.PATH:  ${.CURDIR} ${.CURDIR}/../fortran/config ${.CURDIR}/../fortran
-
-SRCS		= array.c attr.c cdf.c dim.c file.c iarray.c error.c \
-		  globdef.c putget.c putgetg.c sharray.c string.c var.c \
-		  hdfsds.c mfsd.c nssdc.c xdrposix.c \
-		  jackets-fbsd.c mfsdf.c mfsdff.f
-
-LIB		= mfhdf
-SHLIB_MAJOR	= 2
-SHLIB_MINOR	= 3
-
-LIBDIR		= ${PREFIX}/lib
-
-# comment out the line below to build the profile libs
-NOPROFILE=yes
-
-CFLAGS	+=	-DNDEBUG -DHDF -I${.CURDIR}/../../hdf/src -I${.CURDIR}
-.if ${MACHINE_ARCH} == "i386"
-CFLAGS	+=	-DSWAP
-.endif
-
-LDADD	+=	-L${.CURDIR}/../../hdf/src -ldf
-LDFLAGS	+=	-L. ${LDADD}
-
-afterinstall:
-	install -c -o root -g wheel -m 444 hdf2netcdf.h local_nc.h \
-		mfhdf.h netcdf.h ${PREFIX}/include
-
-.include <bsd.lib.mk>
-
-test: ${SHLIB_NAME} cdftest hdftest
-	env LD_LIBRARY_PATH=${.CURDIR}:${.CURDIR}/../../hdf/src ./cdftest > cdfout.new
-	@diff cdfout.new testout.sav && \
-		echo "*** netCDF passes formatted test ***" || \
-                (echo "*** netCDF fails formatted test ***" ; \
-                echo "The above differences are OK if small")
-	env LD_LIBRARY_PATH=${.CURDIR}:${.CURDIR}/../../hdf/src ./hdftest > hdfout.new
-	@diff hdfout.new hdfout.sav && \
-		echo "*** HDF passes formatted test ***" || \
-                (echo "*** HDF fails formatted test ***" ; \
-                echo "The above differences are OK if small")
diff --git a/science/hdf/files/mfhdf/ncdump/Makefile b/science/hdf/files/mfhdf/ncdump/Makefile
deleted file mode 100644
index 727b1de60b32..000000000000
--- a/science/hdf/files/mfhdf/ncdump/Makefile
+++ /dev/null
@@ -1,22 +0,0 @@
-# $FreeBSD$
-
-PROG		 = ncdump
-MANDIR		 = ${PREFIX}/man/man
-
-LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
-CFLAGS		+= -I${.CURDIR}/../libsrc
-SRCS		=  ncdump.c vardata.c dumplib.c
-
-.include <bsd.prog.mk>
-
-ENVIR		= env LD_LIBRARY_PATH=${.CURDIR}/../../hdf/src:${.CURDIR}/../libsrc
-NCGEN		= ${.CURDIR}/../ncgen/ncgen
-
-test:		$(PROG) test0.cdl
-	${ENVIR} $(NCGEN) -o test0.nc -n test0.cdl
-	${ENVIR} ./$(PROG) test0.nc > test1.cdl
-	${ENVIR} $(NCGEN) -o test1.nc -n test1.cdl
-	${ENVIR} ./$(PROG) -n test0 test1.nc > test2.cdl
-	@cmp test1.cdl test2.cdl && \
-	    echo "*** $(PROGRAM) test successful ***" ; \
-	    rm test1.cdl test1.nc test2.cdl
diff --git a/science/hdf/files/mfhdf/ncgen/Makefile b/science/hdf/files/mfhdf/ncgen/Makefile
deleted file mode 100644
index d954137cffa8..000000000000
--- a/science/hdf/files/mfhdf/ncgen/Makefile
+++ /dev/null
@@ -1,72 +0,0 @@
-# $FreeBSD$
-
-PROG		 = ncgen
-MANDIR		 = ${PREFIX}/man/man
-LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
-CFLAGS		+= -I${.CURDIR}/../libsrc -I${.CURDIR}/../../hdf/src -DNDEBUG
-SRCS		 = main.c generate.c load.c ncgentab.c escapes.c \
-		  getfill.c init.c close.c genlib.c
-
-ENVIR		 = env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src
-NCDUMP		 = ${.CURDIR}/../ncdump/ncdump
-
-test:           $(PROG) test0.cdl btest ctest ftest
-
-ncgenyy.c: ncgen.l
-	${LEX} ${LFLAGS} ncgen.l
-	mv lex.yy.c ncgenyy.c
-	
-ncgentab.c: ncgenyy.c ncgen.y
-	${YACC} ${YFLAGS} ncgen.y
-	mv y.tab.c ncgentab.c
-	mv y.tab.h ncgentab.h
-
-.include <bsd.prog.mk>
-
-#
-# test "-b" option of ncgen
-#
-btest:		$(PROG) test0.cdl test1.cdl
-	${ENVIR} ./$(PROG) -b test1.cdl
-	${ENVIR} $(NCDUMP) test1.nc > test2.cdl
-	@diff test1.cdl test2.cdl && \
-	    echo "*** $(PROG) -b test successful ***"
-
-#
-# test "-c" option of ncgen
-#
-ctest:		test1.cdl ctest0
-	${ENVIR} ./ctest0		# tests `-c' option, creates ctest0.nc
-	${ENVIR} $(NCDUMP) -n test1 ctest0.nc > ctest1.cdl
-	@diff test1.cdl ctest1.cdl && \
-	    echo "*** $(PROG) -c test successful ***"
-
-ctest0:		ncgen test0.cdl
-	${ENVIR} ./$(PROG) -c -o ctest0.nc test0.cdl > test0.c
-	$(CC) $(CFLAGS) -o $@ test0.c ${LDFLAGS}
-
-#
-# test "-f" option of ncgen
-#
-ftest:	test1.cdl ftest0
-	${ENVIR} ./ftest0
-	${ENVIR} $(NCDUMP) -n test1 ftest0.nc > ftest1.cdl
-	@if diff test1.cdl ftest1.cdl; then \
-		echo "*** ncgen -f test successful ***"; \
-	else \
-		echo "*** ncgen -f test failed " \
-		    "(but roundoff differences are OK) ***"; \
-	fi
-
-ftest0:	$(PROG) test0.cdl netcdf.inc
-	${ENVIR} ./$(PROG) -f -o ftest0.nc test0.cdl > test0.f; \
-	$(FC) $(FFLAGS) ${CFLAGS} -o $@ test0.f ${LDFLAGS}
-
-test1.cdl:	test0.nc
-	${ENVIR} $(NCDUMP) -n test1 test0.nc > $@
-
-test0.nc:	$(PROG) test0.cdl
-	${ENVIR} ./$(PROG) -b -o test0.nc test0.cdl
-
-netcdf.inc:
-	ln -s ../fortran/config/netcdf-fbsd.inc $@
diff --git a/science/hdf/files/mfhdf/nctest/Makefile b/science/hdf/files/mfhdf/nctest/Makefile
deleted file mode 100644
index 722d3524a482..000000000000
--- a/science/hdf/files/mfhdf/nctest/Makefile
+++ /dev/null
@@ -1,19 +0,0 @@
-# $FreeBSD$
-
-PROG		 = nctest
-NOMAN		 = 1
-CFLAGS		+= -I${.CURDIR}/../libsrc
-LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
-SRCS		= varget.c vargetg.c varput.c varputg.c vardef.c vartests.c \
-		  vputget.c vputgetg.c driver.c cdftests.c dimtests.c rec.c \
-		  atttests.c misctest.c add.c error.c emalloc.c val.c slabs.c
-
-install:
-
-.include <bsd.prog.mk>
-
-test:		$(PROG)
-	@ echo "==========================="
-	@ echo "netCDF C interface tests"
-	@ echo "==========================="
-	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src ./$(PROG)
diff --git a/science/hdf/pkg-comment b/science/hdf/pkg-comment
deleted file mode 100644
index 2f8affd569f0..000000000000
--- a/science/hdf/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Hierarchical Data Format library (from NCSA)
diff --git a/science/hdf/pkg-descr b/science/hdf/pkg-descr
deleted file mode 100644
index 222d6e8bf354..000000000000
--- a/science/hdf/pkg-descr
+++ /dev/null
@@ -1,22 +0,0 @@
-From HDF's manpage:
-
-       hdf - Hierarchical Data Format library
-
-Description:
-       HDF  is	a  multi-object  file format that facilitates the
-       transfer of  various  types  of	scientific  data  between
-       machines  and  operating systems.  Machines currently sup-
-       ported  include	the  Cray,  Convex,  HP,  Vax,	Sun,  IBM
-       RS/6000,  Silicon  Graphics, Macintosh, and IBM PC comput-
-       ers.  HDF allows self-definitions of data content and easy
-       extensibility  for  future  enhancements  or compatibility
-       with other standard formats. HDF includes  Fortran  and	C
-       calling	interfaces,and	utilities to prepare raw image of
-       data files or for use with other NCSA software.	 The  HDF
-       library	contains  interfaces  for  storing and retrieving
-       compressed or uncompressed 8-bit and 24-bit raster  images
-       with   palettes,  n-Dimensional	scientific  datasets  and
-       binary tables. An interface is also included  that  allows
-       arbitray grouping of other HDF objects.
