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-rw-r--r--astro/R-cran-maptools/Makefile2
-rw-r--r--converters/R-cran-RJSONIO/Makefile1
-rw-r--r--databases/R-cran-DBI/Makefile2
-rw-r--r--databases/R-cran-RMySQL/Makefile2
-rw-r--r--devel/R-cran-bitops/Makefile2
-rw-r--r--devel/R-cran-caret/Makefile1
-rw-r--r--devel/R-cran-foreach/Makefile2
-rw-r--r--devel/R-cran-iterators/Makefile2
-rw-r--r--devel/R-cran-itertools/Makefile2
-rw-r--r--devel/R-cran-plyr/Makefile2
-rw-r--r--devel/R-cran-proto/Makefile2
-rw-r--r--devel/R-cran-reshape/Makefile2
-rw-r--r--finance/R-cran-RFinanceYJ/Makefile2
-rw-r--r--finance/R-cran-gmm/Makefile2
-rw-r--r--ftp/R-cran-RCurl/Makefile1
-rw-r--r--graphics/R-cran-RColorBrewer/Makefile2
-rw-r--r--graphics/R-cran-colorspace/Makefile2
-rw-r--r--graphics/R-cran-diagram/Makefile2
-rw-r--r--graphics/R-cran-ggplot2/Makefile2
-rw-r--r--graphics/R-cran-shape/Makefile2
-rw-r--r--math/R-cran-RSvgDevice/Makefile2
-rw-r--r--math/R-cran-SuppDists/Makefile2
-rw-r--r--math/R-cran-Zelig/Makefile1
-rw-r--r--math/R-cran-car/Makefile1
-rw-r--r--math/R-cran-coda/Makefile1
-rw-r--r--math/R-cran-deldir/Makefile1
-rw-r--r--math/R-cran-gpclib/Makefile2
-rw-r--r--math/R-cran-inline/Makefile2
-rw-r--r--math/R-cran-mvtnorm/Makefile2
-rw-r--r--math/R-cran-psych/Makefile2
-rw-r--r--math/R-cran-sandwich/Makefile2
-rw-r--r--math/R-cran-sm/Makefile2
-rw-r--r--math/R-cran-sp/Makefile7
-rw-r--r--math/R-cran-sp/distinfo4
-rw-r--r--math/R-cran-spdep/Makefile1
-rw-r--r--math/R-cran-xts/Makefile2
-rw-r--r--math/R-cran-zoo/Makefile1
-rw-r--r--math/R/Makefile32
-rw-r--r--math/R/distinfo4
-rw-r--r--math/R/files/patch-doc__manual__refman.top33
-rw-r--r--math/R/pkg-plist302
-rw-r--r--math/ess/Makefile2
-rw-r--r--math/p5-Statistics-R/Makefile1
-rw-r--r--math/rkward-kde4/Makefile1
-rw-r--r--math/rkward-kde4/pkg-plist1
-rw-r--r--math/rkward/Makefile2
-rw-r--r--math/rkward/pkg-plist2
-rw-r--r--math/rpy/Makefile2
-rw-r--r--math/rpy/pkg-plist2
-rw-r--r--math/rpy2/Makefile1
-rw-r--r--net/R-cran-twitteR/Makefile1
-rw-r--r--science/R-cran-AMORE/Makefile2
-rw-r--r--science/R-cran-DCluster/Makefile2
-rw-r--r--science/R-cran-Epi/Makefile2
-rw-r--r--science/R-cran-bayesm/Makefile2
-rw-r--r--science/R-cran-eco/Makefile2
-rw-r--r--security/R-cran-ROAuth/Makefile2
-rw-r--r--security/R-cran-digest/Makefile2
-rw-r--r--textproc/R-cran-XML/Makefile2
-rw-r--r--textproc/R-cran-xtable/Makefile1
-rw-r--r--www/R-cran-Rpad/Makefile2
-rw-r--r--www/R-cran-scrapeR/Makefile2
62 files changed, 294 insertions, 185 deletions
diff --git a/astro/R-cran-maptools/Makefile b/astro/R-cran-maptools/Makefile
index 86cbd56e6290..82a7140c4d8c 100644
--- a/astro/R-cran-maptools/Makefile
+++ b/astro/R-cran-maptools/Makefile
@@ -7,7 +7,7 @@
PORTNAME= maptools
DISTVERSION= 0.8-10
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= astro
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/converters/R-cran-RJSONIO/Makefile b/converters/R-cran-RJSONIO/Makefile
index 4705d738cb14..0c46a15f1c60 100644
--- a/converters/R-cran-RJSONIO/Makefile
+++ b/converters/R-cran-RJSONIO/Makefile
@@ -7,6 +7,7 @@
PORTNAME= RJSONIO
DISTVERSION= 0.96-0
+PORTREVISION= 1
CATEGORIES= converters
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/databases/R-cran-DBI/Makefile b/databases/R-cran-DBI/Makefile
index 4fa21ee537be..02b4df552979 100644
--- a/databases/R-cran-DBI/Makefile
+++ b/databases/R-cran-DBI/Makefile
@@ -7,7 +7,7 @@
PORTNAME= DBI
DISTVERSION= 0.2-5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/databases/R-cran-RMySQL/Makefile b/databases/R-cran-RMySQL/Makefile
index d32f142ccaa4..14348904c554 100644
--- a/databases/R-cran-RMySQL/Makefile
+++ b/databases/R-cran-RMySQL/Makefile
@@ -7,7 +7,7 @@
PORTNAME= RMySQL
DISTVERSION= 0.8-0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= databases
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/devel/R-cran-bitops/Makefile b/devel/R-cran-bitops/Makefile
index 86af4456977b..26eb7df88fc7 100644
--- a/devel/R-cran-bitops/Makefile
+++ b/devel/R-cran-bitops/Makefile
@@ -7,7 +7,7 @@
PORTNAME= bitops
DISTVERSION= 1.0-4.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/devel/R-cran-caret/Makefile b/devel/R-cran-caret/Makefile
index 778718cf337f..db5309e6e48a 100644
--- a/devel/R-cran-caret/Makefile
+++ b/devel/R-cran-caret/Makefile
@@ -7,6 +7,7 @@
PORTNAME= caret
DISTVERSION= 5.08-011
+PORTREVISION= 1
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/devel/R-cran-foreach/Makefile b/devel/R-cran-foreach/Makefile
index 9dbacd8bea37..2b20c371aeab 100644
--- a/devel/R-cran-foreach/Makefile
+++ b/devel/R-cran-foreach/Makefile
@@ -7,7 +7,7 @@
PORTNAME= foreach
PORTVERSION= 1.3.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/devel/R-cran-iterators/Makefile b/devel/R-cran-iterators/Makefile
index 3602b2368437..c2a4ca69bcf1 100644
--- a/devel/R-cran-iterators/Makefile
+++ b/devel/R-cran-iterators/Makefile
@@ -7,7 +7,7 @@
PORTNAME= iterators
PORTVERSION= 1.0.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/devel/R-cran-itertools/Makefile b/devel/R-cran-itertools/Makefile
index c8f5815d6284..eedf5b54c3af 100644
--- a/devel/R-cran-itertools/Makefile
+++ b/devel/R-cran-itertools/Makefile
@@ -7,7 +7,7 @@
PORTNAME= itertools
DISTVERSION= 0.1-1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/devel/R-cran-plyr/Makefile b/devel/R-cran-plyr/Makefile
index ecbf10e2fe97..c6df0123943c 100644
--- a/devel/R-cran-plyr/Makefile
+++ b/devel/R-cran-plyr/Makefile
@@ -7,7 +7,7 @@
PORTNAME= plyr
PORTVERSION= 1.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/devel/R-cran-proto/Makefile b/devel/R-cran-proto/Makefile
index 0db4e49fe0db..e612d869e66b 100644
--- a/devel/R-cran-proto/Makefile
