diff options
| -rw-r--r-- | biology/emboss/Makefile | 5 | ||||
| -rw-r--r-- | biology/emboss/distinfo | 2 | ||||
| -rw-r--r-- | biology/emboss/pkg-message | 3 | ||||
| -rw-r--r-- | biology/emboss/pkg-plist | 169 |
4 files changed, 113 insertions, 66 deletions
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile index e246f10d8e31..a4309edff758 100644 --- a/biology/emboss/Makefile +++ b/biology/emboss/Makefile @@ -6,9 +6,10 @@ # PORTNAME= emboss -PORTVERSION= 1.4.0 +PORTVERSION= 1.5.0 CATEGORIES= biology -MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ +MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \ + ftp://ftp.no.embnet.org/pub/EMBOSS/ DISTNAME= EMBOSS-${PORTVERSION} MAINTAINER= johann@egenetics.com diff --git a/biology/emboss/distinfo b/biology/emboss/distinfo index f42c83e49367..21c791941839 100644 --- a/biology/emboss/distinfo +++ b/biology/emboss/distinfo @@ -1 +1 @@ -MD5 (EMBOSS-1.4.0.tar.gz) = ba096906cc10d0badbc1c479e61926c9 +MD5 (EMBOSS-1.5.0.tar.gz) = 633d21e6daf080ed0deed159d21fe920 diff --git a/biology/emboss/pkg-message b/biology/emboss/pkg-message index f14bff524b5a..a34183b481ce 100644 --- a/biology/emboss/pkg-message +++ b/biology/emboss/pkg-message @@ -19,4 +19,7 @@ system-wide emboss.default. Further EMBOSS documentation is available at: http://www.uk.embnet.org/Software/EMBOSS/Doc/ +The EMBOSS administrator's guide is available in various formats at: + ftp://ftp.no.embnet.org/pub/EMBOSS-extras/ + -------------------------------------------------------------------------- diff --git a/biology/emboss/pkg-plist b/biology/emboss/pkg-plist index b62a97f96d93..17f29251c4bd 100644 --- a/biology/emboss/pkg-plist +++ b/biology/emboss/pkg-plist @@ -2,6 +2,7 @@ bin/acdc bin/antigenic bin/backtranseq bin/banana +bin/btwisted bin/chaos bin/checktrans bin/chips @@ -25,10 +26,11 @@ bin/dotmatcher bin/dotpath bin/dottup bin/dreg -bin/einverted bin/iep +bin/einverted bin/embossdata bin/emma +bin/emowse bin/equicktandem bin/est2genome bin/etandem @@ -107,8 +109,8 @@ bin/stssearch bin/supermatcher bin/syco bin/textsearch -bin/tfextract bin/tfm +bin/tfextract bin/tfscan bin/tmap bin/transeq @@ -132,14 +134,13 @@ lib/libajaxg.a lib/libnucleus.so.1 lib/libnucleus.so lib/libnucleus.a -share/doc/EMBOSS/manuals/Makefile -share/doc/EMBOSS/manuals/Makefile.am -share/doc/EMBOSS/manuals/Makefile.in -share/doc/EMBOSS/manuals/Makefile.in.orig -share/doc/EMBOSS/programs/html/Makefile -share/doc/EMBOSS/programs/html/Makefile.am -share/doc/EMBOSS/programs/html/Makefile.in -share/doc/EMBOSS/programs/html/Makefile.in.orig +share/doc/EMBOSS/manuals/admin.sty +share/doc/EMBOSS/manuals/admin.tex +share/doc/EMBOSS/programs/html/SITE-DIRECTED.html +share/doc/EMBOSS/programs/html/alignment_global_group.html +share/doc/EMBOSS/programs/html/alignment_group.html +share/doc/EMBOSS/programs/html/alignment_local_group.html +share/doc/EMBOSS/programs/html/alignment_multiple_group.html share/doc/EMBOSS/programs/html/antigenic.html share/doc/EMBOSS/programs/html/backtranseq.html share/doc/EMBOSS/programs/html/banana.html @@ -148,20 +149,30 @@ share/doc/EMBOSS/programs/html/checktrans.html share/doc/EMBOSS/programs/html/chips.html share/doc/EMBOSS/programs/html/cirdna.html share/doc/EMBOSS/programs/html/codcmp.html +share/doc/EMBOSS/programs/html/coding_regions_group.html +share/doc/EMBOSS/programs/html/comparison_group.html share/doc/EMBOSS/programs/html/complex.html share/doc/EMBOSS/programs/html/compseq.html share/doc/EMBOSS/programs/html/cpgplot.html +share/doc/EMBOSS/programs/html/cpg_islands_group.html share/doc/EMBOSS/programs/html/cpgreport.html share/doc/EMBOSS/programs/html/cusp.html share/doc/EMBOSS/programs/html/cutseq.html share/doc/EMBOSS/programs/html/dan.html +share/doc/EMBOSS/programs/html/database_entry_extraction_group.html +share/doc/EMBOSS/programs/html/database_indexing_group.html +share/doc/EMBOSS/programs/html/database_information_group.html share/doc/EMBOSS/programs/html/dbiblast.html share/doc/EMBOSS/programs/html/dbifasta.html -share/doc/EMBOSS/programs/html/dbigcg.html share/doc/EMBOSS/programs/html/dbiflat.html +share/doc/EMBOSS/programs/html/dbigcg.html share/doc/EMBOSS/programs/html/descseq.html share/doc/EMBOSS/programs/html/diffseq.html share/doc/EMBOSS/programs/html/digest.html +share/doc/EMBOSS/programs/html/display_alignment_multiple_group.html +share/doc/EMBOSS/programs/html/dna_sequence_composition_group.html +share/doc/EMBOSS/programs/html/dna_sequence_features_group.html +share/doc/EMBOSS/programs/html/dna_sequence_properties_group.html share/doc/EMBOSS/programs/html/dotmatcher.html share/doc/EMBOSS/programs/html/dotpath.html share/doc/EMBOSS/programs/html/dottup.html @@ -169,6 +180,7 @@ share/doc/EMBOSS/programs/html/dreg.html share/doc/EMBOSS/programs/html/einverted.html share/doc/EMBOSS/programs/html/embossdata.html share/doc/EMBOSS/programs/html/emma.html +share/doc/EMBOSS/programs/html/enzyme_kinetics_group.html share/doc/EMBOSS/programs/html/equicktandem.html share/doc/EMBOSS/programs/html/est2genome.html share/doc/EMBOSS/programs/html/etandem.html @@ -178,11 +190,15 @@ share/doc/EMBOSS/programs/html/freak.html share/doc/EMBOSS/programs/html/fuzznuc.html share/doc/EMBOSS/programs/html/fuzzpro.html share/doc/EMBOSS/programs/html/fuzztran.html -share/doc/EMBOSS/programs/html/garnier.html share/doc/EMBOSS/programs/html/geecee.html +share/doc/EMBOSS/programs/html/garnier.html +share/doc/EMBOSS/programs/html/gene_finding_group.html share/doc/EMBOSS/programs/html/getorf.html +share/doc/EMBOSS/programs/html/groups.html