diff options
Diffstat (limited to 'biology/emboss/Makefile')
| -rw-r--r-- | biology/emboss/Makefile | 32 |
1 files changed, 23 insertions, 9 deletions
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile index c47492c39ce5..1bdd97d5a0ee 100644 --- a/biology/emboss/Makefile +++ b/biology/emboss/Makefile @@ -6,7 +6,7 @@ # PORTNAME= emboss -PORTVERSION= 2.2.0 +PORTVERSION= 2.4.1 CATEGORIES= biology MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/ \ ftp://ftp.es.embnet.org/pub/software/emboss/EMBOSS/ \ @@ -19,8 +19,6 @@ MAINTAINER= wjv@FreeBSD.org LIB_DEPENDS= gd.2:${PORTSDIR}/graphics/gd -BROKEN= "Incorrect checksums" - USE_SUBMAKE= yes USE_GMAKE= yes GNU_CONFIGURE= yes @@ -63,6 +61,17 @@ PLIST_${app}= "@comment " PLIST_SUB+= PLIST_${app}=${PLIST_${app}} .endfor +# Jemboss support is a work in progress. +# +#.if defined(WITH_JEMBOSS) +#USE_JAVA= 1.3+ +#CONFIGURE_ARGS+= --with-java=${JAVA_HOME}/include \ +# --with-javaos=${JAVA_HOME}/include/${JAVA_OS:L} +#CONFIGURE_ENV+= PATH=${PATH}:${JAVA_HOME}/bin +#MAKE_ENV+= PATH=${PATH}:${JAVA_HOME}/bin +#JEMBOSS_WRKSRC= ${WRKSRC}/jemboss +#.endif + pre-fetch: @ ${SETENV} ${SCRIPTS_ENV} ${SH} ${SCRIPTDIR}/configure.${PORTNAME} @@ -86,28 +95,33 @@ post-patch: post-configure: .for app in ${APPLIST} - @ (cd ${${app}_WRKSRC} && \ + @ cd ${${app}_WRKSRC} && \ ${SETENV} CC="${CC}" CXX="${CXX}" CFLAGS="${CFLAGS}" \ CXXFLAGS="${CXXFLAGS}" \ INSTALL="/usr/bin/install -c -o ${BINOWN} -g ${BINGRP}" \ INSTALL_DATA="${INSTALL_DATA}" \ INSTALL_PROGRAM="${INSTALL_PROGRAM}" \ INSTALL_SCRIPT="${INSTALL_SCRIPT}" \ - ${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS}) + ${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS} .endfor post-build: .for app in ${APPLIST} - @ (cd ${${app}_WRKSRC} && \ + @ cd ${${app}_WRKSRC} && \ ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \ - ${MAKE_ARGS}) + ${MAKE_ARGS} .endfor +#.if defined(WITH_JEMBOSS) +# @ cd ${JEMBOSS_WRKSRC} && \ +# ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \ +# ${MAKE_ARGS} +#.endif post-install: .for app in ${APPLIST} - @ (cd ${${app}_WRKSRC} && \ + @ cd ${${app}_WRKSRC} && \ ${SETENV} ${MAKE_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} \ - ${MAKE_ARGS} ${INSTALL_TARGET}) + ${MAKE_ARGS} ${INSTALL_TARGET} .endfor @ ${PERL} -pe 's#%%PREFIX%%#${PREFIX}#' \ ${CONFIG_FILE} > ${PREFIX}/etc/emboss.default.sample && \ |