+++ b/devel/R-cran-proto/Makefile
@@ -7,7 +7,7 @@
PORTNAME= proto
DISTVERSION= 0.3-9.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/devel/R-cran-reshape/Makefile b/devel/R-cran-reshape/Makefile
index 5d5fa805faf8..af7d6a809433 100644
--- a/devel/R-cran-reshape/Makefile
+++ b/devel/R-cran-reshape/Makefile
@@ -7,7 +7,7 @@
PORTNAME= reshape
PORTVERSION= 0.8.4
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= devel
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/finance/R-cran-RFinanceYJ/Makefile b/finance/R-cran-RFinanceYJ/Makefile
index 9efc82d5c190..ad4a167042b8 100644
--- a/finance/R-cran-RFinanceYJ/Makefile
+++ b/finance/R-cran-RFinanceYJ/Makefile
@@ -7,7 +7,7 @@
PORTNAME= RFinanceYJ
PORTVERSION= 0.1.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/finance/R-cran-gmm/Makefile b/finance/R-cran-gmm/Makefile
index 18acc45b8551..11d5b46177ff 100644
--- a/finance/R-cran-gmm/Makefile
+++ b/finance/R-cran-gmm/Makefile
@@ -7,7 +7,7 @@
PORTNAME= gmm
DISTVERSION= 1.3-8
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= finance
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/ftp/R-cran-RCurl/Makefile b/ftp/R-cran-RCurl/Makefile
index 0fd38e1ebbd7..83bf54a2be09 100644
--- a/ftp/R-cran-RCurl/Makefile
+++ b/ftp/R-cran-RCurl/Makefile
@@ -7,6 +7,7 @@
PORTNAME= RCurl
DISTVERSION= 1.7-0
+PORTREVISION= 1
CATEGORIES= ftp
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/graphics/R-cran-RColorBrewer/Makefile b/graphics/R-cran-RColorBrewer/Makefile
index de4f85206422..24fcb702a354 100644
--- a/graphics/R-cran-RColorBrewer/Makefile
+++ b/graphics/R-cran-RColorBrewer/Makefile
@@ -7,7 +7,7 @@
PORTNAME= RColorBrewer
DISTVERSION= 1.0-5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/graphics/R-cran-colorspace/Makefile b/graphics/R-cran-colorspace/Makefile
index e7596648bbc4..0cb073246d89 100644
--- a/graphics/R-cran-colorspace/Makefile
+++ b/graphics/R-cran-colorspace/Makefile
@@ -7,7 +7,7 @@
PORTNAME= colorspace
DISTVERSION= 1.1-0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/graphics/R-cran-diagram/Makefile b/graphics/R-cran-diagram/Makefile
index 03377554405d..cdaecd3dd642 100644
--- a/graphics/R-cran-diagram/Makefile
+++ b/graphics/R-cran-diagram/Makefile
@@ -7,7 +7,7 @@
PORTNAME= diagram
PORTVERSION= 1.5.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/graphics/R-cran-ggplot2/Makefile b/graphics/R-cran-ggplot2/Makefile
index 93117c9f8956..f423e9ac89f6 100644
--- a/graphics/R-cran-ggplot2/Makefile
+++ b/graphics/R-cran-ggplot2/Makefile
@@ -7,7 +7,7 @@
PORTNAME= ggplot2
PORTVERSION= 0.8.9
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/graphics/R-cran-shape/Makefile b/graphics/R-cran-shape/Makefile
index 956a0a1113e4..67e6622464af 100644
--- a/graphics/R-cran-shape/Makefile
+++ b/graphics/R-cran-shape/Makefile
@@ -7,7 +7,7 @@
PORTNAME= shape
PORTVERSION= 1.3.4
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-RSvgDevice/Makefile b/math/R-cran-RSvgDevice/Makefile
index c6763839aa30..35dcdfa49738 100644
--- a/math/R-cran-RSvgDevice/Makefile
+++ b/math/R-cran-RSvgDevice/Makefile
@@ -7,7 +7,7 @@
PORTNAME= RSvgDevice
PORTVERSION= 0.6.4.1
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= math
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-SuppDists/Makefile b/math/R-cran-SuppDists/Makefile
index ed32fa567f25..a9f07b128c4c 100644
--- a/math/R-cran-SuppDists/Makefile
+++ b/math/R-cran-SuppDists/Makefile
@@ -7,7 +7,7 @@
PORTNAME= SuppDists
DISTVERSION= 1.1-8
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
MASTER_SITES= ${MASTER_CRAN_SITES} \
http://r.research.att.com/benchmarks/:benchmark \
diff --git a/math/R-cran-Zelig/Makefile b/math/R-cran-Zelig/Makefile
index c38b240d26bd..6f9a18afb206 100644
--- a/math/R-cran-Zelig/Makefile
+++ b/math/R-cran-Zelig/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Zelig
DISTVERSION= 3.5.3
+PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-car/Makefile b/math/R-cran-car/Makefile
index 672eeabda3d5..348509acd0c9 100644
--- a/math/R-cran-car/Makefile
+++ b/math/R-cran-car/Makefile
@@ -7,6 +7,7 @@
PORTNAME= car
DISTVERSION= 2.0-11
+PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-coda/Makefile b/math/R-cran-coda/Makefile
index 251bbf2929a8..a37eb1d23e06 100644
--- a/math/R-cran-coda/Makefile
+++ b/math/R-cran-coda/Makefile
@@ -7,6 +7,7 @@
PORTNAME= coda
DISTVERSION= 0.14-6
+PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-deldir/Makefile b/math/R-cran-deldir/Makefile
index c1165f7a3753..800f05202b54 100644
--- a/math/R-cran-deldir/Makefile
+++ b/math/R-cran-deldir/Makefile
@@ -7,6 +7,7 @@
PORTNAME= deldir
DISTVERSION= 0.0-16
+PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-gpclib/Makefile b/math/R-cran-gpclib/Makefile
index d47b4ab9d892..29645dd52acd 100644
--- a/math/R-cran-gpclib/Makefile
+++ b/math/R-cran-gpclib/Makefile
@@ -7,7 +7,7 @@
PORTNAME= gpclib
DISTVERSION= 1.5-1
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-inline/Makefile b/math/R-cran-inline/Makefile
index 6cce7ae9f0ac..a20a4a30f46b 100644
--- a/math/R-cran-inline/Makefile
+++ b/math/R-cran-inline/Makefile
@@ -7,7 +7,7 @@
PORTNAME= inline
PORTVERSION= 0.3.8
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= math
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-mvtnorm/Makefile b/math/R-cran-mvtnorm/Makefile
index d303671b895b..ddf081e3e5d4 100644
--- a/math/R-cran-mvtnorm/Makefile
+++ b/math/R-cran-mvtnorm/Makefile
@@ -7,7 +7,7 @@
PORTNAME= mvtnorm
PORTVERSION= 0.9.96
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= math
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/math/R-cran-psych/Makefile b/math/R-cran-psych/Makefile
index efe63884f1f3..8232a42b5ba5 100644
--- a/math/R-cran-psych/Makefile