-
-WWW: http://hdf.ncsa.uiuc.edu/
diff --git a/science/hdf/pkg-plist b/science/hdf/pkg-plist
deleted file mode 100644
index a0ca0c5f4e40..000000000000
--- a/science/hdf/pkg-plist
+++ /dev/null
@@ -1,81 +0,0 @@
-bin/fp2hdf
-bin/hdf24to8
-bin/hdf2jpeg
-bin/hdf8to24
-bin/hdfcomp
-bin/hdfed
-bin/hdfls
-bin/hdfpack
-bin/hdftopal
-bin/hdftor8
-bin/hdfunpac
-bin/hdp
-bin/jpeg2hdf
-bin/ncdump
-bin/ncgen
-bin/paltohdf
-bin/r8tohdf
-bin/ristosds
-bin/vcompat
-bin/vmake
-bin/vshow
-include/atom.h
-include/bitvect.h
-include/cdeflate.h
-include/cnbit.h
-include/cnone.h
-include/crle.h
-include/cskphuff.h
-include/df.h
-include/dfan.h
-include/dfconvrt.h
-include/dffunc.inc
-include/dfgr.h
-include/dfi.h
-include/dfivms.h
-include/dfrig.h
-include/dfsd.h
-include/dfstubs.h
-include/dfufp2i.h
-include/dir_mac.h
-include/dynarray.h
-include/glist.h
-include/hbitio.h
-include/hchunks.h
-include/hcomp.h
-include/hcompi.h
-include/hconv.h
-include/hdf.h
-include/hdf.inc
-include/hdf2netcdf.h
-include/hdfi.h
-include/herr.h
-include/hfile.h
-include/hkit.h
-include/hlimits.h
-include/hntdefs.h
-include/hproto.h
-include/hqueue.h
-include/htags.h
-include/linklist.h
-include/local_nc.h
-include/maldebug.h
-include/mcache.h
-include/mfan.h
-include/mfgr.h
-include/mfhdf.h
-include/mstdio.h
-include/netcdf.h
-include/netcdf.inc
-include/sys_dir_mac.h
-include/tbbt.h
-include/trace.h
-include/vattr.h
-include/vg.h
-include/vgint.h
-lib/libdf.a
-lib/libdf.so
-lib/libdf.so.1
-lib/libmfhdf.a
-lib/libmfhdf.so
-lib/libmfhdf.so.2
diff --git a/science/hdf/scripts/post-patch b/science/hdf/scripts/post-patch
deleted file mode 100644
index abb1fc2ea1fb..000000000000
--- a/science/hdf/scripts/post-patch
+++ /dev/null
@@ -1,83 +0,0 @@
-#!/bin/sh
-
-for f in `find ${WRKSRC} -type f -name Makefile.in -print | xargs grep -l "^CFLAGS = -ansi -O"`
-do
-patch -p << END_OF_PATCH
---- $f.orig
-+++ $f
-@@ -72,1 +72,1 @@
--CFLAGS = -ansi -O
-+#CFLAGS = -ansi -O
-END_OF_PATCH
-done
-for f in `find ${WRKSRC} -type f -name Makefile.in -print | xargs grep -l "^ZLIB_LIB = "`
-do
-patch -p << END_OF_PATCH
---- $f.orig
-+++ $f
-@@ -72,1 +72,1 @@
--ZLIB_LIB = \$(TOP_SRCDIR)/hdf/zlib/libz.a
-+#ZLIB_LIB = \$(TOP_SRCDIR)/hdf/zlib/libz.a
-END_OF_PATCH
-done
-for f in `find ${WRKSRC} -type f -name Makefile.in -print | xargs grep -l "^JPEG_LIB = "`
-do
-patch -p << END_OF_PATCH
---- $f.orig
-+++ $f
-@@ -72,1 +72,1 @@
--JPEG_LIB = \$(TOP_SRCDIR)/hdf/jpeg/libjpeg.a
-+#JPEG_LIB = \$(TOP_SRCDIR)/hdf/jpeg/libjpeg.a
-END_OF_PATCH
-done
-for f in `find ${WRKSRC} -type f -name Makefile.in -print | xargs grep -l "^ZLIBLIB="`
-do
-patch -p << END_OF_PATCH
---- $f.orig
-+++ $f
-@@ -72,2 +72,2 @@
--ZLIBINC=\$(srcdir)/../zlib
--ZLIBLIB=\$(srcdir)/../zlib
-+ZLIBINC=/usr/include
-+ZLIBLIB=-lz \$(pwrkdir)
-END_OF_PATCH
-done
-
-for f in `find ${WRKSRC} -type f -name Makefile.in -print | xargs grep -l "^ZLIBLIB="`
-do
-patch -p << END_OF_PATCH
---- $f.orig
-+++ $f
-@@ -72,2 +72,2 @@
--ZLIBLIB=\$(srcdir)/../zlib
--ZLIBINC=\$(srcdir)/../zlib
-+ZLIBLIB=-lz
-+ZLIBINC=/usr/include
-END_OF_PATCH
-done
-
-for f in `find ${WRKSRC} -type f -name Makefile.in -print | xargs grep -l "^JPEGLIB="`
-do
-patch -p << END_OF_PATCH
---- $f.orig
-+++ $f
-@@ -72,2 +72,2 @@
--JPEGINC=\$(srcdir)/../jpeg
--JPEGLIB=\$(srcdir)/../jpeg
-+JPEGINC=\$(prefix)/include
-+JPEGLIB=\$(prefix)/lib
-END_OF_PATCH
-done
-
-for f in `find ${WRKSRC} -type f -name Makefile.in -print | xargs grep -l "^JPEGLIB="`
-do
-patch -p << END_OF_PATCH
---- $f.orig
-+++ $f
-@@ -72,2 +72,2 @@
--JPEGLIB=\$(srcdir)/../jpeg
--JPEGINC=\$(srcdir)/../jpeg
-+JPEGLIB=\$(prefix)/lib
-+JPEGINC=\$(prefix)/include
-END_OF_PATCH
-done
diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile
deleted file mode 100644
index c43f4784cb27..000000000000
--- a/science/hdf5-18/Makefile
+++ /dev/null
@@ -1,41 +0,0 @@
-# ex:ts=8
-# New ports collection makefile for:	HDF5
-# Date created:			Jul 7, 2002
-# Whom:				ijliao
-#
-# $FreeBSD$
-#
-
-PORTNAME=	hdf5
-PORTVERSION=	1.4.4
-CATEGORIES=	graphics
-MASTER_SITES=	ftp://hdf.ncsa.uiuc.edu/HDF5/hdf5-${PORTVERSION}/src/
-
-MAINTAINER=	ports@FreeBSD.org
-
-USE_REINPLACE=	yes
-USE_PERL5=	yes
-USE_OPENSSL=	yes
-USE_LIBTOOL=	yes
-LIBTOOLFILES=	configure c++/configure
-CONFIGURE_TARGET=	--build=${ARCH}-portbld-freebsd${OSREL}
-CONFIGURE_ENV=	CPPFLAGS="${PTHREAD_CFLAGS}" LDFLAGS="${PTHREAD_LIBS}"
-CONFIGURE_ARGS=	--enable-cxx --enable-production \
-		--enable-threadsafe --disable-debug \
-		--with-ssl --with-pthread
-INSTALLS_SHLIB=	yes
-
-post-patch:
-	@${REINPLACE_CMD} -e 's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure
-	@${REINPLACE_CMD} -e 's|[\$$]CFLAGS -pthread|\$$CFLAGS|g ; \
-		 s|-D_THREAD_SAFE|${PTHREAD_CFLAGS}|g ; \
-		 s|[\$$]LDFLAGS -pthread|\$$LDFLAGS ${PTHREAD_LIBS}|g' \
-			${WRKSRC}/config/freebsd
-	@${REINPLACE_CMD} -e 's|-O2||g' ${WRKSRC}/config/gnu-flags
-
-post-install:
-.for file in gif2h5 h52gif h5debug h5dump h5import h5ls h5perf h5repart
-	@${STRIP_CMD} ${PREFIX}/bin/${file}
-.endfor
-
-.include <bsd.port.mk>
diff --git a/science/hdf5-18/distinfo b/science/hdf5-18/distinfo
deleted file mode 100644
index cde821405088..000000000000
--- a/science/hdf5-18/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (hdf5-1.4.4.tar.gz) = 327fe5a67118b78f0d032065ab4ccb12
diff --git a/science/hdf5-18/files/patch-c++::configure b/science/hdf5-18/files/patch-c++::configure
deleted file mode 100644
index ae57d3016cd8..000000000000
--- a/science/hdf5-18/files/patch-c++::configure
+++ /dev/null
@@ -1,10 +0,0 @@
---- c++/configure.orig	Fri Jun 28 03:42:45 2002
-+++ c++/configure	Wed Jul 10 01:41:13 2002
-@@ -7563,6 +7563,7 @@
- 
- # This can be used to rebuild libtool when needed
- LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh"
-+$ac_aux_dir/ltconfig $LIBTOOL_DEPS
- 
- # Always use our own libtool.
