diff options
| -rw-r--r-- | biology/paml/Makefile | 8 | ||||
| -rw-r--r-- | biology/paml/distinfo | 2 | ||||
| -rw-r--r-- | biology/paml/files/patch-aa | 11 | ||||
| -rw-r--r-- | biology/paml/files/patch-ab | 11 |
4 files changed, 5 insertions, 27 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile index 5b792993ec00..e819eb5b88fd 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -6,15 +6,15 @@ # PORTNAME= paml -PORTVERSION= 3.01 +PORTVERSION= 3.03 CATEGORIES= biology MASTER_SITES= ftp://abacus.gene.ucl.ac.uk/pub/paml/ -DISTNAME= paml3.0a +DISTNAME= paml3.0c EXTRACT_SUFX= .tar.Z MAINTAINER= dbader@eece.unm.edu -NO_WRKSUBDIR= yes +WRKSRC= ${WRKDIR}/${DISTNAME}/src BINARIES= baseml basemlg chi2 codeml codemlsites evolver mcmctree \ pamp yn00 @@ -25,7 +25,7 @@ do-install: .endfor .if !defined(NOPORTDOCS) ${MKDIR} ${PREFIX}/share/doc/${PORTNAME} - ${INSTALL_DATA} ${WRKSRC}/pamlDOC.pdf \ + ${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/pamlDOC.pdf \ ${PREFIX}/share/doc/${PORTNAME} .endif diff --git a/biology/paml/distinfo b/biology/paml/distinfo index fd6ef9254a30..0821c8ddf6da 100644 --- a/biology/paml/distinfo +++ b/biology/paml/distinfo @@ -1 +1 @@ -MD5 (paml3.0a.tar.Z) = 53ce654a8173407a3db278d106deb115 +MD5 (paml3.0c.tar.Z) = cfff48036c3e2520967f32c7626e21f3 diff --git a/biology/paml/files/patch-aa b/biology/paml/files/patch-aa deleted file mode 100644 index 4a5d5b546775..000000000000 --- a/biology/paml/files/patch-aa +++ /dev/null @@ -1,11 +0,0 @@ ---- Makefile.orig Sun Mar 12 20:49:36 2000 -+++ Makefile Fri Jul 7 06:32:33 2000 -@@ -1,7 +1,7 @@ - PRGS = baseml codeml codemlsites basemlg pamp evolver mcmctree yn00 chi2 - CC = cc # cc, gcc, cl - --CFLAGS = -fast -+CFLAGS += -O3 - - #CFLAGS = -w0 -warnprotos -newc -std -fast - #CFLAGS = -g -w0 -warnprotos -newc -std -edit1 # diff --git a/biology/paml/files/patch-ab b/biology/paml/files/patch-ab deleted file mode 100644 index b0146af88038..000000000000 --- a/biology/paml/files/patch-ab +++ /dev/null @@ -1,11 +0,0 @@ ---- evolver.c-orig Thu Jun 15 14:42:52 2000 -+++ evolver.c Fri Jul 7 06:40:09 2000 -@@ -63,7 +63,7 @@ - static double Qfactor=-1, Qrates[5]; /* Qrates[] hold kappa's for nucleotides */ - - --void main(int argc, char*argv[]) -+main(int argc, char*argv[]) - { - char *MCctlf=NULL, outf[]="evolver.out"; - int i, option=6, ntree=1,rooted, BD=0; |