+++ b/math/R-cran-psych/Makefile
@@ -7,7 +7,7 @@
PORTNAME= psych
PORTVERSION= 1.0.94
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= math science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/math/R-cran-sandwich/Makefile b/math/R-cran-sandwich/Makefile
index db794678bb29..eaca011a1cc7 100644
--- a/math/R-cran-sandwich/Makefile
+++ b/math/R-cran-sandwich/Makefile
@@ -7,7 +7,7 @@
PORTNAME= sandwich
DISTVERSION= 2.2-8
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-sm/Makefile b/math/R-cran-sm/Makefile
index e0521428672f..f0eb12a2dbb3 100644
--- a/math/R-cran-sm/Makefile
+++ b/math/R-cran-sm/Makefile
@@ -7,7 +7,7 @@
PORTNAME= sm
DISTVERSION= 2.2-4.1
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-sp/Makefile b/math/R-cran-sp/Makefile
index f52f5a2c14a5..76a5c7fc4f76 100644
--- a/math/R-cran-sp/Makefile
+++ b/math/R-cran-sp/Makefile
@@ -6,15 +6,14 @@
#
PORTNAME= sp
-PORTVERSION= 0.9.78
-PORTREVISION= 3
+DISTVERSION= 0.9-91
CATEGORIES= math
-DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
+DISTNAME= ${PORTNAME}_${DISTVERSION}
MAINTAINER= wen@FreeBSD.org
COMMENT= R Classes and Methods for Spatial Data
-USE_R_MOD= yes
+USE_R_MOD= yes
R_MOD_AUTOPLIST= yes
.include <bsd.port.mk>
diff --git a/math/R-cran-sp/distinfo b/math/R-cran-sp/distinfo
index 73c541c4aad1..eb6df00ced12 100644
--- a/math/R-cran-sp/distinfo
+++ b/math/R-cran-sp/distinfo
@@ -1,2 +1,2 @@
-SHA256 (sp_0.9-78.tar.gz) = 9f805a5ae0acec9d449b65b62e8a496b7ac22f645918f5139e566b529eb5f549
-SIZE (sp_0.9-78.tar.gz) = 717610
+SHA256 (sp_0.9-91.tar.gz) = b4615518e726785fec237eb314a56491c671f2ae0121fca8ae9bc1ed7c224297
+SIZE (sp_0.9-91.tar.gz) = 596365
diff --git a/math/R-cran-spdep/Makefile b/math/R-cran-spdep/Makefile
index 4f88b2bd7aa2..5b1e31ec9795 100644
--- a/math/R-cran-spdep/Makefile
+++ b/math/R-cran-spdep/Makefile
@@ -7,6 +7,7 @@
PORTNAME= spdep
DISTVERSION= 0.5-41
+PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-xts/Makefile b/math/R-cran-xts/Makefile
index 2c34daec1eb5..72fa914398e3 100644
--- a/math/R-cran-xts/Makefile
+++ b/math/R-cran-xts/Makefile
@@ -7,7 +7,7 @@
PORTNAME= xts
DISTVERSION= 0.8-2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-zoo/Makefile b/math/R-cran-zoo/Makefile
index c893423d0f1a..329981992c7d 100644
--- a/math/R-cran-zoo/Makefile
+++ b/math/R-cran-zoo/Makefile
@@ -7,6 +7,7 @@
PORTNAME= zoo
DISTVERSION= 1.7-6
+PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R/Makefile b/math/R/Makefile
index 3925a905c5c3..84589d93198e 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -7,7 +7,7 @@
#
PORTNAME?= R
-PORTVERSION= 2.13.2
+PORTVERSION= 2.14.0
CATEGORIES= math lang
MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \
ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@@ -47,7 +47,7 @@ CONFIGURE_ENV= FCFLAGS="${FFLAGS}" \
INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" \
R_LD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}" TAR="${TAR}"
OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \
- ICU "Improve collation in multibyte locales with ICU" on \
+ ICU "Use ICU for collation in multibyte locales" on \
NLS "Build with NLS support" on \
PCRE_PORT "Use PCRE port instead of bundled source" on \
THREADS "Build a multithreaded R" on
@@ -55,13 +55,13 @@ OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \
OPTIONS+= GHOSTSCRIPT "Enable the [dev2]bitmap() graphics devices" on \
JPEG "Enable the jpeg() graphics device" on \
LETTER_PAPER "Use US Letter paper" off \
- LIBR "Install libR, and a dynamically-linked, rather than a static R" on \
- PANGOCAIRO "Enable cairo and pango in the X11() graphics device" on \
+ LIBR "Install libR and a dynamically-linked R" on \
+ PANGOCAIRO "Enable cairo and pango in graphics devices" on \
PNG "Enable the png() graphics device" on \
TCLTK "Use Tcl/Tk (for the tcltk package)" on \
X11 "Enable the X11() graphics device" on \
- DVI_MANUALS "Install DVI manuals (requires TeX)" off \
- INFO_MANUALS "Install GNU info manuals" on
+ INFO_MANUALS "Install GNU info manuals" on \
+ PDF_MANUALS "Install PDF manuals (requires TeX)" off
.endif # !LIBR_SLAVEPORT
PLIST_SUB= R_SOVERSION="${R_SOVERSION}" \
RBLAS_SOVERSION="${RBLAS_SOVERSION}" \
@@ -207,19 +207,25 @@ ALL_TARGET+= info
INFO= R-FAQ R-admin R-data R-exts R-intro R-lang
.endif
-.if defined(WITH_DVI_MANUALS) && !defined(NOPORTDOCS)
-BUILD_DEPENDS += texi2dvi:${PORTSDIR}/print/texinfo \
- tex:${PORTSDIR}/print/teTeX-base
-ALL_TARGET+= dvi
-INSTALL_TARGET+= install-dvi
-PLIST_SUB+= DVI_MANUAL=""
+.if defined(WITH_PDF_MANUALS) && !defined(NOPORTDOCS)
+BUILD_DEPENDS += pdftex:${PORTSDIR}/print/teTeX-base \
+ texi2dvi:${PORTSDIR}/print/texinfo
+ALL_TARGET+= pdf
+INSTALL_TARGET+= install-pdf
+PLIST_SUB+= PDF_MANUAL=""
.else
-PLIST_SUB+= DVI_MANUAL="@comment "
+PLIST_SUB+= PDF_MANUAL="@comment "
.endif
.endif # LIBR_SLAVEPORT
.endif # !LIBRMATH_SLAVEPORT
post-patch:
+ @${REINPLACE_CMD} -e '\|R_RD4PDF|s|,inconsolata||' \
+ ${WRKSRC}/configure \
+ ${WRKSRC}/src/library/tools/R/Rd2dvi.R \
+ ${WRKSRC}/src/library/utils/R/help.R
+ @${REINPLACE_CMD} -e '\|LIBS=|s|-lrt ||' \
+ ${WRKSRC}/configure
@${REINPLACE_CMD} -e 's|(libdir)/pkgconfig|(prefix)/libdata/pkgconfig|g' \
${WRKSRC}/src/nmath/standalone/Makefile.in \
${WRKSRC}/src/unix/Makefile.in
diff --git a/math/R/distinfo b/math/R/distinfo
index c8760986fb53..ca9844509812 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,2 +1,2 @@
-SHA256 (R-2.13.2.tar.gz) = a1c8733030636c86efa23f6f22dd673a0a54d0fedcffcc8c8deb03da8f972330
-SIZE (R-2.13.2.tar.gz) = 22161810
+SHA256 (R-2.14.0.tar.gz) = 036204f56f8128e633a5d2fe56ebe0ba5a5e8501abe2056736d12a99bf69b910
+SIZE (R-2.14.0.tar.gz) = 22675106