share/doc/EMBOSS/programs/html/helixturnhelix.html +share/doc/EMBOSS/programs/html/hydropathy_group.html share/doc/EMBOSS/programs/html/iep.html +share/doc/EMBOSS/programs/html/index.html share/doc/EMBOSS/programs/html/infoseq.html share/doc/EMBOSS/programs/html/isochore.html share/doc/EMBOSS/programs/html/lindna.html @@ -191,8 +207,11 @@ share/doc/EMBOSS/programs/html/maskseq.html share/doc/EMBOSS/programs/html/matcher.html share/doc/EMBOSS/programs/html/megamerger.html share/doc/EMBOSS/programs/html/merger.html +share/doc/EMBOSS/programs/html/motifs_group.html share/doc/EMBOSS/programs/html/msbar.html +share/doc/EMBOSS/programs/html/mutation_group.html share/doc/EMBOSS/programs/html/needle.html +share/doc/EMBOSS/programs/html/new_group_group.html share/doc/EMBOSS/programs/html/newcpgreport.html share/doc/EMBOSS/programs/html/newcpgseek.html share/doc/EMBOSS/programs/html/newseq.html @@ -204,6 +223,7 @@ share/doc/EMBOSS/programs/html/palindrome.html share/doc/EMBOSS/programs/html/pasteseq.html share/doc/EMBOSS/programs/html/patmatdb.html share/doc/EMBOSS/programs/html/patmatmotifs.html +share/doc/EMBOSS/programs/html/pattern_matching_group.html share/doc/EMBOSS/programs/html/pepcoil.html share/doc/EMBOSS/programs/html/pepinfo.html share/doc/EMBOSS/programs/html/pepnet.html @@ -212,60 +232,102 @@ share/doc/EMBOSS/programs/html/pepwheel.html share/doc/EMBOSS/programs/html/pepwindow.html share/doc/EMBOSS/programs/html/pepwindowall.html share/doc/EMBOSS/programs/html/plotorf.html -share/doc/EMBOSS/programs/html/polydot.html share/doc/EMBOSS/programs/html/preg.html +share/doc/EMBOSS/programs/html/polydot.html share/doc/EMBOSS/programs/html/prettyplot.html share/doc/EMBOSS/programs/html/prettyseq.html share/doc/EMBOSS/programs/html/prima.html +share/doc/EMBOSS/programs/html/primers_group.html share/doc/EMBOSS/programs/html/primersearch.html share/doc/EMBOSS/programs/html/printsextract.html +share/doc/EMBOSS/programs/html/profiles_group.html share/doc/EMBOSS/programs/html/profit.html share/doc/EMBOSS/programs/html/prophecy.html share/doc/EMBOSS/programs/html/prophet.html share/doc/EMBOSS/programs/html/prosextract.html +share/doc/EMBOSS/programs/html/protein_sequence_composition_group.html +share/doc/EMBOSS/programs/html/protein_sequence_features_group.html +share/doc/EMBOSS/programs/html/protein_sequence_properties_group.html share/doc/EMBOSS/programs/html/pscan.html share/doc/EMBOSS/programs/html/rebaseextract.html share/doc/EMBOSS/programs/html/redata.html +share/doc/EMBOSS/programs/html/reformatting_group.html share/doc/EMBOSS/programs/html/remap.html +share/doc/EMBOSS/programs/html/repeats_group.html share/doc/EMBOSS/programs/html/restrict.html +share/doc/EMBOSS/programs/html/restriction_enzymes_group.html share/doc/EMBOSS/programs/html/revseq.html +share/doc/EMBOSS/programs/html/secondary_structure_group.html share/doc/EMBOSS/programs/html/seealso.html share/doc/EMBOSS/programs/html/seqmatchall.html share/doc/EMBOSS/programs/html/seqret.html share/doc/EMBOSS/programs/html/seqretall.html share/doc/EMBOSS/programs/html/seqretset.html +share/doc/EMBOSS/programs/html/sequence_comparison_group.html +share/doc/EMBOSS/programs/html/sequence_composition_group.html +share/doc/EMBOSS/programs/html/sequence_display_group.html +share/doc/EMBOSS/programs/html/sequence_editing_group.html share/doc/EMBOSS/programs/html/showdb.html +share/doc/EMBOSS/programs/html/sequence_information_group.html share/doc/EMBOSS/programs/html/showfeat.html share/doc/EMBOSS/programs/html/showorf.html share/doc/EMBOSS/programs/html/showseq.html share/doc/EMBOSS/programs/html/shuffleseq.html share/doc/EMBOSS/programs/html/sigcleave.html share/doc/EMBOSS/programs/html/silent.html +share/doc/EMBOSS/programs/html/site_directed_mutagenesis_group.html share/doc/EMBOSS/programs/html/splitter.html share/doc/EMBOSS/programs/html/stretcher.html share/doc/EMBOSS/programs/html/stssearch.html share/doc/EMBOSS/programs/html/supermatcher.html share/doc/EMBOSS/programs/html/syco.html +share/doc/EMBOSS/programs/html/text_search_group.html share/doc/EMBOSS/programs/html/textsearch.html share/doc/EMBOSS/programs/html/tfextract.html share/doc/EMBOSS/programs/html/tfm.html share/doc/EMBOSS/programs/html/tfscan.html share/doc/EMBOSS/programs/html/tmap.html share/doc/EMBOSS/programs/html/transeq.html +share/doc/EMBOSS/programs/html/transcription_group.html +share/doc/EMBOSS/programs/html/translation_group.html share/doc/EMBOSS/programs/html/trimseq.html +share/doc/EMBOSS/programs/html/utilities_group.html +share/doc/EMBOSS/programs/html/utilities_help_group.html +share/doc/EMBOSS/programs/html/utilities_keyword_search_group.html share/doc/EMBOSS/programs/html/vectorstrip.html share/doc/EMBOSS/programs/html/water.html share/doc/EMBOSS/programs/html/wobble.html share/doc/EMBOSS/programs/html/wordcount.html share/doc/EMBOSS/programs/html/wordmatch.html share/doc/EMBOSS/programs/html/wossname.html -share/doc/EMBOSS/programs/text/Makefile -share/doc/EMBOSS/programs/text/Makefile.am -share/doc/EMBOSS/programs/text/Makefile.in -share/doc/EMBOSS/programs/text/Makefile.in.orig +share/doc/EMBOSS/programs/html/banana0.gif +share/doc/EMBOSS/programs/html/chaos0.gif +share/doc/EMBOSS/programs/html/cpgplot0.gif +share/doc/EMBOSS/programs/html/dotmatcher0.gif +share/doc/EMBOSS/programs/html/dottup0.gif +share/doc/EMBOSS/programs/html/emboss_icon.gif +share/doc/EMBOSS/programs/html/findkm0.gif +share/doc/EMBOSS/programs/html/isochore0.gif +share/doc/EMBOSS/programs/html/octanol0.gif +share/doc/EMBOSS/programs/html/pepinfo1.gif +share/doc/EMBOSS/programs/html/pepinfo2.gif +share/doc/EMBOSS/programs/html/pepnet0.gif +share/doc/EMBOSS/programs/html/pepwheel0.gif +share/doc/EMBOSS/programs/html/pepwindow0.gif +share/doc/EMBOSS/programs/html/pepwindowall0.gif +share/doc/EMBOSS/programs/html/plotorf0.gif +share/doc/EMBOSS/programs/html/polydot0.gif +share/doc/EMBOSS/programs/html/prettyplot3.gif +share/doc/EMBOSS/programs/html/prettyplot4.gif +share/doc/EMBOSS/programs/html/syco0.gif +share/doc/EMBOSS/programs/html/syco1.gif +share/doc/EMBOSS/programs/html/tmap0.gif +share/doc/EMBOSS/programs/html/wobble0.gif +share/doc/EMBOSS/programs/text/SITE-DIRECTED.txt share/doc/EMBOSS/programs/text/antigenic.txt share/doc/EMBOSS/programs/text/backtranseq.txt share/doc/EMBOSS/programs/text/banana.txt +share/doc/EMBOSS/programs/text/btwisted.txt share/doc/EMBOSS/programs/text/chaos.txt share/doc/EMBOSS/programs/text/checktrans.txt share/doc/EMBOSS/programs/text/chips.txt @@ -283,6 +345,7 @@ share/doc/EMBOSS/programs/text/dbifasta.txt share/doc/EMBOSS/programs/text/dbiflat.txt share/doc/EMBOSS/programs/text/dbigcg.txt share/doc/EMBOSS/programs/text/descseq.txt +share/doc/EMBOSS/programs/text/iep.txt share/doc/EMBOSS/programs/text/diffseq.txt share/doc/EMBOSS/programs/text/digest.txt share/doc/EMBOSS/programs/text/dotmatcher.txt @@ -305,7 +368,6 @@ share/doc/EMBOSS/programs/text/garnier.txt share/doc/EMBOSS/programs/text/geecee.txt share/doc/EMBOSS/programs/text/getorf.txt share/doc/EMBOSS/programs/text/helixturnhelix.txt -share/doc/EMBOSS/programs/text/iep.txt share/doc/EMBOSS/programs/text/infoseq.txt share/doc/EMBOSS/programs/text/isochore.txt share/doc/EMBOSS/programs/text/lindna.txt @@ -382,15 +444,15 @@ share/doc/EMBOSS/programs/text/wobble.txt share/doc/EMBOSS/programs/text/wordcount.txt share/doc/EMBOSS/programs/text/wordmatch.txt share/doc/EMBOSS/programs/text/wossname.txt -share/doc/EMBOSS/tutorials/Makefile -share/doc/EMBOSS/tutorials/Makefile.am -share/doc/EMBOSS/tutorials/Makefile.in -share/doc/EMBOSS/tutorials/Makefile.in.orig +share/doc/EMBOSS/tutorials/biblio.bib +share/doc/EMBOSS/tutorials/emboss_tutorial.tex +share/doc/EMBOSS/tutorials/dottup.ps +share/doc/EMBOSS/tutorials/pepinfo1.ps +share/doc/EMBOSS/tutorials/pepinfo2.ps +share/doc/EMBOSS/tutorials/plotorf.ps +share/doc/EMBOSS/tutorials/tmap.ps share/EMBOSS/plstnd5.fnt share/EMBOSS/plxtnd5.fnt -share/EMBOSS/acd/Makefile -share/EMBOSS/acd/Makefile.am -share/EMBOSS/acd/Makefile.in share/EMBOSS/acd/ajbad.acd share/EMBOSS/acd/ajfeatest.acd share/EMBOSS/acd/ajtest.acd @@ -398,13 +460,13 @@ share/EMBOSS/acd/ajtest2.acd share/EMBOSS/acd/antigenic.acd share/EMBOSS/acd/backtranseq.acd share/EMBOSS/acd/banana.acd +share/EMBOSS/acd/btwisted.acd share/EMBOSS/acd/chaos.acd share/EMBOSS/acd/checktrans.acd share/EMBOSS/acd/chips.acd share/EMBOSS/acd/cirdna.acd