diff options
| -rw-r--r-- | biology/crux/Makefile | 4 | ||||
| -rw-r--r-- | biology/crux/distinfo | 6 | ||||
| -rw-r--r-- | biology/crux/pkg-plist | 45 |
3 files changed, 29 insertions, 26 deletions
diff --git a/biology/crux/Makefile b/biology/crux/Makefile index 8223812249a2..f483a50b21ef 100644 --- a/biology/crux/Makefile +++ b/biology/crux/Makefile @@ -6,8 +6,8 @@ # PORTNAME= crux -PORTVERSION= 1.1.0 -PORTREVISION= 1 +PORTVERSION= 1.2.0 +PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= http://www.canonware.com/download/Crux/ diff --git a/biology/crux/distinfo b/biology/crux/distinfo index e7efa757dd20..1d83b0201d63 100644 --- a/biology/crux/distinfo +++ b/biology/crux/distinfo @@ -1,3 +1,3 @@ -MD5 (crux-1.1.0.tar.bz2) = ffafa44e7b3886d2a86168da23cf63a5 -SHA256 (crux-1.1.0.tar.bz2) = 0f3be31d426a2c94c30213371aa1320a1c711a2870b78bace6f5eba8b01a93da -SIZE (crux-1.1.0.tar.bz2) = 1188496 +MD5 (crux-1.2.0.tar.bz2) = 07e3a38e82f17d7ae5caea1be622bb14 +SHA256 (crux-1.2.0.tar.bz2) = 11f677e8bf62db69e75271670ea50fb5a23c8a2c526fa9d16ccf2e736e5212c5 +SIZE (crux-1.2.0.tar.bz2) = 1187274 diff --git a/biology/crux/pkg-plist b/biology/crux/pkg-plist index 146a86412c1c..f95c872254d3 100644 --- a/biology/crux/pkg-plist +++ b/biology/crux/pkg-plist @@ -2,60 +2,63 @@ bin/crux bin/redpoint bin/MrRogers -%%PYTHON_SITELIBDIR%%/Crux/__init__.py -%%PYTHON_SITELIBDIR%%/Crux/__init__.so +%%PYTHON_SITELIBDIR%%/Crux/CTMatrix.so %%PYTHON_SITELIBDIR%%/Crux/Character.so %%PYTHON_SITELIBDIR%%/Crux/Config.py %%PYTHON_SITELIBDIR%%/Crux/Config.pyo %%PYTHON_SITELIBDIR%%/Crux/Copying.py %%PYTHON_SITELIBDIR%%/Crux/Copying.pyo -%%PYTHON_SITELIBDIR%%/Crux/CTMatrix.so +%%PYTHON_SITELIBDIR%%/Crux/DistMatrix/Nj.so %%PYTHON_SITELIBDIR%%/Crux/DistMatrix/__init__.py %%PYTHON_SITELIBDIR%%/Crux/DistMatrix/__init__.so -%%PYTHON_SITELIBDIR%%/Crux/DistMatrix/Nj.so %%PYTHON_SITELIBDIR%%/Crux/Fasta.so -%%PYTHON_SITELIBDIR%%/Crux/Mc3/__init__.py -%%PYTHON_SITELIBDIR%%/Crux/Mc3/__init__.so %%PYTHON_SITELIBDIR%%/Crux/Mc3/Chain.so %%PYTHON_SITELIBDIR%%/Crux/Mc3/Post.so +%%PYTHON_SITELIBDIR%%/Crux/Mc3/__init__.py +%%PYTHON_SITELIBDIR%%/Crux/Mc3/__init__.so %%PYTHON_SITELIBDIR%%/Crux/Newick.so %%PYTHON_SITELIBDIR%%/Crux/Taxa.so -%%PYTHON_SITELIBDIR%%/Crux/Tree/__init__.py -%%PYTHON_SITELIBDIR%%/Crux/Tree/__init__.so %%PYTHON_SITELIBDIR%%/Crux/Tree/Bipart.so %%PYTHON_SITELIBDIR%%/Crux/Tree/Lik.so %%PYTHON_SITELIBDIR%%/Crux/Tree/Sumt.so -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/__init__.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Character.pxd +%%PYTHON_SITELIBDIR%%/Crux/Tree/__init__.py +%%PYTHON_SITELIBDIR%%/Crux/Tree/__init__.so %%PYTHON_SITELIBDIR%%/Crux/include/Crux/CTMatrix.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Cx.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/CxMath.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/CxMat.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/CxNewickLexer.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/CxRi.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/DistMatrix/__init__.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/DistMatrix/CxDistMatrixLexer.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Character.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/CxMath.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/CxMat.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/CxNewickLexer.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/CxRi.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/Cx.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/DistMatrix/CxDistMatrixLexer.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/Tree/CxLik.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/DistMatrix/Nj.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/DistMatrix/__init__.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Fasta.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3/__init__.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3/Chain.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3/Post.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3/__init__.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Newick.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/SFMT/SFMT.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Taxa.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/__init__.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/Bipart.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/CxLik.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/Lik.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/Sumt.pxd -%%PYTHON_SITELIBDIR%%/Crux/include/Crux/libm.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/__init__.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/__init__.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/libc.pxd +%%PYTHON_SITELIBDIR%%/Crux/include/Crux/libm.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Parsing.pxd +%%PYTHON_SITELIBDIR%%/Crux/__init__.py +%%PYTHON_SITELIBDIR%%/Crux/__init__.so %%PYTHON_SITELIBDIR%%/Parsing.so share/Crux/lib/libCx.so share/Crux/parsers/Fasta.log share/Crux/parsers/Fasta.pickle @dirrm %%PYTHON_SITELIBDIR%%/Crux/DistMatrix +@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/DistMatrix +@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/Tree +@dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux @dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/DistMatrix @dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3 @dirrm %%PYTHON_SITELIBDIR%%/Crux/include/Crux/SFMT |