diff --git a/math/R/files/patch-doc__manual__refman.top b/math/R/files/patch-doc__manual__refman.top
new file mode 100644
index 000000000000..9d239cbd25f1
--- /dev/null
+++ b/math/R/files/patch-doc__manual__refman.top
@@ -0,0 +1,33 @@
+--- doc/manual/refman.top.orig 2011-11-23 12:21:46.000000000 -0500
++++ doc/manual/refman.top 2011-11-23 12:22:31.000000000 -0500
+@@ -4,18 +4,18 @@
+
+ %% Set PDF 1.5 and compression, including object compression
+ %% Needed for MiKTeX -- most other distributions default to this
+-\ifx\pdfoutput\undefined
+-\else
+- \ifx\pdfoutput\relax
+- \else
+- \ifnum\pdfoutput>0
+- % PDF output
+- \pdfminorversion=5
+- \pdfcompresslevel=9
+- \pdfobjcompresslevel=2
+- \fi
+- \fi
+-\fi
++%%\ifx\pdfoutput\undefined
++%%\else
++%% \ifx\pdfoutput\relax
++%% \else
++%% \ifnum\pdfoutput>0
++%% % PDF output
++%% \pdfminorversion=5
++%% \pdfcompresslevel=9
++%% \pdfobjcompresslevel=2
++%% \fi
++%% \fi
++%%\fi
+
+ \makeatletter
+ \renewcommand\@pnumwidth{2.05em} % over 1000 pages
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index 6c01398017d4..2f789a1db59c 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -177,6 +177,8 @@ lib/R/library/Matrix/Copyrights
lib/R/library/Matrix/DESCRIPTION
lib/R/library/Matrix/Doxyfile
lib/R/library/Matrix/INDEX
+lib/R/library/Matrix/test-tools-1.R
+lib/R/library/Matrix/test-tools-Matrix.R
lib/R/library/Matrix/Meta/Rd.rds
lib/R/library/Matrix/Meta/data.rds
lib/R/library/Matrix/Meta/hsearch.rds
@@ -354,6 +356,8 @@ lib/R/library/cluster/help/paths.rds
lib/R/library/cluster/html/00Index.html
lib/R/library/cluster/html/R.css
lib/R/library/cluster/libs/cluster.so
+%%NLS%%lib/R/library/cluster/po/de/LC_MESSAGES/R-cluster.mo
+%%NLS%%lib/R/library/cluster/po/en@quot/LC_MESSAGES/R-cluster.mo
lib/R/library/codetools/DESCRIPTION
lib/R/library/codetools/INDEX
lib/R/library/codetools/Meta/Rd.rds
@@ -396,15 +400,15 @@ lib/R/library/compiler/html/R.css
%%NLS%%lib/R/library/compiler/po/ja/LC_MESSAGES/R-compiler.mo
%%NLS%%lib/R/library/compiler/po/pt_BR/LC_MESSAGES/R-compiler.mo
%%NLS%%lib/R/library/compiler/po/ru/LC_MESSAGES/R-compiler.mo
-%%NLS%%lib/R/library/compiler/po/zh_CN/LC_MESSAGES/R-compiler.mo
lib/R/library/datasets/DESCRIPTION
lib/R/library/datasets/INDEX
+lib/R/library/datasets/NAMESPACE
lib/R/library/datasets/Meta/Rd.rds
lib/R/library/datasets/Meta/data.rds
lib/R/library/datasets/Meta/hsearch.rds
lib/R/library/datasets/Meta/links.rds
+lib/R/library/datasets/Meta/nsInfo.rds
lib/R/library/datasets/Meta/package.rds
-lib/R/library/datasets/R/datasets
lib/R/library/datasets/data/Rdata.rdb
lib/R/library/datasets/data/Rdata.rds
lib/R/library/datasets/data/Rdata.rdx
@@ -456,95 +460,95 @@ lib/R/library/grDevices/NAMESPACE
lib/R/library/grDevices/R/grDevices
lib/R/library/grDevices/R/grDevices.rdb
lib/R/library/grDevices/R/grDevices.rdx
-lib/R/library/grDevices/afm/CM_boldx_10.afm
-lib/R/library/grDevices/afm/CM_boldx_italic_10.afm
-lib/R/library/grDevices/afm/CM_italic_10.afm
-lib/R/library/grDevices/afm/CM_regular_10.afm
-lib/R/library/grDevices/afm/CM_symbol_10.afm
-lib/R/library/grDevices/afm/Courier-BoldOblique.afm
-lib/R/library/grDevices/afm/Courier-Bold.afm
-lib/R/library/grDevices/afm/Courier-Oblique.afm
-lib/R/library/grDevices/afm/Courier.afm
-lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm
-lib/R/library/grDevices/afm/Helvetica-Bold.afm
-lib/R/library/grDevices/afm/Helvetica-Oblique.afm
-lib/R/library/grDevices/afm/Helvetica.afm
+lib/R/library/grDevices/afm/CM_boldx_10.afm.gz
+lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz
+lib/R/library/grDevices/afm/CM_italic_10.afm.gz
+lib/R/library/grDevices/afm/CM_regular_10.afm.gz
+lib/R/library/grDevices/afm/CM_symbol_10.afm.gz
+lib/R/library/grDevices/afm/Courier-BoldOblique.afm.gz
+lib/R/library/grDevices/afm/Courier-Bold.afm.gz
+lib/R/library/grDevices/afm/Courier-Oblique.afm.gz
+lib/R/library/grDevices/afm/Courier.afm.gz
+lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm.gz
+lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz
+lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz
+lib/R/library/grDevices/afm/Helvetica.afm.gz
lib/R/library/grDevices/afm/MustRead.html
lib/R/library/grDevices/afm/README
-lib/R/library/grDevices/afm/Symbol.afm
-lib/R/library/grDevices/afm/Times-BoldItalic.afm
-lib/R/library/grDevices/afm/Times-Bold.afm
-lib/R/library/grDevices/afm/Times-Italic.afm
-lib/R/library/grDevices/afm/Times-Roman.afm
-lib/R/library/grDevices/afm/ZapfDingbats.afm
-lib/R/library/grDevices/afm/a010013l.afm
-lib/R/library/grDevices/afm/a010015l.afm
-lib/R/library/grDevices/afm/a010033l.afm
-lib/R/library/grDevices/afm/a010035l.afm
-lib/R/library/grDevices/afm/agd_____.afm
-lib/R/library/grDevices/afm/agdo____.afm
-lib/R/library/grDevices/afm/agw_____.afm
-lib/R/library/grDevices/afm/agwo____.afm
-lib/R/library/grDevices/afm/b018012l.afm
-lib/R/library/grDevices/afm/b018015l.afm
-lib/R/library/grDevices/afm/b018032l.afm
-lib/R/library/grDevices/afm/b018035l.afm
-lib/R/library/grDevices/afm/bkd_____.afm
-lib/R/library/grDevices/afm/bkdi____.afm
-lib/R/library/grDevices/afm/bkl_____.afm
-lib/R/library/grDevices/afm/bkli____.afm
-lib/R/library/grDevices/afm/c059013l.afm
-lib/R/library/grDevices/afm/c059016l.afm
-lib/R/library/grDevices/afm/c059033l.afm
-lib/R/library/grDevices/afm/c059036l.afm
-lib/R/library/grDevices/afm/cmbxti10.afm
-lib/R/library/grDevices/afm/cmti10.afm
-lib/R/library/grDevices/afm/cob_____.afm
-lib/R/library/grDevices/afm/cobo____.afm
-lib/R/library/grDevices/afm/com_____.afm
-lib/R/library/grDevices/afm/coo_____.afm
-lib/R/library/grDevices/afm/hv______.afm
-lib/R/library/grDevices/afm/hvb_____.afm
-lib/R/library/grDevices/afm/hvbo____.afm
-lib/R/library/grDevices/afm/hvn_____.afm
