diff options
Diffstat (limited to 'biology/emboss/Makefile')
| -rw-r--r-- | biology/emboss/Makefile | 76 |
1 files changed, 74 insertions, 2 deletions
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile index 651c403ee3eb..5ffa3f400065 100644 --- a/biology/emboss/Makefile +++ b/biology/emboss/Makefile @@ -7,10 +7,13 @@ PORTNAME= emboss PORTVERSION= 1.7.0 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \ ftp://ftp.no.embnet.org/pub/EMBOSS/ -DISTNAME= EMBOSS-${PORTVERSION} +DISTFILES= ${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX} +DIST_SUBDIR= ${PORTNAME} +EXTRACT_ONLY= ${PORTNAME:U}-${PORTVERSION}${EXTRACT_SUFX} MAINTAINER= johann@egenetics.com @@ -20,12 +23,51 @@ LIB_DEPENDS= gd.1:${PORTSDIR}/graphics/gd \ USE_GMAKE= yes USE_LIBTOOL= yes USE_XLIB= yes +PLIST= ${WRKDIR}/pkg-plist -CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include/gd" \ +.if exists(${WRKDIRPREFIX}${.CURDIR}/Makefile.inc) +.include "${WRKDIRPREFIX}${.CURDIR}/Makefile.inc" +.endif + +CONFIGURE_ENV+= CPPFLAGS="-I${LOCALBASE}/include/gd" \ LIBS="-L${LOCALBASE}/lib" +SCRIPTS_ENV+= WRKDIRPREFIX="${WRKDIRPREFIX}" \ + MKDIR="${MKDIR}" \ + RM="${RM}" + +WRKSRC= ${WRKDIR}/${PORTNAME:U}-${PORTVERSION} +EMBASSY_WRKDIR= ${WRKSRC}/EMBASSY +PHYLIP_VERSION= 3.573c +MSE_VERSION= 0.0.4 +TOPO_VERSION= 0.1 +.for app in MSE PHYLIP TOPO +SCRIPTS_ENV+= ${app}_VERSION="${${app}_VERSION}" +.if defined(WITH_${app}) +APPLIST+= ${app} +PLISTS+= ${PKGDIR}/pkg-plist.${app} +${app}_WRKSRC= ${EMBASSY_WRKDIR}/${app}-${${app}_VERSION} +${app}_DISTFILE=${app}-${${app}_VERSION}${EXTRACT_SUFX} +DISTFILES+= ${${app}_DISTFILE} +.endif +.endfor +PLISTS+= ${PKGDIR}/pkg-plist DOC_DIRS= doc/manuals doc/tutorials doc/programs/text doc/programs/html +pre-fetch: + @ ${SETENV} ${SCRIPTS_ENV} ${SH} ${SCRIPTDIR}/configure.${PORTNAME} + +post-extract: +.for app in ${APPLIST} + @ ${MKDIR} ${EMBASSY_WRKDIR} + @ cd ${EMBASSY_WRKDIR} && ${EXTRACT_CMD} ${EXTRACT_BEFORE_ARGS} \ + ${_DISTDIR}/${${app}_DISTFILE} ${EXTRACT_AFTER_ARGS} + @ if [ `id -u` = 0 ]; then \ + ${CHMOD} -R ug-s ${${app}_WRKSRC}; \ + ${CHOWN} -R 0:0 ${${app}_WRKSRC}; \ + fi +.endfor + post-patch: .for DIR in ${DOC_DIRS} @ ${PERL} -pi.orig -e \ @@ -33,11 +75,41 @@ post-patch: ${WRKSRC}/${DIR}/Makefile.in .endfor +post-configure: +.for app in ${APPLIST} + @ (cd ${${app}_WRKSRC} && \ + ${SETENV} CC="${CC}" CXX="${CXX}" CFLAGS="${CFLAGS}" \ + CXXFLAGS="${CXXFLAGS}" \ + INSTALL="/usr/bin/install -c -o ${BINOWN} -g ${BINGRP}" \ + INSTALL_DATA="${INSTALL_DATA}" \ + INSTALL_PROGRAM="${INSTALL_PROGRAM}" \ + INSTALL_SCRIPT="${INSTALL_SCRIPT}" \ + ${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS}) +.endfor + +post-build: +.for app in ${APPLIST} + @ (cd ${${app}_WRKSRC} && \ + ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \ + ${MAKE_ARGS}) +.endfor + +pre-install: + @ ${CAT} ${PLISTS} > ${PLIST} + post-install: +.for app in ${APPLIST} + @ (cd ${${app}_WRKSRC} && \ + ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \ + ${MAKE_ARGS} ${INSTALL_TARGET}) +.endfor @ ${INSTALL_DATA} ${WRKSRC}/emboss/acd/emboss.default \ ${PREFIX}/etc/emboss.default.sample .if !defined(BATCH) @ ${CAT} ${PKGMESSAGE} .endif +post-clean: + @ ${RM} -f ${WRKDIRPREFIX}${.CURDIR}/Makefile.inc + .include <bsd.port.mk> |