share/EMBOSS/acd/cluster.acd share/EMBOSS/acd/codcmp.acd -share/EMBOSS/acd/codes.english share/EMBOSS/acd/complex.acd share/EMBOSS/acd/compseq.acd share/EMBOSS/acd/cpgplot.acd @@ -429,13 +491,14 @@ share/EMBOSS/acd/dotpath.acd share/EMBOSS/acd/dottup.acd share/EMBOSS/acd/dreg.acd share/EMBOSS/acd/einverted.acd -share/EMBOSS/acd/emboss.default share/EMBOSS/acd/embossdata.acd share/EMBOSS/acd/emma.acd +share/EMBOSS/acd/emowse.acd share/EMBOSS/acd/entrails.acd -share/EMBOSS/acd/etandem.acd share/EMBOSS/acd/equicktandem.acd share/EMBOSS/acd/est2genome.acd +share/EMBOSS/acd/etandem.acd +share/EMBOSS/acd/iep.acd share/EMBOSS/acd/extractseq.acd share/EMBOSS/acd/findkm.acd share/EMBOSS/acd/freak.acd @@ -447,7 +510,6 @@ share/EMBOSS/acd/geecee.acd share/EMBOSS/acd/getorf.acd share/EMBOSS/acd/helixturnhelix.acd share/EMBOSS/acd/histogramtest.acd -share/EMBOSS/acd/iep.acd share/EMBOSS/acd/infoseq.acd share/EMBOSS/acd/isochore.acd share/EMBOSS/acd/lindna.acd @@ -482,6 +544,7 @@ share/EMBOSS/acd/plplottest.acd share/EMBOSS/acd/polydot.acd share/EMBOSS/acd/preg.acd share/EMBOSS/acd/prettyplot.acd +share/EMBOSS/acd/tfm.acd share/EMBOSS/acd/prettyseq.acd share/EMBOSS/acd/prima.acd share/EMBOSS/acd/primersearch.acd @@ -522,7 +585,6 @@ share/EMBOSS/acd/stssearch.acd share/EMBOSS/acd/supermatcher.acd share/EMBOSS/acd/syco.acd share/EMBOSS/acd/testplot.acd -share/EMBOSS/acd/tfm.acd share/EMBOSS/acd/textsearch.acd share/EMBOSS/acd/tfextract.acd share/EMBOSS/acd/tfscan.acd @@ -536,6 +598,8 @@ share/EMBOSS/acd/wobble.acd share/EMBOSS/acd/wordcount.acd share/EMBOSS/acd/wordmatch.acd share/EMBOSS/acd/wossname.acd +share/EMBOSS/acd/codes.english +share/EMBOSS/acd/emboss.default share/EMBOSS/data/CODONS/Eacc.cut share/EMBOSS/data/CODONS/Eadenovirus5.cut share/EMBOSS/data/CODONS/Eadenovirus7.cut @@ -687,9 +751,6 @@ share/EMBOSS/data/CODONS/Eyscmt.cut share/EMBOSS/data/CODONS/Eysp.cut share/EMBOSS/data/CODONS/Ezebrafish.cut share/EMBOSS/data/CODONS/Ezma.cut -share/EMBOSS/data/CODONS/Makefile -share/EMBOSS/data/CODONS/Makefile.am -share/EMBOSS/data/CODONS/Makefile.in share/EMBOSS/data/REBASE/dummyfile share/EMBOSS/data/PRINTS/dummyfile share/EMBOSS/data/PROSITE/dummyfile @@ -782,13 +843,16 @@ share/EMBOSS/data/Eaa_acc_surface.dat share/EMBOSS/data/Eaa_hydropathy.dat share/EMBOSS/data/Eaa_properties.dat share/EMBOSS/data/Eamino.dat +share/EMBOSS/data/Eangles.dat share/EMBOSS/data/Eangles_tri.dat share/EMBOSS/data/Eantigenic.dat share/EMBOSS/data/Ebases.iub share/EMBOSS/data/Edayhoff.freq share/EMBOSS/data/Edna.melt +share/EMBOSS/data/Eenergy.dat share/EMBOSS/data/Efeatures.embl share/EMBOSS/data/Efeatures.gff +share/EMBOSS/data/Efreqs.dat share/EMBOSS/data/Ehth.dat share/EMBOSS/data/Ehth87.dat share/EMBOSS/data/Enakai.dat @@ -800,13 +864,7 @@ share/EMBOSS/data/Esig.pro