-lib/R/library/grDevices/afm/hvnb____.afm
-lib/R/library/grDevices/afm/hvnbo___.afm
-lib/R/library/grDevices/afm/hvno____.afm
-lib/R/library/grDevices/afm/hvo_____.afm
-lib/R/library/grDevices/afm/n019003l.afm
-lib/R/library/grDevices/afm/n019004l.afm
-lib/R/library/grDevices/afm/n019023l.afm
-lib/R/library/grDevices/afm/n019024l.afm
-lib/R/library/grDevices/afm/n019043l.afm
-lib/R/library/grDevices/afm/n019044l.afm
-lib/R/library/grDevices/afm/n019063l.afm
-lib/R/library/grDevices/afm/n019064l.afm
-lib/R/library/grDevices/afm/n021003l.afm
-lib/R/library/grDevices/afm/n021004l.afm
-lib/R/library/grDevices/afm/n021023l.afm
-lib/R/library/grDevices/afm/n021024l.afm
-lib/R/library/grDevices/afm/n022003l.afm
-lib/R/library/grDevices/afm/n022004l.afm
-lib/R/library/grDevices/afm/n022023l.afm
-lib/R/library/grDevices/afm/n022024l.afm
-lib/R/library/grDevices/afm/ncb_____.afm
-lib/R/library/grDevices/afm/ncbi____.afm
-lib/R/library/grDevices/afm/nci_____.afm
-lib/R/library/grDevices/afm/ncr_____.afm
-lib/R/library/grDevices/afm/p052003l.afm
-lib/R/library/grDevices/afm/p052004l.afm
-lib/R/library/grDevices/afm/p052023l.afm
-lib/R/library/grDevices/afm/p052024l.afm
-lib/R/library/grDevices/afm/pob_____.afm
-lib/R/library/grDevices/afm/pobi____.afm
-lib/R/library/grDevices/afm/poi_____.afm
-lib/R/library/grDevices/afm/por_____.afm
-lib/R/library/grDevices/afm/s050000l.afm
-lib/R/library/grDevices/afm/sy______.afm
-lib/R/library/grDevices/afm/tib_____.afm
-lib/R/library/grDevices/afm/tibi____.afm
-lib/R/library/grDevices/afm/tii_____.afm
-lib/R/library/grDevices/afm/tir_____.afm
+lib/R/library/grDevices/afm/Symbol.afm.gz
+lib/R/library/grDevices/afm/Times-BoldItalic.afm.gz
+lib/R/library/grDevices/afm/Times-Bold.afm.gz
+lib/R/library/grDevices/afm/Times-Italic.afm.gz
+lib/R/library/grDevices/afm/Times-Roman.afm.gz
+lib/R/library/grDevices/afm/ZapfDingbats.afm.gz
+lib/R/library/grDevices/afm/a010013l.afm.gz
+lib/R/library/grDevices/afm/a010015l.afm.gz
+lib/R/library/grDevices/afm/a010033l.afm.gz
+lib/R/library/grDevices/afm/a010035l.afm.gz
+lib/R/library/grDevices/afm/agd_____.afm.gz
+lib/R/library/grDevices/afm/agdo____.afm.gz
+lib/R/library/grDevices/afm/agw_____.afm.gz
+lib/R/library/grDevices/afm/agwo____.afm.gz
+lib/R/library/grDevices/afm/b018012l.afm.gz
+lib/R/library/grDevices/afm/b018015l.afm.gz
+lib/R/library/grDevices/afm/b018032l.afm.gz
+lib/R/library/grDevices/afm/b018035l.afm.gz
+lib/R/library/grDevices/afm/bkd_____.afm.gz
+lib/R/library/grDevices/afm/bkdi____.afm.gz
+lib/R/library/grDevices/afm/bkl_____.afm.gz
+lib/R/library/grDevices/afm/bkli____.afm.gz
+lib/R/library/grDevices/afm/c059013l.afm.gz
+lib/R/library/grDevices/afm/c059016l.afm.gz
+lib/R/library/grDevices/afm/c059033l.afm.gz
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+lib/R/library/grDevices/afm/cmbxti10.afm.gz
+lib/R/library/grDevices/afm/cmti10.afm.gz
+lib/R/library/grDevices/afm/cob_____.afm.gz
+lib/R/library/grDevices/afm/cobo____.afm.gz
+lib/R/library/grDevices/afm/com_____.afm.gz
+lib/R/library/grDevices/afm/coo_____.afm.gz
+lib/R/library/grDevices/afm/hv______.afm.gz
+lib/R/library/grDevices/afm/hvb_____.afm.gz
+lib/R/library/grDevices/afm/hvbo____.afm.gz
+lib/R/library/grDevices/afm/hvn_____.afm.gz
+lib/R/library/grDevices/afm/hvnb____.afm.gz
+lib/R/library/grDevices/afm/hvnbo___.afm.gz
+lib/R/library/grDevices/afm/hvno____.afm.gz
+lib/R/library/grDevices/afm/hvo_____.afm.gz
+lib/R/library/grDevices/afm/n019003l.afm.gz
+lib/R/library/grDevices/afm/n019004l.afm.gz
+lib/R/library/grDevices/afm/n019023l.afm.gz
+lib/R/library/grDevices/afm/n019024l.afm.gz
+lib/R/library/grDevices/afm/n019043l.afm.gz
+lib/R/library/grDevices/afm/n019044l.afm.gz
+lib/R/library/grDevices/afm/n019063l.afm.gz
+lib/R/library/grDevices/afm/n019064l.afm.gz
+lib/R/library/grDevices/afm/n021003l.afm.gz
+lib/R/library/grDevices/afm/n021004l.afm.gz
+lib/R/library/grDevices/afm/n021023l.afm.gz
+lib/R/library/grDevices/afm/n021024l.afm.gz
+lib/R/library/grDevices/afm/n022003l.afm.gz
+lib/R/library/grDevices/afm/n022004l.afm.gz
+lib/R/library/grDevices/afm/n022023l.afm.gz
+lib/R/library/grDevices/afm/n022024l.afm.gz
+lib/R/library/grDevices/afm/ncb_____.afm.gz
+lib/R/library/grDevices/afm/ncbi____.afm.gz
+lib/R/library/grDevices/afm/nci_____.afm.gz
+lib/R/library/grDevices/afm/ncr_____.afm.gz
+lib/R/library/grDevices/afm/p052003l.afm.gz
+lib/R/library/grDevices/afm/p052004l.afm.gz
+lib/R/library/grDevices/afm/p052023l.afm.gz
+lib/R/library/grDevices/afm/p052024l.afm.gz
+lib/R/library/grDevices/afm/pob_____.afm.gz
+lib/R/library/grDevices/afm/pobi____.afm.gz
+lib/R/library/grDevices/afm/poi_____.afm.gz
+lib/R/library/grDevices/afm/por_____.afm.gz
+lib/R/library/grDevices/afm/s050000l.afm.gz
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+lib/R/library/grDevices/afm/tib_____.afm.gz
+lib/R/library/grDevices/afm/tibi____.afm.gz
+lib/R/library/grDevices/afm/tii_____.afm.gz
+lib/R/library/grDevices/afm/tir_____.afm.gz
lib/R/library/grDevices/enc/AdobeStd.enc
lib/R/library/grDevices/enc/AdobeSym.enc
lib/R/library/grDevices/enc/CP1250.enc
@@ -571,6 +575,8 @@ lib/R/library/grDevices/help/paths.rds
lib/R/library/grDevices/html/00Index.html
lib/R/library/grDevices/html/R.css
lib/R/library/grDevices/icc/srgb
+lib/R/library/grDevices/icc/srgb.flate
+lib/R/library/grDevices/libs/cairo.so
lib/R/library/grDevices/libs/grDevices.so
%%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo
%%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/grDevices.mo
@@ -615,6 +621,13 @@ lib/R/library/graphics/help/aliases.rds
lib/R/library/graphics/help/graphics.rdb
lib/R/library/graphics/help/graphics.rdx
lib/R/library/graphics/help/paths.rds
