diff options
| -rw-r--r-- | graphics/Makefile | 1 | ||||
| -rw-r--r-- | graphics/amide/Makefile | 70 | ||||
| -rw-r--r-- | graphics/amide/distinfo | 2 | ||||
| -rw-r--r-- | graphics/amide/files/patch-configure | 53 | ||||
| -rw-r--r-- | graphics/amide/files/patch-src-dcmtk_interface.cc | 115 | ||||
| -rw-r--r-- | graphics/amide/files/patch-src-mpeg_encode.c | 11 | ||||
| -rw-r--r-- | graphics/amide/files/patch-src-ui_common.c | 11 | ||||
| -rw-r--r-- | graphics/amide/pkg-descr | 5 | ||||
| -rw-r--r-- | graphics/amide/pkg-plist | 60 |
9 files changed, 328 insertions, 0 deletions
diff --git a/graphics/Makefile b/graphics/Makefile index 1a923da9e06a..33ae92b65dc8 100644 --- a/graphics/Makefile +++ b/graphics/Makefile @@ -28,6 +28,7 @@ SUBDIR += allegrogl SUBDIR += alpng SUBDIR += amanith + SUBDIR += amide SUBDIR += ampasCTL SUBDIR += animorph SUBDIR += aoi diff --git a/graphics/amide/Makefile b/graphics/amide/Makefile new file mode 100644 index 000000000000..eda9ee284c36 --- /dev/null +++ b/graphics/amide/Makefile @@ -0,0 +1,70 @@ +# New ports collection makefile for: amide +# Date created: 8 Feb 2011 +# Whom: Guido Falsi <mad@madpilot.net> +# +# $FreeBSD$ +# + +PORTNAME= amide +PORTVERSION= 0.9.2 +CATEGORIES= graphics +MASTER_SITES= SF +EXTRACT_SUFX= .tgz + +MAINTAINER= mad@madpilot.net +COMMENT= Medical Imaging Data Examiner + +LICENSE= GPLv2 + +USE_GMAKE= yes +GNU_CONFIGURE= yes +MAKE_JOBS_UNSAFE= yes +USE_GETTEXT= yes +USE_GNOME= gtk20 libgnomecanvas libgnomeui libxml2 +INSTALLS_OMF= yes + +MAN1= amide.1 + +OPTIONS= XMEDCON "Use xmedcon" on \ + DCMTK "Use dcmtk" on \ + FFMPEG "Use ffmpeg" on \ + GSL "Use gsl" on + +.include <bsd.port.pre.mk> + +.if !defined(WITHOUT_XMEDCON) +LIB_DEPENDS+= mdc.2:${PORTSDIR}/graphics/xmedcon +CONFIGUE_ARGS+= --enable-libmdc +.else +CONFIGUE_ARGS+= --disable-libmdc +.endif + +.if !defined(WITHOUT_DCMTK) +LIB_DEPENDS+= dcmdata.3:${PORTSDIR}/devel/dcmtk +CONFIGUE_ARGS+= --enable-libdcmdata +.else +CONFIGUE_ARGS+= --disable-libdcmdata +.endif + +.if !defined(WITHOUT_FFMPEG) +LIB_DEPENDS+= avcodec.1:${PORTSDIR}/multimedia/ffmpeg +CONFIGUE_ARGS+= --enable-ffmpeg +.else +CONFIGUE_ARGS+= --disable-ffmpeg +.endif + +.if !defined(WITHOUT_GSL) +LIB_DEPENDS+= gsl.15:${PORTSDIR}/math/gsl +CONFIGUE_ARGS+= --enable-libgsl +.else +CONFIGUE_ARGS+= --disable-libgsl +.endif + +.if defined(WITHOUT_NLS) +CONFIGURE_ARGS+= --disable-nls +PLIST_SUB+= NLS='@comment ' +.else +PLIST_SUB+= NLS='' +.endif + +.include <bsd.port.post.mk> diff --git a/graphics/amide/distinfo b/graphics/amide/distinfo new file mode 100644 index 000000000000..ceb26aa09f7c --- /dev/null +++ b/graphics/amide/distinfo @@ -0,0 +1,2 @@ +SHA256 (amide-0.9.2.tgz) = bbe230b7aef3c65ef2014d561a09d97b96e50ec4f1a09c16b4de751974ff01be +SIZE (amide-0.9.2.tgz) = 1476952 diff --git a/graphics/amide/files/patch-configure b/graphics/amide/files/patch-configure new file mode 100644 index 000000000000..cdf7955e304e --- /dev/null +++ b/graphics/amide/files/patch-configure @@ -0,0 +1,53 @@ +--- configure.orig 2009-12-09 07:35:12.000000000 +0100 ++++ configure 2011-02-10 18:25:18.165872253 +0100 +@@ -17889,13 +17889,13 @@ + DATADIRNAME=share + else + CATOBJEXT=.mo +- DATADIRNAME=lib ++ DATADIRNAME=share + fi + + ;; + *) + CATOBJEXT=.mo +- DATADIRNAME=lib ++ DATADIRNAME=share + ;; + esac + fi +@@ -18684,12 +18684,12 @@ + if test "x$ac_cv_func_bind_textdomain_codeset" = x""yes; then + DATADIRNAME=share + else +- DATADIRNAME=lib ++ DATADIRNAME=share + fi + + ;; + *) +- DATADIRNAME=lib ++ DATADIRNAME=share + ;; + esac + fi +@@ -19625,7 +19625,7 @@ + $as_echo_n "(cached) " >&6 + else + ac_check_lib_save_LIBS=$LIBS +-LIBS="-ldcmdata -lofstd -lz -L/usr/local/dicom/lib -L/sw/lib $THREAD_LIBS $LIBS" ++LIBS="-ldcmdata -lofstd -loflog -lz -L/usr/local/lib $THREAD_LIBS $LIBS" + cat >conftest.$ac_ext <<_ACEOF + /* confdefs.h. */ + _ACEOF +@@ -20391,8 +20391,8 @@ + + if (test $enable_libdcmdata = yes) && (test $FOUND_DCMDATA = yes); then + echo "Compiling with DCMTK support for DICOM files" +- AMIDE_LIBDCMDATA_LIBS="-L/usr/local/dicom/lib -ldcmdata -lofstd -lz $THREAD_LIBS" +- AMIDE_LIBDCMDATA_CFLAGS="-I/usr/local/dicom/include/dcmtk/dcmdata -I/usr/local/dicom/include/dcmtk/ofstd -I/usr/local/dicom/include -I/usr/include/dcmtk/dcmdata -I/usr/local/include/dcmtk/ofstd -I/sw/include/dcmtk/dcmdata -I/sw/include/dcmtk/ofstd -I/sw/include/dcmtk" ++ AMIDE_LIBDCMDATA_LIBS="-L/usr/local/lib -ldcmdata -lofstd -loflog -lz $THREAD_LIBS" ++ AMIDE_LIBDCMDATA_CFLAGS="-I/usr/local/include" + + + diff --git a/graphics/amide/files/patch-src-dcmtk_interface.cc b/graphics/amide/files/patch-src-dcmtk_interface.cc new file mode 100644 index 000000000000..0d87608c69bc --- /dev/null +++ b/graphics/amide/files/patch-src-dcmtk_interface.cc @@ -0,0 +1,115 @@ +--- src/dcmtk_interface.cc.orig 2009-12-14 05:53:11.000000000 +0100 ++++ src/dcmtk_interface.cc 2011-02-11 10:59:18.612565854 +0100 +@@ -32,7 +32,7 @@ + #include <unistd.h> + #endif + #include "dcmtk_interface.h" +-#include "dcddirif.h" /* for class DicomDirInterface */ ++#include "dcmtk/dcmdata/dcddirif.h" /* for class DicomDirInterface */ + #include <dirent.h> + #include <sys/stat.h> + #include "amitk_data_set_DOUBLE_0D_SCALING.h" +@@ -44,7 +44,8 @@ + #undef PACKAGE_STRING + #undef PACKAGE_TARNAME + #undef PACKAGE_VERSION +-#include <dctk.h> ++#include "amide_config.h" ++#include <dcmtk/dcmdata/dctk.h> + //#include <dcostrmb.h> + const