share/EMBOSS/data/Etags.embl share/EMBOSS/data/Etags.gff share/EMBOSS/data/Ewhite-wimley.dat -share/EMBOSS/data/Makefile -share/EMBOSS/data/Makefile.am -share/EMBOSS/data/Makefile.in share/EMBOSS/data/embossre.equ -share/EMBOSS/test/data/Makefile -share/EMBOSS/test/data/Makefile.am -share/EMBOSS/test/data/Makefile.in share/EMBOSS/test/data/dna.acedb share/EMBOSS/test/data/dna.aln share/EMBOSS/test/data/dna.asn1 @@ -849,13 +907,6 @@ share/EMBOSS/test/data/prot.nbrf share/EMBOSS/test/data/prot.ncbi share/EMBOSS/test/data/prot.swiss share/EMBOSS/test/data/prot.text -share/EMBOSS/test/embl/Makefile -share/EMBOSS/test/embl/Makefile.am -share/EMBOSS/test/embl/Makefile.in -share/EMBOSS/test/embl/acnum.hit -share/EMBOSS/test/embl/acnum.trg -share/EMBOSS/test/embl/division.lkp -share/EMBOSS/test/embl/entrynam.idx share/EMBOSS/test/embl/est.dat share/EMBOSS/test/embl/hum1.dat share/EMBOSS/test/embl/inv.dat @@ -863,9 +914,10 @@ share/EMBOSS/test/embl/pro.dat share/EMBOSS/test/embl/rod.dat share/EMBOSS/test/embl/vrl.dat share/EMBOSS/test/embl/vrt.dat -share/EMBOSS/test/pir/Makefile -share/EMBOSS/test/pir/Makefile.am -share/EMBOSS/test/pir/Makefile.in +share/EMBOSS/test/embl/acnum.hit +share/EMBOSS/test/embl/acnum.trg +share/EMBOSS/test/embl/division.lkp +share/EMBOSS/test/embl/entrynam.idx share/EMBOSS/test/pir/pir1.header share/EMBOSS/test/pir/pir1.names share/EMBOSS/test/pir/pir1.numbers @@ -890,32 +942,23 @@ share/EMBOSS/test/pir/pir4.numbers share/EMBOSS/test/pir/pir4.offset share/EMBOSS/test/pir/pir4.ref share/EMBOSS/test/pir/pir4.seq -share/EMBOSS/test/swiss/Makefile -share/EMBOSS/test/swiss/Makefile.am -share/EMBOSS/test/swiss/Makefile.in +share/EMBOSS/test/swiss/seq.dat share/EMBOSS/test/swiss/acnum.hit share/EMBOSS/test/swiss/acnum.trg share/EMBOSS/test/swiss/division.lkp share/EMBOSS/test/swiss/entrynam.idx -share/EMBOSS/test/swiss/seq.dat -share/EMBOSS/test/swnew/Makefile -share/EMBOSS/test/swnew/Makefile.am -share/EMBOSS/test/swnew/Makefile.in +share/EMBOSS/test/swnew/new_seq.dat +share/EMBOSS/test/swnew/upd_ann.dat +share/EMBOSS/test/swnew/upd_seq.dat share/EMBOSS/test/swnew/acnum.hit share/EMBOSS/test/swnew/acnum.trg share/EMBOSS/test/swnew/division.lkp share/EMBOSS/test/swnew/entrynam.idx -share/EMBOSS/test/swnew/new_seq.dat -share/EMBOSS/test/swnew/upd_ann.dat -share/EMBOSS/test/swnew/upd_seq.dat -share/EMBOSS/test/wormpep/Makefile -share/EMBOSS/test/wormpep/Makefile.am -share/EMBOSS/test/wormpep/Makefile.in +share/EMBOSS/test/wormpep/wormpep share/EMBOSS/test/wormpep/acnum.hit share/EMBOSS/test/wormpep/acnum.trg share/EMBOSS/test/wormpep/division.lkp share/EMBOSS/test/wormpep/entrynam.idx -share/EMBOSS/test/wormpep/wormpep @dirrm share/doc/EMBOSS/manuals @dirrm share/doc/EMBOSS/programs/html @dirrm share/doc/EMBOSS/programs/text |