+lib/R/library/graphics/help/figures/mai.pdf
+lib/R/library/graphics/help/figures/mai.png
+lib/R/library/graphics/help/figures/oma.pdf
+lib/R/library/graphics/help/figures/oma.png
+lib/R/library/graphics/help/figures/pch.pdf
+lib/R/library/graphics/help/figures/pch.png
+lib/R/library/graphics/help/figures/pch.svg
lib/R/library/graphics/html/00Index.html
lib/R/library/graphics/html/R.css
%%NLS%%lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo
@@ -640,45 +653,44 @@ lib/R/library/grid/R/grid.rdb
lib/R/library/grid/R/grid.rdx
lib/R/library/grid/doc/changes.txt
lib/R/library/grid/doc/displaylist.R
-lib/R/library/grid/doc/displaylist.Snw
+lib/R/library/grid/doc/displaylist.Rnw
lib/R/library/grid/doc/displaylist.pdf
lib/R/library/grid/doc/frame.R
-lib/R/library/grid/doc/frame.Snw
+lib/R/library/grid/doc/frame.Rnw
lib/R/library/grid/doc/frame.pdf
lib/R/library/grid/doc/grid.R
-lib/R/library/grid/doc/grid.Snw
-lib/R/library/grid/doc/grid.bib
+lib/R/library/grid/doc/grid.Rnw
lib/R/library/grid/doc/grid.pdf
lib/R/library/grid/doc/grobs.R
-lib/R/library/grid/doc/grobs.Snw
+lib/R/library/grid/doc/grobs.Rnw
lib/R/library/grid/doc/grobs.pdf
lib/R/library/grid/doc/index.html
lib/R/library/grid/doc/interactive.R
-lib/R/library/grid/doc/interactive.Snw
+lib/R/library/grid/doc/interactive.Rnw
lib/R/library/grid/doc/interactive.pdf
lib/R/library/grid/doc/locndimn.R
-lib/R/library/grid/doc/locndimn.Snw
+lib/R/library/grid/doc/locndimn.Rnw
lib/R/library/grid/doc/locndimn.pdf
lib/R/library/grid/doc/moveline.R
-lib/R/library/grid/doc/moveline.Snw
+lib/R/library/grid/doc/moveline.Rnw
lib/R/library/grid/doc/moveline.pdf
lib/R/library/grid/doc/nonfinite.R
-lib/R/library/grid/doc/nonfinite.Snw
+lib/R/library/grid/doc/nonfinite.Rnw
lib/R/library/grid/doc/nonfinite.pdf
lib/R/library/grid/doc/plotexample.R
-lib/R/library/grid/doc/plotexample.Snw
+lib/R/library/grid/doc/plotexample.Rnw
lib/R/library/grid/doc/plotexample.pdf
lib/R/library/grid/doc/rotated.R
-lib/R/library/grid/doc/rotated.Snw
+lib/R/library/grid/doc/rotated.Rnw
lib/R/library/grid/doc/rotated.pdf
lib/R/library/grid/doc/saveload.R
-lib/R/library/grid/doc/saveload.Snw
+lib/R/library/grid/doc/saveload.Rnw
lib/R/library/grid/doc/saveload.pdf
lib/R/library/grid/doc/sharing.R
-lib/R/library/grid/doc/sharing.Snw
+lib/R/library/grid/doc/sharing.Rnw
lib/R/library/grid/doc/sharing.pdf
lib/R/library/grid/doc/viewports.R
-lib/R/library/grid/doc/viewports.Snw
+lib/R/library/grid/doc/viewports.Rnw
lib/R/library/grid/doc/viewports.pdf
lib/R/library/grid/help/AnIndex
lib/R/library/grid/help/aliases.rds
@@ -863,6 +875,38 @@ lib/R/library/nnet/libs/nnet.so
%%NLS%%lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo
%%NLS%%lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo
%%NLS%%lib/R/library/nnet/po/fr/LC_MESSAGES/R-nnet.mo
+lib/R/library/parallel/DESCRIPTION
+lib/R/library/parallel/INDEX
+lib/R/library/parallel/Meta/Rd.rds
+lib/R/library/parallel/Meta/hsearch.rds
+lib/R/library/parallel/Meta/links.rds
+lib/R/library/parallel/Meta/nsInfo.rds
+lib/R/library/parallel/Meta/package.rds
+lib/R/library/parallel/Meta/vignette.rds
+lib/R/library/parallel/NAMESPACE
+lib/R/library/parallel/R/parallel
+lib/R/library/parallel/R/parallel.rdb
+lib/R/library/parallel/R/parallel.rdx
+lib/R/library/parallel/doc/index.html
+lib/R/library/parallel/doc/parallel.R
+lib/R/library/parallel/doc/parallel.Rnw
+lib/R/library/parallel/doc/parallel.pdf
+lib/R/library/parallel/help/AnIndex
+lib/R/library/parallel/help/aliases.rds
+lib/R/library/parallel/help/parallel.rdb
+lib/R/library/parallel/help/parallel.rdx
+lib/R/library/parallel/help/paths.rds
+lib/R/library/parallel/html/00Index.html
+lib/R/library/parallel/html/R.css
+lib/R/library/parallel/libs/parallel.so
+%%NLS%%lib/R/library/parallel/po/de/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/parallel/po/de/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/parallel/po/en@quot/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/parallel/po/en@quot/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/parallel/po/fr/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/parallel/po/fr/LC_MESSAGES/parallel.mo
+%%NLS%%lib/R/library/parallel/po/ru/LC_MESSAGES/R-parallel.mo
+%%NLS%%lib/R/library/parallel/po/ru/LC_MESSAGES/parallel.mo
lib/R/library/rpart/DESCRIPTION
lib/R/library/rpart/INDEX
lib/R/library/rpart/Meta/Rd.rds
@@ -1052,7 +1096,6 @@ lib/R/library/stats/libs/stats.so
%%NLS%%lib/R/library/stats/po/tr/LC_MESSAGES/R-stats.mo
%%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/R-stats.mo
%%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/stats.mo
-lib/R/library/survival/COPYING
lib/R/library/survival/DESCRIPTION
lib/R/library/survival/INDEX
lib/R/library/survival/Meta/Rd.rds
@@ -1221,10 +1264,10 @@ lib/R/share/R/REMOVE.R
lib/R/share/R/examples-footer.R
lib/R/share/R/examples-header.R
lib/R/share/R/nspackloader.R
-lib/R/share/R/packloader.R
lib/R/share/R/tests-startup.R
lib/R/share/encodings/Adobe-glyphlist
lib/R/share/encodings/character-sets
+lib/R/share/java/README
lib/R/share/java/getsp.class
lib/R/share/licenses/AGPL-3
lib/R/share/licenses/Artistic-1.0
@@ -1254,6 +1297,7 @@ lib/R/share/make/basepkg.mk
lib/R/share/make/check.mk
lib/R/share/make/clean.mk
lib/R/share/make/config.mk
+lib/R/share/make/lazycomp.mk
lib/R/share/make/shlib.mk
lib/R/share/make/vars.mk
lib/R/share/make/winshlib.mk
@@ -1271,27 +1315,21 @@ lib/R/share/texmf/tex/latex/ts1aer.fd
lib/R/share/texmf/tex/latex/ts1aett.fd
lib/R/share/texmf/tex/latex/upquote.sty
%%LIBR%%libdata/pkgconfig/libR.pc
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi
+%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.pdf
%%DOCSDIR%%/manual/R-FAQ.html