gchar * dcmtk_version = OFFIS_DCMTK_VERSION; + +@@ -188,7 +189,7 @@ + } + dim.y = return_uint16; + +- if (dcm_dataset->findAndGetUint16(DCM_Planes, return_uint16).bad()) ++ if (dcm_dataset->findAndGetUint16(DCM_RETIRED_Planes, return_uint16).bad()) + dim.z = 1; + else + dim.z = return_uint16; +@@ -352,7 +353,7 @@ + if (dcm_dataset->findAndGetString(DCM_PatientID, return_str, OFTrue).good()) + amitk_data_set_set_subject_id(ds, return_str); + +- if (dcm_dataset->findAndGetFloat64(DCM_PatientsWeight, return_float64).good()) { ++ if (dcm_dataset->findAndGetFloat64(DCM_PatientWeight, return_float64).good()) { + amitk_data_set_set_subject_weight(ds, return_float64); + amitk_data_set_set_displayed_weight_unit(ds, AMITK_WEIGHT_UNIT_KILOGRAM); + } +@@ -429,7 +430,7 @@ + } + } + +- if (dcm_dataset->findAndGetString(DCM_PatientsName, return_str, OFTrue).good()) { ++ if (dcm_dataset->findAndGetString(DCM_PatientName, return_str, OFTrue).good()) { + if (AMITK_OBJECT_NAME(ds) == NULL) + amitk_object_set_name(AMITK_OBJECT(ds), return_str); + amitk_data_set_set_subject_name(ds, return_str); +@@ -495,7 +496,7 @@ + } + } + +- if (dcm_dataset->findAndGetString(DCM_PatientsBirthDate, return_str, OFTrue).good()) ++ if (dcm_dataset->findAndGetString(DCM_PatientBirthDate, return_str, OFTrue).good()) + amitk_data_set_set_subject_dob(ds, return_str); + + /* because of how the dicom coordinates are setup, after reading in the patient slices, +@@ -1257,7 +1258,7 @@ + if (return_str != NULL) + info->patient_id = g_strdup(return_str); + +- dcm_dataset->findAndGetString(DCM_PatientsName, return_str, OFTrue); ++ dcm_dataset->findAndGetString(DCM_PatientName, return_str, OFTrue); + if (return_str != NULL) + info->patient_name = g_strdup(return_str); + +@@ -1537,7 +1538,7 @@ + + /* go through the whole directory */ + while ((patient_record = dcm_root_record->nextSub(patient_record)) != NULL) { +- patient_record->findAndGetString(DCM_PatientsName, record_name[0]); ++ patient_record->findAndGetString(DCM_PatientName, record_name[0]); + patient_record->findAndGetString(DCM_PatientID, patient_id, OFTrue); + + +@@ -1802,8 +1803,9 @@ + } + + #ifdef AMIDE_DEBUG +- dcm_dir.enableVerboseMode(TRUE); +- dcm_dir.setLogStream(&ofConsole); ++// These are not defined in the latest dcmtk and could not find substitutes. ++// dcm_dir.enableVerboseMode(TRUE); ++// dcm_dir.setLogStream(&ofConsole); + #endif + + /* create the DICOMDIR, unless already made in which case we'll append to it */ +@@ -1905,15 +1907,15 @@ + + /* other stuff */ + if (AMITK_DATA_SET_SUBJECT_NAME(ds) != NULL) +- insert_str(dcm_ds,DCM_PatientsName, AMITK_DATA_SET_SUBJECT_NAME(ds)); ++ insert_str(dcm_ds,DCM_PatientName, AMITK_DATA_SET_SUBJECT_NAME(ds)); + if (AMITK_DATA_SET_SUBJECT_ID(ds) != NULL) + insert_str(dcm_ds,DCM_PatientID, AMITK_DATA_SET_SUBJECT_ID(ds)); + if (AMITK_DATA_SET_SUBJECT_DOB(ds) != NULL) +- insert_str(dcm_ds,DCM_PatientsBirthDate, AMITK_DATA_SET_SUBJECT_DOB(ds)); ++ insert_str(dcm_ds,DCM_PatientBirthDate, AMITK_DATA_SET_SUBJECT_DOB(ds)); + if (AMITK_OBJECT_NAME(ds) != NULL) + insert_str(dcm_ds,DCM_StudyDescription, AMITK_OBJECT_NAME(ds)); + insert_double(dcm_ds,DCM_RadionuclideTotalDose, AMITK_DATA_SET_INJECTED_DOSE(ds)); +- insert_double(dcm_ds,DCM_PatientsWeight, AMITK_DATA_SET_SUBJECT_WEIGHT(ds)); ++ insert_double(dcm_ds,DCM_PatientWeight, AMITK_DATA_SET_SUBJECT_WEIGHT(ds)); + + switch(AMITK_DATA_SET_SUBJECT_ORIENTATION(ds)) { + case AMITK_SUBJECT_ORIENTATION_SUPINE_HEADFIRST: +@@ -1949,7 +1951,7 @@ + case AMITK_MODALITY_PET: + insert_str(dcm_ds,DCM_Modality, "PT"); + dcm_metainfo->putAndInsertString(DCM_MediaStorageSOPClassUID, +- UID_PETImageStorage); ++ UID_EnhancedPETImageStorage); + break; + case AMITK_MODALITY_SPECT: + insert_str(dcm_ds,DCM_Modality, "ST"); diff --git a/graphics/amide/files/patch-src-mpeg_encode.c b/graphics/amide/files/patch-src-mpeg_encode.c new file mode 100644 index 000000000000..459bc2b90310 --- /dev/null +++ b/graphics/amide/files/patch-src-mpeg_encode.c @@ -0,0 +1,11 @@ +--- src/mpeg_encode.c.orig 2009-11-16 07:55:52.000000000 +0100 ++++ src/mpeg_encode.c 2011-02-08 16:18:47.640994869 +0100 +@@ -141,7 +141,7 @@ + /* -------------------------------------------------------- */ + #ifdef AMIDE_FFMPEG_SUPPORT + +-#include <ffmpeg/libavcodec/avcodec.h> ++#include <libavcodec/avcodec.h> + + + typedef struct { diff --git a/graphics/amide/files/patch-src-ui_common.c b/graphics/amide/files/patch-src-ui_common.c new file mode 100644 index 000000000000..af9ac8ccae24 --- /dev/null +++ b/graphics/amide/files/patch-src-ui_common.c @@ -0,0 +1,11 @@ +--- src/ui_common.c.orig 2009-11-16 06:00:11.000000000 +0100 ++++ src/ui_common.c 2011-02-08 16:21:18.283127798 +0100 +@@ -46,7 +46,7 @@ + #include <medcon.h> + #endif + #ifdef AMIDE_FFMPEG_SUPPORT +-#include <ffmpeg/libavcodec/avcodec.h> ++#include <libavcodec/avcodec.h> + #endif + #ifdef AMIDE_LIBFAME_SUPPORT + #include <fame_version.h> diff --git a/graphics/amide/pkg-descr b/graphics/amide/pkg-descr new file mode 100644 index 000000000000..e93cdd546fb6 --- /dev/null +++ b/graphics/amide/pkg-descr @@ -0,0 +1,5 @@ +AMIDE is a competely free tool for viewing, analyzing, and registering +volumetric medical imaging data sets. It's been written on top of GTK+, and runs +on any system that supports this toolkit. + +WWW: http://amide.sourceforge.net diff --git a/graphics/amide/pkg-plist b/graphics/amide/pkg-plist