diff options
Diffstat (limited to 'biology/biojava/Makefile')
| -rw-r--r-- | biology/biojava/Makefile | 75 |
1 files changed, 24 insertions, 51 deletions
diff --git a/biology/biojava/Makefile b/biology/biojava/Makefile index 1af1f69a9832..a643d7a9f671 100644 --- a/biology/biojava/Makefile +++ b/biology/biojava/Makefile @@ -6,63 +6,34 @@ # PORTNAME= biojava -DISTVERSION= 1.5-beta2 -PORTREVISION= 2 +DISTVERSION= 1.7 PORTEPOCH= 1 CATEGORIES= biology java -MASTER_SITES= http://www.biojava.org/download/bj15b/all/:source \ - http://www.biojava.org/download/bj15b/bin/:bin -DISTFILES= ${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX}:source \ - bytecode.jar:bin -EXTRACT_ONLY= ${PORTNAME}-${DISTVERSION}${EXTRACT_SUFX} +MASTER_SITES= http://www.biojava.org/download/bj17/all/ +DISTNAME= ${PORTNAME}-${DISTVERSION}-all +EXTRACT_SUFX= .jar -MAINTAINER= ports@FreeBSD.org +MAINTAINER= wenheping@gmail.com COMMENT= Open-source java tools for processing biological data -BUILD_DEPENDS= ${JAVALIBDIR}/hsqldb.jar:${PORTSDIR}/databases/hsqldb \ - ${JAVALIBDIR}/xml-apis.jar:${PORTSDIR}/textproc/xerces-j \ - ${JAVALIBDIR}/jakarta-regexp.jar:${PORTSDIR}/java/jakarta-regexp \ - ${JAVALIBDIR}/commons-cli.jar:${PORTSDIR}/java/jakarta-commons-cli \ - ${JAVALIBDIR}/commons-dbcp.jar:${PORTSDIR}/java/jakarta-commons-dbcp \ - ${JAVALIBDIR}/commons-pool.jar:${PORTSDIR}/java/jakarta-commons-pool \ - ${JAVALIBDIR}/commons-collections.jar:${PORTSDIR}/java/jakarta-commons-collections -RUN_DEPENDS= ${JAVALIBDIR}/hsqldb.jar:${PORTSDIR}/databases/hsqldb \ - ${JAVALIBDIR}/xml-apis.jar:${PORTSDIR}/textproc/xerces-j \ - ${JAVALIBDIR}/jakarta-regexp.jar:${PORTSDIR}/java/jakarta-regexp \ - ${JAVALIBDIR}/commons-cli.jar:${PORTSDIR}/java/jakarta-commons-cli \ - ${JAVALIBDIR}/commons-dbcp.jar:${PORTSDIR}/java/jakarta-commons-dbcp \ - ${JAVALIBDIR}/commons-pool.jar:${PORTSDIR}/java/jakarta-commons-pool \ - ${JAVALIBDIR}/commons-collections.jar:${PORTSDIR}/java/jakarta-commons-collections - -.if !defined(WITHOUT_TESTS) -BUILD_DEPENDS+= ${JAVALIBDIR}/junit.jar:${PORTSDIR}/java/junit -.endif +EXTRACT_DEPENDS+= jar:${PORTSDIR}/java/diablo-jdk16 USE_JAVA= yes JAVA_VERSION= 1.5+ USE_ANT= yes MAKE_ENV= CLASSPATH="${JAVALIBDIR}" -ALL_TARGET= compile-apps +ALL_TARGET= package-biojava -PLIST_SUB+= VER=${DISTVERSION} - -JARFILES= apps-${DISTVERSION}.jar biojava.jar bytecode.jar +JARFILES= biojava.jar bytecode.jar PORTDOCS= biojava -SAMPLES= demos -WRKSRC=${WRKDIR} - -.if !defined(NOPORTDOCS) -ALL_TARGET+= javadocs-biojava -.endif -.if !defined(WITHOUT_SAMPLES) -ALL_TARGET+= compile-demos -PLIST_SUB+= INSTEX="" -.else -PLIST_SUB+= INSTEX="@comment " -.endif +PORTEXAMPLES= demos +EXTRACT_CMD= jar -xvf ${_DISTDIR}/${DISTFILES} +WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} -post-extract: - ${CP} ${_DISTDIR}/bytecode.jar ${WRKSRC} +do-extract: + @${RM} -rf ${WRKDIR} + @${MKDIR} ${WRKDIR} + @cd ${WRKDIR} && ${EXTRACT_CMD} .if !defined(WITHOUT_TESTS) regression-test: @@ -70,7 +41,6 @@ regression-test: ${SETENV} ${MAKE_ENV} ${ANT} ${MAKE_ARGS} runtests) .endif -# from textproc/xerces-j do-install: @${ECHO_MSG} -n ">> Installing JAR files in ${JAVAJARDIR}..." @${MKDIR} ${JAVAJARDIR} @@ -79,21 +49,24 @@ do-install: @${ECHO_MSG} -n " ${JARFILE}" .endfor @${ECHO_MSG} " [ DONE ]" + .if !defined(NOPORTDOCS) @${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..." @${MKDIR} ${DOCSDIR} @${INSTALL_DATA} ${WRKSRC}/LICENSE ${DOCSDIR} @${INSTALL_DATA} ${WRKSRC}/README ${DOCSDIR} - @cd ${WRKSRC}/ant-build/docs && \ + @cd ${WRKSRC}/doc && \ ${FIND} ${PORTDOCS} -type d -exec ${MKDIR} "${DOCSDIR}/{}" \; && \ ${FIND} ${PORTDOCS} -not -type d -exec ${INSTALL_DATA} "{}" "${DOCSDIR}/{}" \; @${ECHO_MSG} " [ DONE ]" .endif -.if !defined(WITHOUT_SAMPLES) - @${ECHO_MSG} -n ">> Installing demos in ${EXAMPLESDIR}..." - cd ${WRKSRC} && \ - ${FIND} ${SAMPLES} -type d -exec ${MKDIR} "${EXAMPLESDIR}/{}" \; && \ - ${FIND} ${SAMPLES} -not -type d -exec ${INSTALL_DATA} "{}" "${EXAMPLESDIR}/{}" \; + +.if !defined(NOPORTEXAMPLES) + @${ECHO_MSG} -n ">> Installing examples in ${EXAMPLESDIR}..." + @${MKDIR} ${EXAMPLESDIR} + cd ${WRKSRC}/doc && \ + ${FIND} ${PORTEXAMPLES} -type d -exec ${MKDIR} "${EXAMPLESDIR}/{}" \; && \ + ${FIND} ${PORTEXAMPLES} -not -type d -exec ${INSTALL_DATA} "{}" "${EXAMPLESDIR}/{}" \; @${ECHO_MSG} " [ DONE ]" .endif |