- LIBTOOL='$(SHELL) $(top_builddir)/libtool'
diff --git a/science/hdf5-18/files/patch-commence.in b/science/hdf5-18/files/patch-commence.in
deleted file mode 100644
index 8da9308386cd..000000000000
--- a/science/hdf5-18/files/patch-commence.in
+++ /dev/null
@@ -1,11 +0,0 @@
---- config/commence.in.orig	Sun Jul  7 20:15:36 2002
-+++ config/commence.in	Sun Jul  7 20:15:58 2002
-@@ -26,7 +26,7 @@
- RM=rm -f
- CP=cp
- INSTALL=@INSTALL@
--INSTALL_PROGRAM=@INSTALL_PROGRAM@
-+INSTALL_PROGRAM=@INSTALL_SCRIPT@
- INSTALL_DATA=@INSTALL_DATA@
- RUNSERIAL=@RUNSERIAL@
- RUNPARALLEL=@RUNPARALLEL@
diff --git a/science/hdf5-18/files/patch-configure b/science/hdf5-18/files/patch-configure
deleted file mode 100644
index 2ee407ec215f..000000000000
--- a/science/hdf5-18/files/patch-configure
+++ /dev/null
@@ -1,10 +0,0 @@
---- configure.orig	Sat Jun 29 05:03:55 2002
-+++ configure	Wed Jul 10 01:40:52 2002
-@@ -7263,6 +7263,7 @@
- 
- # This can be used to rebuild libtool when needed
- LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh"
-+$ac_aux_dir/ltconfig $LIBTOOL_DEPS
- 
- # Always use our own libtool.
- LIBTOOL='$(SHELL) $(top_builddir)/libtool'
diff --git a/science/hdf5-18/pkg-comment b/science/hdf5-18/pkg-comment
deleted file mode 100644
index 2f8affd569f0..000000000000
--- a/science/hdf5-18/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Hierarchical Data Format library (from NCSA)
diff --git a/science/hdf5-18/pkg-descr b/science/hdf5-18/pkg-descr
deleted file mode 100644
index 35a0fc9e23cf..000000000000
--- a/science/hdf5-18/pkg-descr
+++ /dev/null
@@ -1,17 +0,0 @@
-HDF5 is a completely new Hierarchical Data Format product consisting of a
-data format specification and a supporting library implementation. HDF5 is
-designed to address some of the limitations of the older HDF product and to
-address current and anticipated requirements of modern systems and
-applications.
-
-HDF5 includes the following improvements.
-   - A new file format designed to address some of the deficiencies of HDF4.x,
-     particularly the need to store larger files and more objects per file.
-   - A simpler, more comprehensive data model that includes only two basic
-     structures: a multidimensional array of record structures, and a grouping
-     structure.
-   - A simpler, better-engineered library and API, with improved support for
-     parallel I/O, threads, and other requirements imposed by modern systems
-     and applications.
-
-WWW: http://hdf.ncsa.uiuc.edu/HDF5/
diff --git a/science/hdf5-18/pkg-plist b/science/hdf5-18/pkg-plist
deleted file mode 100644
index a1d316865919..000000000000
--- a/science/hdf5-18/pkg-plist
+++ /dev/null
@@ -1,77 +0,0 @@
-bin/gif2h5
-bin/h52gif
-bin/h5cc
-bin/h5debug
-bin/h5dump
-bin/h5import
-bin/h5ls
-bin/h5perf
-bin/h5redeploy
-bin/h5repart
-include/H5ACpublic.h
-include/H5AbstractDs.h
-include/H5Alltypes.h
-include/H5Apublic.h
-include/H5AtomType.h
-include/H5Attribute.h
-include/H5Bpublic.h
-include/H5Classes.h
-include/H5CommonFG.h
-include/H5CompType.h
-include/H5Cpp.h
-include/H5DataSet.h
-include/H5DataSpace.h
-include/H5DataType.h
-include/H5DcreatProp.h
-include/H5Dpublic.h
-include/H5DxferProp.h
-include/H5EnumType.h
-include/H5Epublic.h
-include/H5Exception.h
-include/H5FDcore.h
-include/H5FDfamily.h
-include/H5FDgass.h
-include/H5FDlog.h
-include/H5FDmpio.h
-include/H5FDmulti.h
-include/H5FDpublic.h
-include/H5FDsec2.h
-include/H5FDsrb.h
-include/H5FDstdio.h
-include/H5FDstream.h
-include/H5FaccProp.h
-include/H5FcreatProp.h
-include/H5File.h
-include/H5FloatType.h
-include/H5Fpublic.h
-include/H5Gpublic.h
-include/H5Group.h
-include/H5HGpublic.h
-include/H5HLpublic.h
-include/H5IdComponent.h
-include/H5Idtemplates.h
-include/H5Include.h
-include/H5IntType.h
-include/H5Ipublic.h
-include/H5Library.h
-include/H5MMpublic.h
-include/H5Object.h
-include/H5Opublic.h
-include/H5Ppublic.h
-include/H5PredType.h
-include/H5PropList.h
-include/H5RefCounter.h
-include/H5Rpublic.h
-include/H5Spublic.h
-include/H5StrType.h
-include/H5Tpublic.h
-include/H5Zpublic.h
-include/H5api_adpt.h
-include/H5pubconf.h
-include/H5public.h
-include/hdf5.h
-lib/libhdf5.a
-lib/libhdf5.settings
-lib/libhdf5.so
-lib/libhdf5.so.0
-lib/libhdf5_cpp.a
diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile
deleted file mode 100644
index c43f4784cb27..000000000000
--- a/science/hdf5/Makefile
+++ /dev/null
@@ -1,41 +0,0 @@
-# ex:ts=8
-# New ports collection makefile for:	HDF5
-# Date created:			Jul 7, 2002
-# Whom:				ijliao
-#
-# $FreeBSD$
-#
-
-PORTNAME=	hdf5
-PORTVERSION=	1.4.4
-CATEGORIES=	graphics
-MASTER_SITES=	ftp://hdf.ncsa.uiuc.edu/HDF5/hdf5-${PORTVERSION}/src/
-
-MAINTAINER=	ports@FreeBSD.org
-
-USE_REINPLACE=	yes
-USE_PERL5=	yes
-USE_OPENSSL=	yes
-USE_LIBTOOL=	yes
-LIBTOOLFILES=	configure c++/configure
-CONFIGURE_TARGET=	--build=${ARCH}-portbld-freebsd${OSREL}
-CONFIGURE_ENV=	CPPFLAGS="${PTHREAD_CFLAGS}" LDFLAGS="${PTHREAD_LIBS}"
-CONFIGURE_ARGS=	--enable-cxx --enable-production \
-		--enable-threadsafe --disable-debug \
-		--with-ssl --with-pthread
-INSTALLS_SHLIB=	yes
-
-post-patch:
-	@${REINPLACE_CMD} -e 's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure
-	@${REINPLACE_CMD} -e 's|[\$$]CFLAGS -pthread|\$$CFLAGS|g ; \
-		 s|-D_THREAD_SAFE|${PTHREAD_CFLAGS}|g ; \
-		 s|[\$$]LDFLAGS -pthread|\$$LDFLAGS ${PTHREAD_LIBS}|g' \
-			${WRKSRC}/config/freebsd
-	@${REINPLACE_CMD} -e 's|-O2||g' ${WRKSRC}/config/gnu-flags
-
-post-install:
-.for file in gif2h5 h52gif h5debug h5dump h5import h5ls h5perf h5repart
-	@${STRIP_CMD} ${PREFIX}/bin/${file}
-.endfor
-
-.include <bsd.port.mk>
diff --git a/science/hdf5/distinfo b/science/hdf5/distinfo
deleted file mode 100644
index cde821405088..000000000000
--- a/science/hdf5/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (hdf5-1.4.4.tar.gz) = 327fe5a67118b78f0d032065ab4ccb12
diff --git a/science/hdf5/files/patch-c++::configure b/science/hdf5/files/patch-c++::configure
deleted file mode 100644
index ae57d3016cd8..000000000000
--- a/science/hdf5/files/patch-c++::configure
+++ /dev/null
@@ -1,10 +0,0 @@
---- c++/configure.orig	Fri Jun 28 03:42:45 2002
-+++ c++/configure	Wed Jul 10 01:41:13 2002
-@@ -7563,6 +7563,7 @@
- 
- # This can be used to rebuild libtool when needed
- LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh"
-+$ac_aux_dir/ltconfig $LIBTOOL_DEPS
- 
- # Always use our own libtool.
- LIBTOOL='$(SHELL) $(top_builddir)/libtool'
diff --git a/science/hdf5/files/patch-commence.in b/science/hdf5/files/patch-commence.in
deleted file mode 100644
index 8da9308386cd..000000000000
--- a/science/hdf5/files/patch-commence.in
+++ /dev/null
@@ -1,11 +0,0 @@
---- config/commence.in.orig	Sun Jul  7 20:15:36 2002
-+++ config/commence.in	Sun Jul  7 20:15:58 2002
-@@ -26,7 +26,7 @@
- RM=rm -f
- CP=cp
- INSTALL=@INSTALL@
--INSTALL_PROGRAM=@INSTALL_PROGRAM@
-+INSTALL_PROGRAM=@INSTALL_SCRIPT@
- INSTALL_DATA=@INSTALL_DATA@
- RUNSERIAL=@RUNSERIAL@
- RUNPARALLEL=@RUNPARALLEL@
diff --git a/science/hdf5/files/patch-configure b/science/hdf5/files/patch-configure
deleted file mode 100644
index 2ee407ec215f..000000000000
--- a/science/hdf5/files/patch-configure
+++ /dev/null
@@ -1,10 +0,0 @@
---- configure.orig	Sat Jun 29 05:03:55 2002
-+++ configure	Wed Jul 10 01:40:52 2002
-@@ -7263,6 +7263,7 @@
- 
- # This can be used to rebuild libtool when needed
- LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh"
-+$ac_aux_dir/ltconfig $LIBTOOL_DEPS
- 
- # Always use our own libtool.
- LIBTOOL='$(SHELL) $(top_builddir)/libtool'
diff --git a/science/hdf5/pkg-comment b/science/hdf5/pkg-comment
deleted file mode 100644
index 2f8affd569f0..000000000000
--- a/science/hdf5/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Hierarchical Data Format library (from NCSA)
diff --git a/science/hdf5/pkg-descr b/science/hdf5/pkg-descr
deleted file mode 100644
index 35a0fc9e23cf..000000000000
--- a/science/hdf5/pkg-descr
+++ /dev/null
@@ -1,17 +0,0 @@
-HDF5 is a completely new Hierarchical Data Format product consisting of a
-data format specification and a supporting library implementation. HDF5 is
-designed to address some of the limitations of the older HDF product and to
-address current and anticipated requirements of modern systems and
-applications.
-
-HDF5 includes the following improvements.
-   - A new file format designed to address some of the deficiencies of HDF4.x,
-     particularly the need to store larger files and more objects per file.
-   - A simpler, more comprehensive data model that includes only two basic
-     structures: a multidimensional array of record structures, and a grouping
-     structure.
-   - A simpler, better-engineered library and API, with improved support for
-     parallel I/O, threads, and other requirements imposed by modern systems
-     and applications.
-
-WWW: http://hdf.ncsa.uiuc.edu/HDF5/
diff --git a/science/hdf5/pkg-plist b/science/hdf5/pkg-plist
deleted file mode 100644
index a1d316865919..000000000000
--- a/science/hdf5/pkg-plist
+++ /dev/null
@@ -1,77 +0,0 @@
-bin/gif2h5
-bin/h52gif
-bin/h5cc
-bin/h5debug
-bin/h5dump
-bin/h5import
-bin/h5ls
-bin/h5perf
-bin/h5redeploy
-bin/h5repart
-include/H5ACpublic.h
-include/H5AbstractDs.h
-include/H5Alltypes.h
-include/H5Apublic.h
-include/H5AtomType.h
-include/H5Attribute.h
-include/H5Bpublic.h
-include/H5Classes.h
-include/H5CommonFG.h
-include/H5CompType.h
-include/H5Cpp.h
-include/H5DataSet.h
-include/H5DataSpace.h
-include/H5DataType.h
-include/H5DcreatProp.h
-include/H5Dpublic.h
-include/H5DxferProp.h
-include/H5EnumType.h
-include/H5Epublic.h
-include/H5Exception.h
-include/H5FDcore.h
-include/H5FDfamily.h
-include/H5FDgass.h
-include/H5FDlog.h
-include/H5FDmpio.h
-include/H5FDmulti.h
-include/H5FDpublic.h
-include/H5FDsec2.h
-include/H5FDsrb.h
-include/H5FDstdio.h
-include/H5FDstream.h
-include/H5FaccProp.h
-include/H5FcreatProp.h
-include/H5File.h
-include/H5FloatType.h
-include/H5Fpublic.h
-include/H5Gpublic.h
-include/H5Group.h
-include/H5HGpublic.h
-include/H5HLpublic.h
-include/H5IdComponent.h
-include/H5Idtemplates.h
-include/H5Include.h
-include/H5IntType.h
-include/H5Ipublic.h
-include/H5Library.h
-include/H5MMpublic.h
-include/H5Object.h
-include/H5Opublic.h
-include/H5Ppublic.h
-include/H5PredType.h
-include/H5PropList.h
-include/H5RefCounter.h
-include/H5Rpublic.h
-include/H5Spublic.h
-include/H5StrType.h
-include/H5Tpublic.h
-include/H5Zpublic.h
-include/H5api_adpt.h
