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-rw-r--r--biology/adun/files/patch-AdLinkedList.h12
-rw-r--r--biology/adun/files/patch-AdunLinkedList.m14
-rw-r--r--biology/adun/files/patch-AdunMemoryManager.h22
-rw-r--r--biology/adun/files/patch-AdunMemoryManager.m266
-rw-r--r--biology/adun/files/patch-GNUmakefile17
-rw-r--r--biology/adun/files/patch-main.m23
6 files changed, 12 insertions, 342 deletions
diff --git a/biology/adun/files/patch-AdLinkedList.h b/biology/adun/files/patch-AdLinkedList.h
new file mode 100644
index 000000000000..62ce6dcba44f
--- /dev/null
+++ b/biology/adun/files/patch-AdLinkedList.h
@@ -0,0 +1,12 @@
+--- Kernel/Base/AdLinkedList.h.orig 2006-11-02 14:42:45.000000000 +0100
++++ Kernel/Base/AdLinkedList.h 2008-04-29 09:14:45.000000000 +0200
+@@ -25,6 +25,9 @@
+
+ #include <stdio.h>
+ #include <stdlib.h>
++#ifdef __FreeBSD__
++#include <sys/types.h>
++#endif
+
+ //! \brief Element for the linked lists.
+ /**
diff --git a/biology/adun/files/patch-AdunLinkedList.m b/biology/adun/files/patch-AdunLinkedList.m
deleted file mode 100644
index 165fbbf6fcb0..000000000000
--- a/biology/adun/files/patch-AdunLinkedList.m
+++ /dev/null
@@ -1,14 +0,0 @@
---- Kernel/AdunKernel/Framework/AdunLinkedList.m.orig Tue Jun 13 12:16:44 2006
-+++ Kernel/AdunKernel/Framework/AdunLinkedList.m Sun Nov 5 13:34:01 2006
-@@ -109,7 +109,11 @@
- NSDebugLLog(@"AdListMemoryManagement", @"Creating New Block - There are now %d blocks", block_no);
- //On 64 bit machines we should align on a 64 bit boundary
-
-+#ifndef __FreeBSD__
- posix_memalign((void**)&listPointer, 32, BLOCKSIZE*sizeof(ListElement));
-+#else
-+ listPointer = malloc(BLOCKSIZE*sizeof(ListElement));
-+#endif
- blocks[block_no-1] = listPointer;
-
- return blocks[block_no-1];
diff --git a/biology/adun/files/patch-AdunMemoryManager.h b/biology/adun/files/patch-AdunMemoryManager.h
deleted file mode 100644
index e88031346f82..000000000000
--- a/biology/adun/files/patch-AdunMemoryManager.h
+++ /dev/null
@@ -1,22 +0,0 @@
---- Kernel/AdunKernel/Headers/AdunKernel/AdunMemoryManager.h.orig Tue Jun 13 12:16:44 2006
-+++ Kernel/AdunKernel/Headers/AdunKernel/AdunMemoryManager.h Sun Nov 5 13:16:58 2006
-@@ -24,7 +24,9 @@
- #define _ADUNIOMANAGER_
-
- #include <stdlib.h>
-+#ifndef __FreeBSD__
- #include <malloc.h>
-+#endif
- #include "Base/InterTable.h"
- #include "AdunKernel/AdunDefinitions.h"
- #include "AdunKernel/AdunObject.h"
-@@ -38,7 +40,9 @@
-
- @interface AdMemoryManager: AdObject
- {
-+#ifndef __FreeBSD__
- struct mallinfo mem_struct;
-+#endif
- BOOL MEMORY_STATS;
- }
-
diff --git a/biology/adun/files/patch-AdunMemoryManager.m b/biology/adun/files/patch-AdunMemoryManager.m
deleted file mode 100644
index c1d7235482b7..000000000000
--- a/biology/adun/files/patch-AdunMemoryManager.m
+++ /dev/null
@@ -1,266 +0,0 @@
---- Kernel/AdunKernel/Framework/AdunMemoryManager.m.orig Tue Jun 13 12:16:44 2006
-+++ Kernel/AdunKernel/Framework/AdunMemoryManager.m Sun Nov 5 13:15:25 2006
-@@ -68,6 +68,7 @@
- NSError* error;
- NSMutableDictionary* errorDict;
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -77,6 +78,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- //The return value of malloc(0) is implementation dependant
- //It can return NULL in which case it is indistinguisable from
-@@ -133,6 +135,7 @@
-
- memset(array, 0, size);
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -143,6 +146,7 @@
- mem_struct.fordblks);
- fflush(stderr);
- }
-+#endif
-
-
- return array;
-@@ -154,6 +158,7 @@
- double *array;
- AdMatrix *matrix;
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -163,6 +168,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- matrix = (AdMatrix*)malloc(sizeof(AdMatrix));
- matrix->no_rows = no_rows;
-@@ -172,6 +178,7 @@
- for(i=0, j=0; i < no_rows; i++, j = j + no_columns)
- matrix->matrix[i] = array + j;
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -181,6 +188,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- return matrix;
- }
-@@ -191,6 +199,7 @@
- int *array;
- IntMatrix *matrix;
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -200,6 +209,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- matrix = (IntMatrix*)malloc(sizeof(IntMatrix));
