diff options
Diffstat (limited to 'biology/clustalw/files/patch-ae')
| -rw-r--r-- | biology/clustalw/files/patch-ae | 138 |
1 files changed, 138 insertions, 0 deletions
diff --git a/biology/clustalw/files/patch-ae b/biology/clustalw/files/patch-ae new file mode 100644 index 000000000000..b9e3678ea31b --- /dev/null +++ b/biology/clustalw/files/patch-ae @@ -0,0 +1,138 @@ +--- amenu.c-orig Tue Feb 6 03:15:01 2001 ++++ amenu.c Thu Mar 21 10:19:02 2002 +@@ -13,7 +13,8 @@ + static jmp_buf jmpbuf; + #ifndef VMS + #ifndef AIX +-#define BADSIG (void (*)())-1 ++/* #define BADSIG (void (*)())-1 */ ++#define BADSIG SIG_ERR + #endif + #endif + +@@ -176,7 +177,7 @@ + fprintf(stdout," H. HELP\n"); + fprintf(stdout," X. EXIT (leave program)\n\n\n"); + +- getstr("Your choice",lin1); ++ getstr("Your choice",lin1,MAXLINE); + + switch(toupper(*lin1)) { + case '1': seq_input(FALSE); +@@ -260,7 +261,7 @@ + fprintf(stdout," H. HELP\n"); + fprintf(stdout," or press [RETURN] to go back to main menu\n\n\n"); + +- getstr("Your choice",lin1); ++ getstr("Your choice",lin1,MAXLINE); + if(*lin1 == EOS) return; + + switch(toupper(*lin1)) +@@ -353,7 +354,7 @@ + fprintf(stdout," H. HELP\n"); + fprintf(stdout," or press [RETURN] to go back to main menu\n\n\n"); + +- getstr("Your choice",lin1); ++ getstr("Your choice",lin1,MAXLINE); + if(*lin1 == EOS) return; + + switch(toupper(*lin1)) +@@ -449,7 +450,7 @@ + fprintf(stdout,"\n\n"); + fprintf(stdout," H. HELP\n\n\n"); + +- getstr("Enter number (or [RETURN] to exit)",lin2); ++ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE); + if( *lin2 == EOS) { + return; + } +@@ -525,7 +526,7 @@ + fprintf(stdout,"--\n"); + + +- getstr("\n\nEnter number (or [RETURN] to exit)",lin2); ++ getstr("\n\nEnter number (or [RETURN] to exit)",lin2,MAXLINE); + if(*lin2 == EOS) return(output_struct_penalties); + + switch(toupper(*lin2)) +@@ -594,7 +595,7 @@ + fprintf(stdout," H. HELP\n"); + fprintf(stdout," or press [RETURN] to go back to main menu\n\n\n"); + +- getstr("Your choice",lin1); ++ getstr("Your choice",lin1,MAXLINE); + if(*lin1 == EOS) return; + + switch(toupper(*lin1)) +@@ -669,7 +670,7 @@ + fprintf(stdout,"\n"); + fprintf(stdout," H. HELP\n\n\n"); + +- getstr("Enter number (or [RETURN] to exit)",lin2); ++ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE); + if(*lin2 == EOS) return; + + switch(toupper(*lin2)) { +@@ -752,7 +753,7 @@ + fprintf(stdout,"\n"); + fprintf(stdout," H. HELP\n\n\n"); + +- getstr("Enter number (or [RETURN] to exit)",lin2); ++ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE); + if(*lin2 == EOS) return; + + switch(toupper(*lin2)) { +@@ -886,7 +887,7 @@ + + fprintf(stdout," H. HELP\n\n\n"); + +- getstr("Enter number (or [RETURN] to exit)",lin2); ++ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE); + if( *lin2 == EOS) { + if(dnaflag) { + dna_pw_go_penalty = pw_go_penalty; +@@ -1008,7 +1009,7 @@ + fprintf(stdout," 8. Protein Gap Parameters\n\n"); + fprintf(stdout," H. HELP\n\n\n"); + +- getstr("Enter number (or [RETURN] to exit)",lin2); ++ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE); + + if(*lin2 == EOS) { + if(dnaflag) { +@@ -1101,7 +1102,7 @@ + fprintf(stdout," 5. Toggle End Gap Separation :%s\n\n",(!use_endgaps) ? "OFF" : "ON"); + fprintf(stdout," H. HELP\n\n\n"); + +- getstr("Enter number (or [RETURN] to exit)",lin2); ++ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE); + + if(*lin2 == EOS) return; + +@@ -1115,7 +1116,7 @@ + case '3': + fprintf(stdout,"Hydrophilic Residues Currently: %s\n",hyd_residues); + +- getstr("Enter residues (or [RETURN] to quit)",lin1); ++ getstr("Enter residues (or [RETURN] to quit)",lin1,MAXLINE); + if (*lin1 != EOS) { + for (i=0;i<strlen(hyd_residues) && i<26;i++) { + c = lin1[i]; +@@ -1167,7 +1168,7 @@ + fprintf(stdout,"--\n"); + + +- getstr("\n\nEnter number (or [RETURN] to exit)",lin2); ++ getstr("\n\nEnter number (or [RETURN] to exit)",lin2,MAXLINE); + if(*lin2 == EOS) return(matn); + + i=toupper(*lin2)-'0'; +@@ -1202,7 +1203,7 @@ + fprintf(stdout,"\n%s\n",title); + strcpy(line,prompt); + strcat(line, "(y/n) ? [y]"); +- getstr(line,lin2); ++ getstr(line,lin2,80); + if ((*lin2 != 'n') && (*lin2 != 'N')) + return('y'); + else |