-include/H5pubconf.h
-include/H5public.h
-include/hdf5.h
-lib/libhdf5.a
-lib/libhdf5.settings
-lib/libhdf5.so
-lib/libhdf5.so.0
-lib/libhdf5_cpp.a
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
deleted file mode 100644
index 090758cd7b30..000000000000
--- a/science/netcdf/Makefile
+++ /dev/null
@@ -1,38 +0,0 @@
-# New ports collection makefile for:	netcdf
-# Date created:		29 July 1999
-# Whom:			Thomas Gellekum <tg@FreeBSD.org>
-#
-# $FreeBSD$
-#
-
-PORTNAME=	netcdf
-PORTVERSION=	3.5.0
-CATEGORIES=	math
-MASTER_SITES=	ftp://unidata.ucar.edu/pub/netcdf/
-#DISTNAME=	${PORTNAME}-${PORTVERSION:S/.b/-beta/}
-EXTRACT_SUFX=	.tar.Z
-
-MAINTAINER=	ports@FreeBSD.org
-
-WRKSRC=		${WRKDIR}/${DISTNAME}/src
-
-GNU_CONFIGURE=	yes
-CONFIGURE_ENV=	CPPFLAGS="-fPIC -DPIC -Df2cFortran"
-INSTALLS_SHLIB=	yes
-
-MAN1=	ncdump.1 ncgen.1
-MAN3=	netcdf.3 netcdf.3f
-
-post-build:
-	@(cd ${WRKSRC}/libsrc && \
-		${SETENV} ${MAKE_ENV} ${MAKE} linux_shared_library)
-	@(cd ${WRKSRC}/cxx && \
-		${SETENV} ${MAKE_ENV} ${MAKE} linux_shared_library)
-
-post-install:
-	${INSTALL_DATA} ${WRKSRC}/libsrc/libnetcdf.so ${PREFIX}/lib/libnetcdf.so.1
-	${LN} -sf libnetcdf.so.1 ${PREFIX}/lib/libnetcdf.so
-	${INSTALL_DATA} ${WRKSRC}/cxx/libnetcdf_c++.so ${PREFIX}/lib/libnetcdf_c++.so.1
-	${LN} -sf libnetcdf_c++.so.1 ${PREFIX}/lib/libnetcdf_c++.so
-
-.include <bsd.port.mk>
diff --git a/science/netcdf/distinfo b/science/netcdf/distinfo
deleted file mode 100644
index 35e68c0e47e7..000000000000
--- a/science/netcdf/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (netcdf-3.5.0.tar.Z) = 28640a40a44f982f90f5eeb15e917a1f
diff --git a/science/netcdf/files/patch-aa b/science/netcdf/files/patch-aa
deleted file mode 100644
index 43324e78712d..000000000000
--- a/science/netcdf/files/patch-aa
+++ /dev/null
@@ -1,19 +0,0 @@
---- rules.make.orig	Mon Mar 12 22:31:55 2001
-+++ rules.make	Mon Apr 30 14:02:44 2001
-@@ -145,14 +145,8 @@
- 	cp $(MANUAL) $@
- $(MANDIR)/man3/$(MANUAL):	$(MANDIR)/man3 $(MANUAL)
- 	cp $(MANUAL) $@
--$(MANDIR)/man3f/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL) \
--				$(MANDIR)/man3f
--	rm -f $@
--	ln -s $(MANDIR)/man3/$(MANUAL) $@
--$(MANDIR)/man3f90/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL) \
--				$(MANDIR)/man3f90
--	rm -f $@
--	ln -s $(MANDIR)/man3/$(MANUAL) $@
-+$(MANDIR)/man3f/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL)
-+$(MANDIR)/man3f90/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL)
- 
- ################################################################################
- # Cleanup:
diff --git a/science/netcdf/files/patch-ncvalues.cpp b/science/netcdf/files/patch-ncvalues.cpp
deleted file mode 100644
index 7dbb0bca2d02..000000000000
--- a/science/netcdf/files/patch-ncvalues.cpp
+++ /dev/null
@@ -1,25 +0,0 @@
---- cxx/ncvalues.cpp.orig	Wed Dec 23 02:21:49 1998
-+++ cxx/ncvalues.cpp	Tue Oct  1 10:27:32 2002
-@@ -310,7 +310,11 @@
-       os << the_values[i] << ", ";
-     if (the_number > 0)
-       os << the_values[the_number-1] ;
-+#if (__GNUC__ == 2)
-     os.flags(save);
-+#else
-+    os.flags(std::_Ios_Fmtflags(save));
-+#endif
-     return os;
- }
- 
-@@ -322,6 +326,10 @@
-       os << the_values[i] << ", ";
-     if (the_number > 0)
-       os << the_values[the_number-1];
-+#if (__GNUC__ == 2)
-     os.flags(save);
-+#else
-+    os.flags(std::_Ios_Fmtflags(save));
-+#endif
-     return os;
- }
diff --git a/science/netcdf/files/patch-netcdfcpp.h b/science/netcdf/files/patch-netcdfcpp.h
deleted file mode 100644
index 5d6747ad105b..000000000000
--- a/science/netcdf/files/patch-netcdfcpp.h
+++ /dev/null
@@ -1,29 +0,0 @@
---- cxx/netcdfcpp.h.orig	Mon Sep 16 16:25:44 2002
-+++ cxx/netcdfcpp.h	Mon Sep 16 16:26:23 2002
-@@ -154,7 +154,7 @@
-     virtual ~NcDim( void );
-     
-     // to construct dimensions, since constructor is private
--    friend NcFile;
-+    friend class NcFile;
- };
- 
- 
-@@ -357,7 +357,7 @@
-     void init_cur( void );
- 
-     // to make variables, since constructor is private
--  friend NcFile;
-+  friend class NcFile;
- };
- 
- 
-@@ -388,7 +388,7 @@
-     NcAtt( NcFile*, NcToken); // global attribute
-     
-     // To make attributes, since constructor is private
--  friend NcFile;
-+  friend class NcFile;
-   friend NcAtt* NcVar::get_att( NcToken ) const;
- };
- 
diff --git a/science/netcdf/pkg-comment b/science/netcdf/pkg-comment
deleted file mode 100644
index 15d74d212321..000000000000
--- a/science/netcdf/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Library for machine-independent, array-oriented data access
diff --git a/science/netcdf/pkg-descr b/science/netcdf/pkg-descr
deleted file mode 100644
index a8ab96607da6..000000000000
--- a/science/netcdf/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-NetCDF (network Common Data Form) is an interface for array-oriented
-data access and a library that provides an implementation of the
-interface. The netCDF library also defines a machine-independent
-format for representing scientific data. Together, the interface,
-library, and format support the creation, access, and sharing of
-scientific data. The netCDF software was developed at the Unidata
-Program Center in Boulder, Colorado.