- matrix->no_rows = no_rows;
-@@ -209,6 +219,7 @@
- for(i=0, j=0; i < no_rows; i++, j = j + no_columns)
- matrix->matrix[i] = array + j;
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -220,6 +231,7 @@
- }
-
- return matrix;
-+#endif
- }
-
- - (InterTable*) allocateInterTableWithRows: (int) no_rows withColumns: (int) no_columns
-@@ -228,6 +240,7 @@
- double *array;
- InterTable *table;
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -237,6 +250,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- table = (InterTable*)malloc(sizeof(InterTable));
- table->no_interactions = no_rows;
-@@ -248,6 +262,7 @@
- for(i=0, j=0; i < no_rows; i++, j = j + no_columns)
- table->table[i] = array + j;
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -257,12 +272,14 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- return table;
- }
-
- - (void) freeArray: (void*)array
- {
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -272,9 +289,11 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- free(array);
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -284,6 +303,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
- }
-
- /** Do not use this method to free matrices not allocated by one of the
-@@ -297,6 +317,7 @@
- free(matrix[0]); //frees the number array
- free(matrix); //frees the index array
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -306,6 +327,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- }
-
-@@ -313,6 +335,7 @@
- {
- //matrices are allocated as arrays
- //with another array of indexes
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -322,6 +345,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- if(matrix->no_rows != 0)
- {
-@@ -330,6 +354,7 @@
- }
- free(matrix);
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -339,10 +364,12 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
- }
-
- - (void) freeIntMatrix: (IntMatrix*) matrix
- {
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -352,6 +379,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- if(matrix->no_rows != 0)
- {
-@@ -360,6 +388,7 @@
- }
- free(matrix);
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -369,6 +398,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
- }
-
- - (void) freeInterTable: (InterTable*) matrix
-@@ -376,6 +406,7 @@
- //matrices are allocated as arrays
- //with another array of indexes
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -385,6 +416,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
-
- if(matrix->no_interactions != 0)
- {
-@@ -394,6 +426,7 @@
-
- free(matrix);
-
-+#ifndef __FreeBSD__
- if(MEMORY_STATS==YES)
- {
- mem_struct = mallinfo();
-@@ -403,6 +436,7 @@
- (float)mem_struct.uordblks/(float)MEM_CON,
- mem_struct.fordblks);
- }
-+#endif
- }
-
- @end
diff --git a/biology/adun/files/patch-GNUmakefile b/biology/adun/files/patch-GNUmakefile
deleted file mode 100644
index e9ab0c8dc869..000000000000
--- a/biology/adun/files/patch-GNUmakefile
+++ /dev/null
@@ -1,17 +0,0 @@
---- GNUmakefile.orig Tue Apr 4 18:23:24 2006
-+++ GNUmakefile Sun Nov 5 13:56:03 2006
-@@ -2,12 +2,12 @@
- include $(GNUSTEP_MAKEFILES)/common.make
-
- SUBPROJECTS = Kernel/ MolTalk/ UL/
--GNUSTEP_INSTALLATION_DIR=$(HOME)/GNUstep
-+#GNUSTEP_INSTALLATION_DIR=$(HOME)/GNUstep
-
- #Rpm
-
- PACKAGE_NAME=Adun
--PACKAGE_VERSION=0.5
-+PACKAGE_VERSION=0.6
-
- -include GNUmakefile.preamble
-
diff --git a/biology/adun/files/patch-main.m b/biology/adun/files/patch-main.m
deleted file mode 100644
index fff8726b3ebb..000000000000
--- a/biology/adun/files/patch-main.m
+++ /dev/null
@@ -1,23 +0,0 @@
---- Kernel/main.m.orig Mon Aug 7 12:17:30 2006
-+++ Kernel/main.m Sun Nov 5 13:27:26 2006
-@@ -3,7 +3,9 @@
- #include <stdio.h>
- #include <float.h>
- #include <fenv.h>
-+#ifndef __FreeBSD__
- #include <mcheck.h>
-+#endif
- #include "AdunKernel/AdunKernel.h"
-
- /** \mainpage
-@@ -250,8 +252,10 @@
-
- if([[NSUserDefaults standardUserDefaults] boolForKey: @"TraceMemory"] == YES)
- {
-+#ifndef __FreeBSD__
- mtrace();
- mcheck(NULL);
-+#endif
- }
-
- logFile = [[NSUserDefaults standardUserDefaults] stringForKey: @"LogFile"];
generated by cgit v1.2.3 (git 2.25.1) at 2024-11-13 19:35:27 +0000