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi
+%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-admin.pdf
%%DOCSDIR%%/manual/R-admin.html
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-data.dvi
+%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-data.pdf
%%DOCSDIR%%/manual/R-data.html
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-exts.dvi
+%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-exts.pdf
%%DOCSDIR%%/manual/R-exts.html
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-intro.dvi
+%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-intro.pdf
%%DOCSDIR%%/manual/R-intro.html
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-ints.dvi
+%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-ints.pdf
%%DOCSDIR%%/manual/R-ints.html
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-lang.dvi
+%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/R-lang.pdf
%%DOCSDIR%%/manual/R-lang.html
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/QQ.eps
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ecdf.eps
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig11.eps
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/fig12.eps
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/hist.eps
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/images/ice.eps
-%%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/refman.dvi
+%%PORTDOCS%%%%PDF_MANUAL%%%%DOCSDIR%%/manual/refman.pdf
@dirrm lib/R/share/texmf/tex/latex
@dirrm lib/R/share/texmf/tex
@dirrm lib/R/share/texmf/bibtex/bst
@@ -1533,6 +1571,22 @@ lib/R/share/texmf/tex/latex/upquote.sty
@dirrm lib/R/library/rpart/R
@dirrm lib/R/library/rpart/Meta
@dirrm lib/R/library/rpart
+%%NLS%%@dirrm lib/R/library/parallel/po/ru/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/parallel/po/ru
+%%NLS%%@dirrm lib/R/library/parallel/po/fr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/parallel/po/fr
+%%NLS%%@dirrm lib/R/library/parallel/po/en@quot/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/parallel/po/en@quot
+%%NLS%%@dirrm lib/R/library/parallel/po/de/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/parallel/po/de
+%%NLS%%@dirrm lib/R/library/parallel/po
+@dirrm lib/R/library/parallel/libs
+@dirrm lib/R/library/parallel/html
+@dirrm lib/R/library/parallel/help
+@dirrm lib/R/library/parallel/doc
+@dirrm lib/R/library/parallel/R
+@dirrm lib/R/library/parallel/Meta
+@dirrm lib/R/library/parallel
%%NLS%%@dirrm lib/R/library/nnet/po/fr/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/nnet/po/fr
%%NLS%%@dirrm lib/R/library/nnet/po/en@quot/LC_MESSAGES
@@ -1653,6 +1707,7 @@ lib/R/share/texmf/tex/latex/upquote.sty
%%NLS%%@dirrm lib/R/library/graphics/po/de
%%NLS%%@dirrm lib/R/library/graphics/po
@dirrm lib/R/library/graphics/html
+@dirrm lib/R/library/graphics/help/figures
@dirrm lib/R/library/graphics/help
@dirrm lib/R/library/graphics/demo
@dirrm lib/R/library/graphics/R
@@ -1705,11 +1760,8 @@ lib/R/share/texmf/tex/latex/upquote.sty
@dirrm lib/R/library/datasets/html
@dirrm lib/R/library/datasets/help
@dirrm lib/R/library/datasets/data
-@dirrm lib/R/library/datasets/R
@dirrm lib/R/library/datasets/Meta
@dirrm lib/R/library/datasets
-%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN/LC_MESSAGES
-%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN
%%NLS%%@dirrm lib/R/library/compiler/po/ru/LC_MESSAGES
%%NLS%%@dirrm lib/R/library/compiler/po/ru
%%NLS%%@dirrm lib/R/library/compiler/po/pt_BR/LC_MESSAGES
@@ -1733,6 +1785,11 @@ lib/R/share/texmf/tex/latex/upquote.sty
@dirrm lib/R/library/codetools/R
@dirrm lib/R/library/codetools/Meta
@dirrm lib/R/library/codetools
+%%NLS%%@dirrm lib/R/library/cluster/po/de/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/cluster/po/de
+%%NLS%%@dirrm lib/R/library/cluster/po/en@quot/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/cluster/po/en@quot
+%%NLS%%@dirrm lib/R/library/cluster/po
@dirrm lib/R/library/cluster/libs
@dirrm lib/R/library/cluster/html
@dirrm lib/R/library/cluster/help
@@ -1845,7 +1902,6 @@ lib/R/share/texmf/tex/latex/upquote.sty
@dirrm lib/R/bin/exec
@dirrm lib/R/bin
@dirrmtry lib/R
-%%PORTDOCS%%%%DVI_MANUAL%%@dirrm %%DOCSDIR%%/manual/images
@dirrm %%DOCSDIR%%/manual
@dirrm %%DOCSDIR%%/html
@dirrm %%DOCSDIR%%
diff --git a/math/ess/Makefile b/math/ess/Makefile
index b84be9795df3..ef735d17ffd0 100644
--- a/math/ess/Makefile
+++ b/math/ess/Makefile
@@ -7,7 +7,7 @@
PORTNAME= ess
PORTVERSION= 5.14
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= math
MASTER_SITES= http://ess.r-project.org/downloads/ess/
EXTRACT_SUFX= .tgz
diff --git a/math/p5-Statistics-R/Makefile b/math/p5-Statistics-R/Makefile
index 38a257b64694..43309cfc6464 100644
--- a/math/p5-Statistics-R/Makefile
+++ b/math/p5-Statistics-R/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Statistics-R
PORTVERSION= 0.23
+PORTREVISION= 1
CATEGORIES= math perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:FANGLY
diff --git a/math/rkward-kde4/Makefile b/math/rkward-kde4/Makefile
index e99f41b9e063..cbfeb16a1605 100644
--- a/math/rkward-kde4/Makefile
+++ b/math/rkward-kde4/Makefile
@@ -7,6 +7,7 @@
PORTNAME= rkward
PORTVERSION= 0.5.7
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Current_Stable_Releases
PKGNAMESUFFIX= -kde4
diff --git a/math/rkward-kde4/pkg-plist b/math/rkward-kde4/pkg-plist
index 3e26adb4fc26..fedd98c5c614 100644
--- a/math/rkward-kde4/pkg-plist
+++ b/math/rkward-kde4/pkg-plist
@@ -596,6 +596,7 @@ lib/R/library/rkward/Meta/Rd.rds
lib/R/library/rkward/Meta/hsearch.rds
lib/R/library/rkward/Meta/links.rds
lib/R/library/rkward/Meta/package.rds
+lib/R/library/rkward/NAMESPACE
lib/R/library/rkward/R/rkward