-
-WWW: http://www.unidata.ucar.edu/packages/netcdf/
diff --git a/science/netcdf/pkg-plist b/science/netcdf/pkg-plist
deleted file mode 100644
index 34c2fa05a1a9..000000000000
--- a/science/netcdf/pkg-plist
+++ /dev/null
@@ -1,13 +0,0 @@
-bin/ncdump
-bin/ncgen
-include/ncvalues.h
-include/netcdf.h
-include/netcdf.hh
-include/netcdf.inc
-include/netcdfcpp.h
-lib/libnetcdf.a
-lib/libnetcdf.so
-lib/libnetcdf.so.1
-lib/libnetcdf_c++.a
-lib/libnetcdf_c++.so
-lib/libnetcdf_c++.so.1
diff --git a/science/netcdf4/Makefile b/science/netcdf4/Makefile
deleted file mode 100644
index 090758cd7b30..000000000000
--- a/science/netcdf4/Makefile
+++ /dev/null
@@ -1,38 +0,0 @@
-# New ports collection makefile for:	netcdf
-# Date created:		29 July 1999
-# Whom:			Thomas Gellekum <tg@FreeBSD.org>
-#
-# $FreeBSD$
-#
-
-PORTNAME=	netcdf
-PORTVERSION=	3.5.0
-CATEGORIES=	math
-MASTER_SITES=	ftp://unidata.ucar.edu/pub/netcdf/
-#DISTNAME=	${PORTNAME}-${PORTVERSION:S/.b/-beta/}
-EXTRACT_SUFX=	.tar.Z
-
-MAINTAINER=	ports@FreeBSD.org
-
-WRKSRC=		${WRKDIR}/${DISTNAME}/src
-
-GNU_CONFIGURE=	yes
-CONFIGURE_ENV=	CPPFLAGS="-fPIC -DPIC -Df2cFortran"
-INSTALLS_SHLIB=	yes
-
-MAN1=	ncdump.1 ncgen.1
-MAN3=	netcdf.3 netcdf.3f
-
-post-build:
-	@(cd ${WRKSRC}/libsrc && \
-		${SETENV} ${MAKE_ENV} ${MAKE} linux_shared_library)
-	@(cd ${WRKSRC}/cxx && \
-		${SETENV} ${MAKE_ENV} ${MAKE} linux_shared_library)
-
-post-install:
-	${INSTALL_DATA} ${WRKSRC}/libsrc/libnetcdf.so ${PREFIX}/lib/libnetcdf.so.1
-	${LN} -sf libnetcdf.so.1 ${PREFIX}/lib/libnetcdf.so
-	${INSTALL_DATA} ${WRKSRC}/cxx/libnetcdf_c++.so ${PREFIX}/lib/libnetcdf_c++.so.1
-	${LN} -sf libnetcdf_c++.so.1 ${PREFIX}/lib/libnetcdf_c++.so
-
-.include <bsd.port.mk>
diff --git a/science/netcdf4/distinfo b/science/netcdf4/distinfo
deleted file mode 100644
index 35e68c0e47e7..000000000000
--- a/science/netcdf4/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (netcdf-3.5.0.tar.Z) = 28640a40a44f982f90f5eeb15e917a1f
diff --git a/science/netcdf4/files/patch-aa b/science/netcdf4/files/patch-aa
deleted file mode 100644
index 43324e78712d..000000000000
--- a/science/netcdf4/files/patch-aa
+++ /dev/null
@@ -1,19 +0,0 @@
---- rules.make.orig	Mon Mar 12 22:31:55 2001
-+++ rules.make	Mon Apr 30 14:02:44 2001
-@@ -145,14 +145,8 @@
- 	cp $(MANUAL) $@
- $(MANDIR)/man3/$(MANUAL):	$(MANDIR)/man3 $(MANUAL)
- 	cp $(MANUAL) $@
--$(MANDIR)/man3f/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL) \
--				$(MANDIR)/man3f
--	rm -f $@
--	ln -s $(MANDIR)/man3/$(MANUAL) $@
--$(MANDIR)/man3f90/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL) \
--				$(MANDIR)/man3f90
--	rm -f $@
--	ln -s $(MANDIR)/man3/$(MANUAL) $@
-+$(MANDIR)/man3f/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL)
-+$(MANDIR)/man3f90/$(MANUAL):	$(MANDIR)/man3 $(MANDIR)/man3/$(MANUAL)
- 
- ################################################################################
- # Cleanup:
diff --git a/science/netcdf4/files/patch-ncvalues.cpp b/science/netcdf4/files/patch-ncvalues.cpp
deleted file mode 100644
index 7dbb0bca2d02..000000000000
--- a/science/netcdf4/files/patch-ncvalues.cpp
+++ /dev/null
@@ -1,25 +0,0 @@
---- cxx/ncvalues.cpp.orig	Wed Dec 23 02:21:49 1998
-+++ cxx/ncvalues.cpp	Tue Oct  1 10:27:32 2002
-@@ -310,7 +310,11 @@
-       os << the_values[i] << ", ";
-     if (the_number > 0)
-       os << the_values[the_number-1] ;
-+#if (__GNUC__ == 2)
-     os.flags(save);
-+#else
-+    os.flags(std::_Ios_Fmtflags(save));
-+#endif
-     return os;
- }
- 
-@@ -322,6 +326,10 @@
-       os << the_values[i] << ", ";
-     if (the_number > 0)
-       os << the_values[the_number-1];
-+#if (__GNUC__ == 2)
-     os.flags(save);
-+#else
-+    os.flags(std::_Ios_Fmtflags(save));
-+#endif
-     return os;
- }
diff --git a/science/netcdf4/files/patch-netcdfcpp.h b/science/netcdf4/files/patch-netcdfcpp.h
deleted file mode 100644
index 5d6747ad105b..000000000000
--- a/science/netcdf4/files/patch-netcdfcpp.h
+++ /dev/null
@@ -1,29 +0,0 @@
---- cxx/netcdfcpp.h.orig	Mon Sep 16 16:25:44 2002
-+++ cxx/netcdfcpp.h	Mon Sep 16 16:26:23 2002
-@@ -154,7 +154,7 @@
-     virtual ~NcDim( void );
-     
-     // to construct dimensions, since constructor is private
--    friend NcFile;
-+    friend class NcFile;
- };
- 
- 
-@@ -357,7 +357,7 @@
-     void init_cur( void );
- 
-     // to make variables, since constructor is private
--  friend NcFile;
-+  friend class NcFile;
- };
- 
- 
-@@ -388,7 +388,7 @@
-     NcAtt( NcFile*, NcToken); // global attribute
-     
-     // To make attributes, since constructor is private
--  friend NcFile;
-+  friend class NcFile;
-   friend NcAtt* NcVar::get_att( NcToken ) const;
- };
- 
diff --git a/science/netcdf4/pkg-comment b/science/netcdf4/pkg-comment
deleted file mode 100644
index 15d74d212321..000000000000
--- a/science/netcdf4/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-Library for machine-independent, array-oriented data access
diff --git a/science/netcdf4/pkg-descr b/science/netcdf4/pkg-descr
deleted file mode 100644
index a8ab96607da6..000000000000
--- a/science/netcdf4/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-NetCDF (network Common Data Form) is an interface for array-oriented
-data access and a library that provides an implementation of the
-interface. The netCDF library also defines a machine-independent
-format for representing scientific data. Together, the interface,
-library, and format support the creation, access, and sharing of
-scientific data. The netCDF software was developed at the Unidata
-Program Center in Boulder, Colorado.
-
-WWW: http://www.unidata.ucar.edu/packages/netcdf/
diff --git a/science/netcdf4/pkg-plist b/science/netcdf4/pkg-plist
deleted file mode 100644
index 34c2fa05a1a9..000000000000
--- a/science/netcdf4/pkg-plist
+++ /dev/null
@@ -1,13 +0,0 @@
-bin/ncdump
-bin/ncgen
-include/ncvalues.h
-include/netcdf.h
-include/netcdf.hh
-include/netcdf.inc
-include/netcdfcpp.h
-lib/libnetcdf.a
-lib/libnetcdf.so
-lib/libnetcdf.so.1
-lib/libnetcdf_c++.a
-lib/libnetcdf_c++.so
-lib/libnetcdf_c++.so.1
diff --git a/science/pyvox/Makefile b/science/pyvox/Makefile
deleted file mode 100644
index 6271392638fd..000000000000
--- a/science/pyvox/Makefile
+++ /dev/null
@@ -1,31 +0,0 @@
-# ex:ts=8
-# Ports collection Makefile for:	bblimage
-# Date created:			Jul 22, 2002
-# Whom:				ijliao
-#
-# $FreeBSD$
-#
-
-PORTNAME=	bblimage
-PORTVERSION=	0.66
-CATEGORIES=	science
-MASTER_SITES=	http://www.uphs.upenn.edu/bbl/software/files/
-EXTRACT_SUFX=	.src.tgz
-
-MAINTAINER=	ports@FreeBSD.org
-
-USE_PYTHON=	yes
-USE_REINPLACE=	yes
-GNU_CONFIGURE=	yes
-CONFIGURE_ARGS=	--with-lapack --with-python
-USE_GMAKE=	yes
-
-MAN1=	anonbblanz.1 bblimage.1 binnseg.1 conseg.1 decomment.1 dumpbblanz.1 \
-	imstack.1 inleav2.1 lovar.1 qdv.1 rpsamp.1 skmiv.1 swab.1 usb2uc.1 \
-	vibihist.1 vihist.1
-MAN5=	cdata.5 mri_data.5 param.5
-
-post-patch:
-	@${REINPLACE_CMD} -e "s|1\.5|2.2|g" ${WRKSRC}/configure ${WRKSRC}/Makefile.in
-
-.include <bsd.port.mk>
diff --git a/science/pyvox/distinfo b/science/pyvox/distinfo
deleted file mode 100644
index f68a65f27535..000000000000
--- a/science/pyvox/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (bblimage-0.66.src.tgz) = 9b01e8128c4009984300453ee00d601c
diff --git a/science/pyvox/pkg-comment b/science/pyvox/pkg-comment
deleted file mode 100644
index 0c0dfba72789..000000000000
--- a/science/pyvox/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A set of software tools for medical image processing
diff --git a/science/pyvox/pkg-descr b/science/pyvox/pkg-descr
deleted file mode 100644
index 9753cc4f0d55..000000000000
--- a/science/pyvox/pkg-descr
+++ /dev/null
@@ -1,10 +0,0 @@
-BBLimage is a set of software tools for medical image processing, particularly
-skull stripping and segmentation of MR brain images; tools to support other
-applications may be added later. These tools are intended to support
-researchers who need to prototype new image analysis algorithms or to develop
-automated image analysis tools for specific image analysis applications. The
-sequence of processing operations is specified through a scripting language
-which can be used interactively or in command files; the language used is an
-extension of Python.