new file mode 100644 index 000000000000..e967f4b89096 --- /dev/null +++ b/graphics/amide/pkg-plist @@ -0,0 +1,60 @@ +bin/amide +share/applications/amide.desktop +share/gnome/help/amide/C/amide.xml +share/gnome/help/amide/C/figures/amide_main_window.png +share/gnome/help/amide/C/figures/study_tree.png +share/gnome/help/amide/C/legal.xml +share/gnome/help/amide/es/amide.xml +share/gnome/help/amide/es/figures/amide_main_window.png +share/gnome/help/amide/es/figures/study_tree.png +share/gnome/help/amide/es/legal.xml +share/gtk-doc/html/amitk/AmitkWidgets.html +share/gtk-doc/html/amitk/SpaceObjects.html +share/gtk-doc/html/amitk/amitk-AmitkCanvas.html +share/gtk-doc/html/amitk/amitk-AmitkColorTableMenu.html +share/gtk-doc/html/amitk/amitk-AmitkDataSet.html +share/gtk-doc/html/amitk/amitk-AmitkFiducialMark.html +share/gtk-doc/html/amitk/amitk-AmitkLineProfile.html +share/gtk-doc/html/amitk/amitk-AmitkObject.html +share/gtk-doc/html/amitk/amitk-AmitkObjectDialog.html +share/gtk-doc/html/amitk/amitk-AmitkProgressDialog.html +share/gtk-doc/html/amitk/amitk-AmitkRawData.html +share/gtk-doc/html/amitk/amitk-AmitkRoi.html +share/gtk-doc/html/amitk/amitk-AmitkSpace.html +share/gtk-doc/html/amitk/amitk-AmitkSpaceEdit.html +share/gtk-doc/html/amitk/amitk-AmitkStudy.html +share/gtk-doc/html/amitk/amitk-AmitkThresholdsDialog.html +share/gtk-doc/html/amitk/amitk-AmitkTreeView.html +share/gtk-doc/html/amitk/amitk-AmitkVolume.html +share/gtk-doc/html/amitk/amitk-amitk-canvas-object.html +share/gtk-doc/html/amitk/amitk-amitk-color-table.html +share/gtk-doc/html/amitk/amitk-amitk-common.html +share/gtk-doc/html/amitk/amitk-amitk-filter.html +share/gtk-doc/html/amitk/amitk-amitk-point.html +share/gtk-doc/html/amitk/amitk-amitk-type.html +share/gtk-doc/html/amitk/amitk-theory.html +share/gtk-doc/html/amitk/amitk.devhelp +share/gtk-doc/html/amitk/amitk.devhelp2 +share/gtk-doc/html/amitk/amitk_base.html +share/gtk-doc/html/amitk/amitk_intro.html +share/gtk-doc/html/amitk/amitk_objects.html +share/gtk-doc/html/amitk/ch01.html +share/gtk-doc/html/amitk/home.png +share/gtk-doc/html/amitk/index.html +share/gtk-doc/html/amitk/index.sgml +share/gtk-doc/html/amitk/left.png +share/gtk-doc/html/amitk/right.png +share/gtk-doc/html/amitk/style.css +share/gtk-doc/html/amitk/up.png +%%NLS%%share/locale/zh_CN/LC_MESSAGES/amide.mo +share/omf/amide/amide-C.omf +share/omf/amide/amide-es.omf +share/pixmaps/amide_logo.png +share/pixmaps/amide_file_logo.png +@dirrm share/gtk-doc/html/amitk +@dirrm share/gnome/help/amide/es/figures +@dirrm share/gnome/help/amide/es +@dirrm share/gnome/help/amide/C/figures +@dirrm share/gnome/help/amide/C +@dirrm share/gnome/help/amide +@dirrm share/omf/amide |