diff options
| -rw-r--r-- | math/jags/Makefile | 86 | ||||
| -rw-r--r-- | math/jags/distinfo | 8 | ||||
| -rw-r--r-- | math/jags/pkg-plist | 361 |
3 files changed, 47 insertions, 408 deletions
diff --git a/math/jags/Makefile b/math/jags/Makefile index e3b78d0ac07e..4795628e6c3b 100644 --- a/math/jags/Makefile +++ b/math/jags/Makefile @@ -7,49 +7,60 @@ # PORTNAME= mcmc-jags -PORTVERSION= 3.1.0 +PORTVERSION= 3.2.0 CATEGORIES= math MASTER_SITES= SF:1,2,3,4 -MASTER_SITE_SUBDIR= ${PORTNAME}/JAGS/${PORTVERSION:C|\..*|.x|}/Source/:1 \ - ${PORTNAME}/Examples/2.x/:2 \ - ${PORTNAME}/Manuals/2.x/:3 \ - ${PORTNAME}/Manuals/${PORTVERSION:C|\..*|.x|}/:4 -DISTFILES= ${DISTNAME:S/mcmc-//:U}${EXTRACT_SUFX}:1 -.if !defined(NOPORTDOCS) -DISTFILES+= classic-bugs.tar.gz:2 jags_developer_manual.pdf:3 \ - jags_installation_manual.pdf:4 jags_user_manual.pdf:4 -EXTRACT_ONLY= ${DISTNAME:S/mcmc-//:U}${EXTRACT_SUFX} +MASTER_SITE_SUBDIR= mcmc-jags/JAGS/${S}.x/Source/:1 \ + mcmc-jags/Examples/2.x/:2 \ + mcmc-jags/Manuals/2.x/:3 \ + mcmc-jags/Manuals/${S}.x/:4 +DISTFILES= JAGS-${PORTVERSION}${EXTRACT_SUFX}:1 +.if !defined(NOPORTDOCS) || make(makesum) +DISTFILES+= jags_developer_manual.pdf:3 jags_installation_manual.pdf:4 \ + jags_user_manual.pdf:4 +.endif +.if !defined(NOPORTEXAMPLES) || make(makesum) +DISTFILES+= classic-bugs.tar.gz:2 .endif +EXTRACT_ONLY= ${DISTFILES:M*[12]:C|:.*||} MAINTAINER= bf@FreeBSD.org COMMENT= Just Another Gibbs Sampler LICENSE= GPLv2 -OPTIONS= ATLAS "use ATLAS libraries instead of BLAS and LAPACK" off +GNU_CONFIGURE= yes +USE_BISON= build +USE_FORTRAN= yes +USE_LDCONFIG= yes DIST_SUBDIR= ${PORTNAME} -WRKSRC= ${WRKDIR}/${PKGNAME:S/mcmc-//:U} +WRKSRC= ${WRKDIR}/JAGS-${PORTVERSION} -GNU_CONFIGURE= yes CPPFLAGS+= -I${LOCALBASE}/include LDFLAGS+= -L${LOCALBASE}/lib -USE_FORTRAN= yes -USE_LDCONFIG= yes -USE_BISON= build -PLIST_SUB= MODULEVERSION=${PORTVERSION:C|\..*||} - MAN1= jags.1 +OPTIONS= ATLAS "use ATLAS libraries instead of BLAS and LAPACK" off +PLIST_SUB= MODULEVERSION=${S} +S= ${PORTVERSION:C|\..*||} .include <bsd.port.options.mk> .if defined(WITH_ATLAS) LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas -CONFIGURE_ARGS= --with-lapack="-lalapack -lcblas" --with-blas=-lf77blas +CONFIGURE_ARGS= --with-lapack="-lalapack -lptcblas" --with-blas="-lptf77blas" .else LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas LIB_DEPENDS+= lapack.4:${PORTSDIR}/math/lapack -CONFIGURE_ARGS= --with-lapack=-llapack --with-blas=-lblas +CONFIGURE_ARGS= --with-lapack="-llapack" --with-blas="-lblas" +.endif + +.if !defined(NOPORTDOCS) +PORTDOCS= ${DISTFILES:M*[34]:C|:.*||} +.endif + +.if !defined(NOPORTEXAMPLES) +PORTEXAMPLES= * .endif post-patch: @@ -62,42 +73,31 @@ post-patch: -e '/@WINDOWS_FALSE@.*rm -f jags/s/jags/mcmc-&/' \ -e '/@WINDOWS_FALSE@.*mv jags.tmp jags/s/jags/mcmc-&/2' \ ${WRKSRC}/src/terminal/Makefile.in +.if !defined(NOPORTEXAMPLES) + @${SED} -i '' -e '\|JAGS ?=|{s|jags|mcmc-&|;s|/usr/local|${PREFIX}|;}' \ + ${WRKDIR}/classic-bugs/vol[12]/Makefile +.endif post-install: .if !defined(NOPORTDOCS) @${MKDIR} ${DOCSDIR} -.for M in developer installation user - @${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/jags_${M}_manual.pdf \ - ${DOCSDIR} -.endfor + @cd ${_DISTDIR}; ${INSTALL_DATA} ${PORTDOCS} ${DOCSDIR} .endif .if !defined(NOPORTEXAMPLES) @${MKDIR} ${EXAMPLESDIR} - @( cd ${EXAMPLESDIR}; \ - ${PAX} -rzf ${DISTDIR}/${DIST_SUBDIR}/classic-bugs.tar.gz \ - -s ':^classic-bugs/*::' ) - @${SED} -i '' \ - -e '\|JAGS ?=|{s|jags|mcmc-&|;s|/usr/local|${PREFIX}|;}' \ - ${EXAMPLESDIR}/vol[12]/Makefile + @cd ${WRKDIR}/classic-bugs; ${COPYTREE_SHARE} \* ${EXAMPLESDIR} +.endif @${ECHO_MSG} "" @${CAT} ${PKGMESSAGE} @${ECHO_MSG} "" -.endif - .if defined(MAINTAINER_MODE) -RUN_DEPENDS+= ${LOCALBASE}/lib/R/library/coda/R/coda.rdb:${PORTSDIR}/math/R-cran-coda - -testclean: install -.for _i in 1 2 - @( cd ${EXAMPLESDIR}/vol${_i} && ${SETENV} ${MAKE_ENV} ${MAKE} \ - ${_MAKE_JOBS} ${MAKE_ARGS} clean) -.endfor +BUILD_DEPENDS+= ${LOCALBASE}/lib/R/library/coda/R/coda.rdb:${PORTSDIR}/math/R-cran-coda -regression-test test check: testclean -.for _i in 1 2 - @( cd ${EXAMPLESDIR}/vol${_i} && ${SETENV} ${MAKE_ENV} ${MAKE} \ - ${_MAKE_JOBS} ${MAKE_ARGS} check) +check test: install +.for i in 1 2 + cd ${WRKDIR}/classic-bugs/vol${i}; ${SETENV} ${MAKE_ENV} \ + ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} check .endfor .endif diff --git a/math/jags/distinfo b/math/jags/distinfo index e8e2c8014ed5..5967b70aa1b3 100644 --- a/math/jags/distinfo +++ b/math/jags/distinfo @@ -1,10 +1,10 @@ -SHA256 (mcmc-jags/JAGS-3.1.0.tar.gz) = 69ece562dbd09ad4b493ec0576e9951faf4e16e0ae78302752ef199dff3c4e0b -SIZE (mcmc-jags/JAGS-3.1.0.tar.gz) = 1609007 +SHA256 (mcmc-jags/JAGS-3.2.0.tar.gz) = 0c8060baf2b8d2e0687b23c190fa88bbbf0fbf0e66d53ef24832fd5c4a486dcf +SIZE (mcmc-jags/JAGS-3.2.0.tar.gz) = 1625178 SHA256 (mcmc-jags/classic-bugs.tar.gz) = ae6f9e25f00a3c2bf2d67c8b3fe040f937551ef75407ae0bd8cad5cbc3a8f768 SIZE (mcmc-jags/classic-bugs.tar.gz) = 81419 SHA256 (mcmc-jags/jags_developer_manual.pdf) = 6e7c707b94ffc931807198cc162e8b254859bb774695ae39ef1c1c175560259b SIZE (mcmc-jags/jags_developer_manual.pdf) = 71319 SHA256 (mcmc-jags/jags_installation_manual.pdf) = 4180b8cac5f05099f54bb93be8084802300d000df20c1b235bebda0c1fc8fc88 SIZE (mcmc-jags/jags_installation_manual.pdf) = 103315 -SHA256 (mcmc-jags/jags_user_manual.pdf) = 4aedff83e9f4d64c00fc374c16f25c877e97ea0cf407b8b5203cf48f2e943e16 -SIZE (mcmc-jags/jags_user_manual.pdf) = 229343 +SHA256 (mcmc-jags/jags_user_manual.pdf) = 1a82401d2283134c10f653430858ccd2f958f3c770a30d97640ccad0831e08a6 +SIZE (mcmc-jags/jags_user_manual.pdf) = 269033 diff --git a/math/jags/pkg-plist b/math/jags/pkg-plist index 2b18ec04f079..e7a048f902c1 100644 --- a/math/jags/pkg-plist +++ b/math/jags/pkg-plist @@ -99,367 +99,6 @@ lib/libjrmath.so lib/libjrmath.so.0 libdata/pkgconfig/jags.pc libexec/jags-terminal -%%PORTDOCS%%%%DOCSDIR%%/jags_developer_manual.pdf -%%PORTDOCS%%%%DOCSDIR%%/jags_installation_manual.pdf -%%PORTDOCS%%%%DOCSDIR%%/jags_user_manual.pdf -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/Rcheck.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/bench.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/R/check.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ReadMe -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/Makefile -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/ReadMe -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/bench-test1.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/bench-test2.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/bench-test3.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blocker-data.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blocker-init.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blocker.bug -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blockert-init.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blockert.bug -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blockht-data.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/blockht.bug -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/notest2.cmd -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/notest3.cmd -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/test1.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/blocker/test1.cmd -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/bench-test1.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/bones-data.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/bones-init.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/bones.bug -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/test1.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/bones/test1.cmd -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/bench-test1.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/dyes-data.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/dyes-init.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/dyes.bug -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/test1.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/dyes/test1.cmd -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench-test1.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/bench-test2.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil-data.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil-inits.R -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil2.bug -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/vol1/epil/epil3.bug 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