-
-WWW: http://www.uphs.upenn.edu/bbl/software/bblimage/
diff --git a/science/pyvox/pkg-plist b/science/pyvox/pkg-plist
deleted file mode 100644
index 2d43acd1cffe..000000000000
--- a/science/pyvox/pkg-plist
+++ /dev/null
@@ -1,24 +0,0 @@
-bin/anonbblanz
-bin/binnseg
-bin/conseg
-bin/decomment
-bin/dumpbblanz
-bin/imstack
-bin/inleav2
-bin/lovar
-bin/rowcol
-bin/rpsamp
-bin/skmiv
-bin/swab
-bin/usb2uc
-bin/vibihist
-bin/vihist
-lib/libbbli.so
-lib/python2.2/site-packages/exim.so
-lib/python2.2/site-packages/optim.py
-lib/python2.2/site-packages/optim.pyc
-lib/python2.2/site-packages/pyvox.py
-lib/python2.2/site-packages/pyvox.pyc
-lib/python2.2/site-packages/pyvoxC.so
-lib/python2.2/site-packages/regis.py
-lib/python2.2/site-packages/regis.pyc
diff --git a/science/qcl/Makefile b/science/qcl/Makefile
deleted file mode 100644
index 251e5de939e4..000000000000
--- a/science/qcl/Makefile
+++ /dev/null
@@ -1,21 +0,0 @@
-# ports collection makefile for:	qcl
-# Date created:        23 May 2001
-# Whom:                Brad Huntting <huntting@glarp.com>
-#
-# $FreeBSD$
-#
-
-PORTNAME=	qcl
-PORTVERSION=	0.4.1
-CATEGORIES=	emulators math
-MASTER_SITES=	http://tph.tuwien.ac.at/~oemer/tgz/
-EXTRACT_SUFX=	.tgz
-
-MAINTAINER=	huntting@glarp.com
-
-LIB_DEPENDS=	gnugetopt.1:${PORTSDIR}/devel/libgnugetopt
-
-post-install:
-	strip ${PREFIX}/bin/qcl
-
-.include <bsd.port.mk>
diff --git a/science/qcl/distinfo b/science/qcl/distinfo
deleted file mode 100644
index 55e5672d43a3..000000000000
--- a/science/qcl/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (qcl-0.4.1.tgz) = 0ff6cdb3c29cc3c533f3b27018662a57
diff --git a/science/qcl/files/patch-aa b/science/qcl/files/patch-aa
deleted file mode 100644
index 1910760c87cb..000000000000
--- a/science/qcl/files/patch-aa
+++ /dev/null
@@ -1,124 +0,0 @@
---- Makefile.orig	Wed Jan 17 13:17:06 2001
-+++ Makefile	Thu May 24 15:51:01 2001
-@@ -14,29 +14,25 @@
- 
- # Directory for Standard .qcl files
- 
--QCLDIR = /usr/local/lib/qcl
-+QCLDIR = ${PREFIX}/share/qcl
- 
- # Path for qcl binaries
- 
--QCLBIN = /usr/local/bin
-+QCLBIN = ${PREFIX}/bin
- 
- # Debugging options
- 
--DEBUG = -g -DQCL_DEBUG -DQC_DEBUG
--#DEBUG = -O2
-+DEBUG = -O2
- 
- # Comment out if you don't have GNU readline on your system
- # explicit linking against libtermcap or libncurses may be required
- 
- RLOPT = -DQCL_USE_READLINE
--#RLLIB = -lreadline
--RLLIB = -lreadline -lncurses
-+RLLIB = -lreadline
- 
- # Replace with lex and yacc on non-GNU systems (untested)
- 
--LEX = flex
--YACC = bison
--INSTALL = install
-+INSTALL = install -c
- 
- ##### You shouldn't have to edit the stuff below #####
- 
-@@ -44,13 +40,15 @@
- QCLIB = $(QCDIR)/libqc.a
- QCLINC = lib
- 
--CC = g++
--CPP = $(CC) -E
--CFLAGS = -c -Wall $(DEBUG) $(RLOPT) -I$(QCDIR) -DDEF_INCLUDE_PATH="\"$(QCLDIR)\""
--LFLAGS = -L$(QCDIR) $(DEBUG) -lm -lfl -lqc $(RLLIB) 
-+CXXFLAGS += -Wall $(DEBUG) $(RLOPT) -I$(QCDIR) -I${PREFIX}/include -DDEF_INCLUDE_PATH="\"$(QCLDIR)\""
-+LDFLAGS += -L$(QCDIR) $(DEBUG) -L${PREFIX}/lib -lgnugetopt -lm -lfl -lqc $(RLLIB) 
-+
-+FILESCC = debug.cc error.cc eval.cc exec.cc extern.cc lex.cc \
-+	options.cc parse.cc print.cc qcl.cc quheap.cc symbols.cc \
-+	syntax.cc typcheck.cc types.cc yacc.cc
-+FILESH = debug.h error.h extern.h options.h parse.h quheap.h \
-+	symbols.h syntax.h types.h yacc.h
- 
--FILESCC = $(wildcard *.cc)
--FILESH = $(wildcard *.h)
- 
- SOURCE = $(FILESCC) $(FILESH) qcl.lex qcl.y Makefile
- 
-@@ -58,23 +56,11 @@
-           lex.o yacc.o print.o quheap.o extern.o eval.o exec.o \
-           parse.o options.o debug.o
- 
--all: do-it-all
-+all: build
-+
- 
--ifeq (.depend,$(wildcard .depend))
--include .depend
--do-it-all: build
--else
--do-it-all: dep
--	make
--endif
--
--#### Rules for depend
--
--dep: lex.cc yacc.cc yacc.h $(QCLIB)
--	for i in *.cc; do \
--	  $(CPP) -I$(QCDIR) -MM $$i; \
--	  echo -e '\t$(CC) $(CFLAGS)' $$i '\n'; \
--	done > .depend
-+dep: $(FILESCC) $(FILESH)
-+	$(CXX) -M $(CXXFLAGS) $(FILESCC) >.depend
- 
- lex.cc: qcl.lex
- 	$(LEX) -olex.cc qcl.lex
-@@ -86,24 +72,24 @@
- 	mv yacc.cc.h yacc.h
- 
- $(QCLIB):
--	cd $(QCDIR) && make libqc.a
-+	cd $(QCDIR) && $(MAKE) $(MAKEFLAGS) libqc.a
- 
- #### Rules for build
- 
- build: qcl $(QCLINC)/default.qcl
- 
- qcl: $(OBJECTS) qcl.o $(QCLIB)
--	$(CC) $(OBJECTS) qcl.o $(LFLAGS) -o qcl
-+	$(CXX) $(OBJECTS) qcl.o $(LDFLAGS) -o qcl
- 
- qcl-static: $(OBJECTS) qcl.o $(QCLIB)
--	$(CC) -static $(OBJECTS) qcl.o $(LFLAGS) -o qcl-static
-+	$(CXX) -static $(OBJECTS) qcl.o $(LDFLAGS) -o qcl-static
- 	strip qcl-static
- 
- $(QCLINC)/default.qcl: extern.cc
- 	grep "^//!" extern.cc | cut -c5- > $(QCLINC)/default.qcl
- 
- install: build
--	$(INSTALL) -m 0755 -d $(QCLBIN) $(QCLDIR)
-+	umask 022; mkdir -p $(QCLDIR); chmod 0755 $(QCLDIR)
- 	$(INSTALL) -m 0755 ./qcl $(QCLBIN)
- 	$(INSTALL) -m 0644 ./lib/default.qcl $(QCLDIR)
- 	$(INSTALL) -m 0644 ./lib/dft.qcl $(QCLDIR)
-@@ -115,6 +101,7 @@
- 	$(INSTALL) -m 0644 ./lib/roulette.qcl $(QCLDIR)
- 	$(INSTALL) -m 0644 ./lib/shor.qcl $(QCLDIR)
- 	$(INSTALL) -m 0644 ./lib/swap.qcl $(QCLDIR)
-+	$(INSTALL) -m 0644 ./lib/grover.qcl $(QCLDIR)
- 
- #### Other Functions
- 
diff --git a/science/qcl/pkg-comment b/science/qcl/pkg-comment
deleted file mode 100644
index 4b54f54940b8..000000000000
--- a/science/qcl/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A quantum computer simulator
diff --git a/science/qcl/pkg-descr b/science/qcl/pkg-descr
deleted file mode 100644
index 272a6df15c1b..000000000000
--- a/science/qcl/pkg-descr
+++ /dev/null
@@ -1,5 +0,0 @@
-This is a port of qcl, a quantum computer simulator.