lib/R/library/rkward/R/rkward.rdb
lib/R/library/rkward/R/rkward.rdx
diff --git a/math/rkward/Makefile b/math/rkward/Makefile
index 3a83073248cf..1dbfab10c0dc 100644
--- a/math/rkward/Makefile
+++ b/math/rkward/Makefile
@@ -7,7 +7,7 @@
PORTNAME= rkward
DISTVERSION= 0.4.9a
-PORTREVISION= 12
+PORTREVISION= 13
PORTEPOCH= 3
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Historical_Releases/0.4.x_and_earlier/0.4.9a%20%28KDE3%29
diff --git a/math/rkward/pkg-plist b/math/rkward/pkg-plist
index ac08da5655d9..9104b17e4046 100644
--- a/math/rkward/pkg-plist
+++ b/math/rkward/pkg-plist
@@ -474,6 +474,7 @@ share/icons/locolor/32x32/apps/rkward.png
@cwd %%LOCALBASE%%
lib/R/library/rkward/DESCRIPTION
lib/R/library/rkward/INDEX
+lib/R/library/rkward/NAMESPACE
lib/R/library/rkward/Meta/Rd.rds
lib/R/library/rkward/Meta/hsearch.rds
lib/R/library/rkward/Meta/links.rds
@@ -492,7 +493,6 @@ lib/R/library/rkward/libs/rkward.so
@dirrm lib/R/library/rkward/libs
@dirrm lib/R/library/rkward/html
@dirrm lib/R/library/rkward/help
-@dirrm lib/R/library/rkward/R-ex
@dirrm lib/R/library/rkward/R
@dirrm lib/R/library/rkward/Meta
@dirrm lib/R/library/rkward
diff --git a/math/rpy/Makefile b/math/rpy/Makefile
index 1de876b18568..320db139f7e5 100644
--- a/math/rpy/Makefile
+++ b/math/rpy/Makefile
@@ -8,7 +8,7 @@
PORTNAME= rpy
PORTVERSION= 1.0.3
-PORTREVISION= 19
+PORTREVISION= 20
CATEGORIES= math
MASTER_SITES= SF
diff --git a/math/rpy/pkg-plist b/math/rpy/pkg-plist
index 32e675dfbb7a..f5f0fbe1a979 100644
--- a/math/rpy/pkg-plist
+++ b/math/rpy/pkg-plist
@@ -1,4 +1,4 @@
-%%PYTHON_SITELIBDIR%%/_rpy2132.so
+%%PYTHON_SITELIBDIR%%/_rpy2140.so
%%PYTHON_SITELIBDIR%%/rpy.py
%%PYTHON_SITELIBDIR%%/rpy.pyc
%%PYTHON_SITELIBDIR%%/rpy.pyo
diff --git a/math/rpy2/Makefile b/math/rpy2/Makefile
index 2dc00259bc86..c0ebd70f23d7 100644
--- a/math/rpy2/Makefile
+++ b/math/rpy2/Makefile
@@ -8,6 +8,7 @@
PORTNAME= rpy2
PORTVERSION= 2.2.4
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= CHEESESHOP \
SF
diff --git a/net/R-cran-twitteR/Makefile b/net/R-cran-twitteR/Makefile
index 83ba4f8ed5bd..90e918f37bab 100644
--- a/net/R-cran-twitteR/Makefile
+++ b/net/R-cran-twitteR/Makefile
@@ -7,6 +7,7 @@
PORTNAME= twitteR
PORTVERSION= 0.99.14
+PORTREVISION= 1
CATEGORIES= net
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/science/R-cran-AMORE/Makefile b/science/R-cran-AMORE/Makefile
index 6afebd68d5f3..18c4b17053dd 100644
--- a/science/R-cran-AMORE/Makefile
+++ b/science/R-cran-AMORE/Makefile
@@ -7,7 +7,7 @@
PORTNAME= AMORE
PORTVERSION= 0.2.12
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/science/R-cran-DCluster/Makefile b/science/R-cran-DCluster/Makefile
index 931120aae16b..862beb53fd93 100644
--- a/science/R-cran-DCluster/Makefile
+++ b/science/R-cran-DCluster/Makefile
@@ -7,7 +7,7 @@
PORTNAME= DCluster
DISTVERSION= 0.2-3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/science/R-cran-Epi/Makefile b/science/R-cran-Epi/Makefile
index 2e2e52656da6..231e7823a1d0 100644
--- a/science/R-cran-Epi/Makefile
+++ b/science/R-cran-Epi/Makefile
@@ -7,7 +7,7 @@
PORTNAME= Epi
PORTVERSION= 1.1.24
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/science/R-cran-bayesm/Makefile b/science/R-cran-bayesm/Makefile
index 0cd3ddad242f..5c3481fb27d4 100644
--- a/science/R-cran-bayesm/Makefile
+++ b/science/R-cran-bayesm/Makefile
@@ -7,7 +7,7 @@
PORTNAME= bayesm
PORTVERSION= 2.2.4
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/science/R-cran-eco/Makefile b/science/R-cran-eco/Makefile
index 9b85133969b8..15781cdfa084 100644
--- a/science/R-cran-eco/Makefile
+++ b/science/R-cran-eco/Makefile
@@ -7,7 +7,7 @@
PORTNAME= eco
PORTVERSION= 3.1.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/security/R-cran-ROAuth/Makefile b/security/R-cran-ROAuth/Makefile
index 48f17187f379..2ab6535b5094 100644
--- a/security/R-cran-ROAuth/Makefile
+++ b/security/R-cran-ROAuth/Makefile
@@ -7,7 +7,7 @@
PORTNAME= ROAuth
PORTVERSION= 0.9.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= security
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/security/R-cran-digest/Makefile b/security/R-cran-digest/Makefile
index ece7ba214a92..7fc19ca608d1 100644
--- a/security/R-cran-digest/Makefile
+++ b/security/R-cran-digest/Makefile
@@ -7,7 +7,7 @@
PORTNAME= digest
PORTVERSION= 0.5.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= security
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/textproc/R-cran-XML/Makefile b/textproc/R-cran-XML/Makefile
index 7bd69836e433..ed480f25b853 100644
--- a/textproc/R-cran-XML/Makefile
+++ b/textproc/R-cran-XML/Makefile
@@ -7,7 +7,7 @@
PORTNAME= XML
DISTVERSION= 3.4-3
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= textproc
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/textproc/R-cran-xtable/Makefile b/textproc/R-cran-xtable/Makefile
index 3eea87fca4fe..c20cd4cf36d5 100644
--- a/textproc/R-cran-xtable/Makefile
+++ b/textproc/R-cran-xtable/Makefile
@@ -7,6 +7,7 @@
PORTNAME= xtable
DISTVERSION= 1.6-0
+PORTREVISION= 1
CATEGORIES= textproc
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/www/R-cran-Rpad/Makefile b/www/R-cran-Rpad/Makefile
index 08fae09f83d2..f77462862eb3 100644
--- a/www/R-cran-Rpad/Makefile
+++ b/www/R-cran-Rpad/Makefile
@@ -7,7 +7,7 @@
PORTNAME= Rpad
PORTVERSION= 1.3.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= www
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/www/R-cran-scrapeR/Makefile b/www/R-cran-scrapeR/Makefile
index 9a5e586505d1..ab7f2c1d912e 100644
--- a/www/R-cran-scrapeR/Makefile
+++ b/www/R-cran-scrapeR/Makefile
@@ -7,7 +7,7 @@
PORTNAME= scrapeR
PORTVERSION= 0.1.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= www
DISTNAME= ${PORTNAME}_${PORTVERSION}