-
-WWW: http://tph.tuwien.ac.at/~oemer/qcl.html
-
-- brad.huntting@glarp.com
diff --git a/science/qcl/pkg-plist b/science/qcl/pkg-plist
deleted file mode 100644
index 3df3c22741f3..000000000000
--- a/science/qcl/pkg-plist
+++ /dev/null
@@ -1,13 +0,0 @@
-bin/qcl
-share/qcl/default.qcl
-share/qcl/dft.qcl
-share/qcl/expmod.qcl
-share/qcl/fanout.qcl
-share/qcl/functions.qcl
-share/qcl/modarith.qcl
-share/qcl/qufunct.qcl
-share/qcl/roulette.qcl
-share/qcl/shor.qcl
-share/qcl/swap.qcl
-share/qcl/grover.qcl
-@dirrm share/qcl
diff --git a/science/qcl/scripts/configure b/science/qcl/scripts/configure
deleted file mode 100644
index 24c2ff96fdd1..000000000000
--- a/science/qcl/scripts/configure
+++ /dev/null
@@ -1,5 +0,0 @@
-#!/bin/sh
-
-cd $WRKSRC
-rm -f .depend
-make dep
diff --git a/science/ruby-netcdf/Makefile b/science/ruby-netcdf/Makefile
deleted file mode 100644
index eeaa42e2c273..000000000000
--- a/science/ruby-netcdf/Makefile
+++ /dev/null
@@ -1,36 +0,0 @@
-# New ports collection makefile for:	RubyNetCDF
-# Date created:		11 June 2002
-# Whom:			Akinori MUSHA aka knu <knu@idaemons.org>
-#
-# $FreeBSD$
-#
-
-PORTNAME=	netcdf
-PORTVERSION=	0.3.5
-CATEGORIES=	math ruby
-MASTER_SITES=	http://ruby.gfd-dennou.org/products/ruby-netcdf/
-PKGNAMEPREFIX=	${RUBY_PKGNAMEPREFIX}
-DISTNAME=	ruby-${PORTNAME}-${PORTVERSION}
-DIST_SUBDIR=	ruby
-
-MAINTAINER=	knu@FreeBSD.org
-
-LIB_DEPENDS=	netcdf.1:${PORTSDIR}/math/netcdf
-RUN_DEPENDS=	${RUBY_SITEARCHLIBDIR}/narray.so:${PORTSDIR}/math/ruby-narray
-
-USE_RUBY=	yes
-USE_RUBY_EXTCONF=	yes
-
-DOCS=		ChangeLog ToDo doc/*
-
-post-install:
-.if !defined(NOPORTDOCS)
-	${MKDIR} ${RUBY_EXAMPLESDIR}/${PORTNAME}
-	${INSTALL_DATA} ${WRKSRC}/demo/* ${RUBY_EXAMPLESDIR}/${PORTNAME}/
-	${MKDIR} ${RUBY_DOCDIR}/${PORTNAME}
-.for f in ${DOCS}
-	${INSTALL_DATA} ${WRKSRC}/${f} ${RUBY_DOCDIR}/${PORTNAME}/
-.endfor
-.endif
-
-.include <bsd.port.mk>
diff --git a/science/ruby-netcdf/distinfo b/science/ruby-netcdf/distinfo
deleted file mode 100644
index d4e3a929c38c..000000000000
--- a/science/ruby-netcdf/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (ruby/ruby-netcdf-0.3.5.tar.gz) = b518f1ca753fdee304c2fc289637168c
diff --git a/science/ruby-netcdf/pkg-comment b/science/ruby-netcdf/pkg-comment
deleted file mode 100644
index 464a991d66ce..000000000000
--- a/science/ruby-netcdf/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-A Ruby interface to the NetCDF scientific IO library
diff --git a/science/ruby-netcdf/pkg-descr b/science/ruby-netcdf/pkg-descr
deleted file mode 100644
index f89d48a0bdc3..000000000000
--- a/science/ruby-netcdf/pkg-descr
+++ /dev/null
@@ -1,5 +0,0 @@
-This is a Ruby interface to the NetCDF scientific IO library.
-
-Author:	Takeshi Horinouchi <horinout@kurasc.kyoto-u.ac.jp>
-	& Dennou Ruby Project
-WWW:	http://ruby.gfd-dennou.org/products/ruby-netcdf
diff --git a/science/ruby-netcdf/pkg-plist b/science/ruby-netcdf/pkg-plist
deleted file mode 100644
index bee7058c55b2..000000000000
--- a/science/ruby-netcdf/pkg-plist
+++ /dev/null
@@ -1,23 +0,0 @@
-%%RUBY_SITEARCHLIBDIR%%/numru/netcdfraw.so
-@unexec rmdir %B 2>/dev/null || true
-%%RUBY_SITELIBDIR%%/numru/netcdf.rb
-@unexec rmdir %B 2>/dev/null || true
-%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/netcdf/README
-%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/netcdf/demo1-create-alt.rb
-%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/netcdf/demo1-create.rb
-%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/netcdf/demo2-graphic.rb
-%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/netcdf/demo2-graphic_withAdvancedDCL.rb
-%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/netcdf/demo3-ncepclim.rb
-%%PORTDOCS%%%%RUBY_EXAMPLESDIR%%/netcdf/demo3-ncepclim_withAdvancedDCL.rb
-%%PORTDOCS%%@dirrm %%RUBY_EXAMPLESDIR%%/netcdf
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/ChangeLog
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/ToDo
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/README_JP.txt
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/Ref_man.html
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/Ref_man.rd
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/Ref_man_jp.html
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/Ref_man_jp.rd
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/Ref_man_jp_obsolete.doc
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/Ref_man_jp_obsolete.pdf
-%%PORTDOCS%%%%RUBY_DOCDIR%%/netcdf/to_html
-%%PORTDOCS%%@dirrm %%RUBY_DOCDIR%%/netcdf
author	cvs2svn <cvs2svn@FreeBSD.org>	2002-10-10 17:58:00 +0000
committer	cvs2svn <cvs2svn@FreeBSD.org>	2002-10-10 17:58:00 +0000
commit	47ac56be82c72f83caff34ce4ac8f8e71bf8065a (patch)
tree	9b024a0a3e5f7e9ea25f8a10c704c6fa17bdc4f1 /science
parent	a7b4667654401c6cff9093ae6ebd74c74d6776ac (diff)