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-rw-r--r--biology/ncbi-toolkit/pkg-plist41
1 files changed, 35 insertions, 6 deletions
diff --git a/biology/ncbi-toolkit/pkg-plist b/biology/ncbi-toolkit/pkg-plist
index 3f1c702ba5c0..de99af6b54d4 100644
--- a/biology/ncbi-toolkit/pkg-plist
+++ b/biology/ncbi-toolkit/pkg-plist
@@ -1,7 +1,9 @@
%%PORTDOCS%%share/doc/ncbi-toolkit/FAQ.txt
+%%PORTDOCS%%share/doc/ncbi-toolkit/README-qm
%%PORTDOCS%%share/doc/ncbi-toolkit/README.asn2xml
%%PORTDOCS%%share/doc/ncbi-toolkit/README.bcl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.bls
+%%PORTDOCS%%share/doc/ncbi-toolkit/README.fastacmd
%%PORTDOCS%%share/doc/ncbi-toolkit/README.formatdb
%%PORTDOCS%%share/doc/ncbi-toolkit/README.imp
%%PORTDOCS%%share/doc/ncbi-toolkit/README.mbl
@@ -9,11 +11,13 @@
%%PORTDOCS%%share/doc/ncbi-toolkit/README.pbl
%%PORTDOCS%%share/doc/ncbi-toolkit/README.rps
%%PORTDOCS%%share/doc/ncbi-toolkit/README.sdk
+%%PORTDOCS%%share/doc/ncbi-toolkit/asn2gb.txt
+%%PORTDOCS%%share/doc/ncbi-toolkit/asn2gph.txt
+%%PORTDOCS%%share/doc/ncbi-toolkit/dispatcher.html
%%PORTDOCS%%share/doc/ncbi-toolkit/fa2htgs/README
%%PORTDOCS%%share/doc/ncbi-toolkit/fa2htgs/updateHtgsDoc
%%PORTDOCS%%share/doc/ncbi-toolkit/firedialog.gif
%%PORTDOCS%%share/doc/ncbi-toolkit/firewall.html
-%%PORTDOCS%%share/doc/ncbi-toolkit/firewall.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/fwd_check.sh
%%PORTDOCS%%share/doc/ncbi-toolkit/images/ncbi_sequin.css
%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn01.gif
@@ -41,14 +45,14 @@
%%PORTDOCS%%share/doc/ncbi-toolkit/ncbixml.txt
%%PORTDOCS%%share/doc/ncbi-toolkit/sdk.doc
%%PORTDOCS%%share/doc/ncbi-toolkit/sequin.htm
+%%PORTDOCS%%share/doc/ncbi-toolkit/tbl2asn.txt
bin/Nentrez
bin/Psequin
bin/asn2ff
+bin/asn2gb
bin/asn2xml
bin/asndhuff
bin/asntool
-bin/bl2seq
-bin/blast.REAL
bin/blastall
bin/blastcl3
bin/blastclust
@@ -57,8 +61,11 @@ bin/cdscan
bin/checksub
bin/copymat
bin/ddv
+bin/demo_regexp
+bin/demo_regexp_grep
bin/dosimple
bin/entrcmd
+bin/entrez2
bin/errhdr
bin/fa2htgs
bin/fastacmd
@@ -104,9 +111,11 @@ lib/ncbi/libncbitxc2.a
lib/ncbi/libnetblast.a
lib/ncbi/libnetcli.a
lib/ncbi/libnetentr.a
+lib/ncbi/libregexp.a
lib/ncbi/libvibgif.a
lib/ncbi/libvibnet.a
lib/ncbi/libvibrant.a
+include/ncbi/connect/connect_export.h
include/ncbi/connect/ncbi_ansi_ext.h
include/ncbi/connect/ncbi_buffer.h
include/ncbi/connect/ncbi_comm.h
@@ -115,9 +124,14 @@ include/ncbi/connect/ncbi_connection.h
include/ncbi/connect/ncbi_connector.h
include/ncbi/connect/ncbi_connutil.h
include/ncbi/connect/ncbi_core.h
+include/ncbi/connect/ncbi_core_c.h
+include/ncbi/connect/ncbi_dispd.h
include/ncbi/connect/ncbi_file_connector.h
include/ncbi/connect/ncbi_heapmgr.h
+include/ncbi/connect/ncbi_host_info.h
+include/ncbi/connect/ncbi_host_infop.h
include/ncbi/connect/ncbi_http_connector.h
+include/ncbi/connect/ncbi_lbsmd.h
include/ncbi/connect/ncbi_memory_connector.h
include/ncbi/connect/ncbi_priv.h
include/ncbi/connect/ncbi_sendmail.h
@@ -126,12 +140,17 @@ include/ncbi/connect/ncbi_server_infop.h
include/ncbi/connect/ncbi_service.h
include/ncbi/connect/ncbi_service_connector.h
include/ncbi/connect/ncbi_servicep.h
-include/ncbi/connect/ncbi_servicep_dispd.h
-include/ncbi/connect/ncbi_servicep_lbsmd.h
include/ncbi/connect/ncbi_socket.h
include/ncbi/connect/ncbi_socket_connector.h
include/ncbi/connect/ncbi_types.h
include/ncbi/connect/ncbi_util.h
+include/ncbi/FSpCompat.h
+include/ncbi/FullPath.h
+include/ncbi/MoreCarbonAccessors.h
+include/ncbi/MoreFilesExtras.h
+include/ncbi/MoreFilesX.h
+include/ncbi/Optimization.h
+include/ncbi/OptimizationEnd.h
include/ncbi/PubStructAsn.h
include/ncbi/a2ferr.h
include/ncbi/a2ferrdf.h
@@ -161,7 +180,11 @@ include/ncbi/asn2gnbp.h
include/ncbi/asn2graphic.h
include/ncbi/asn2graphicp.h
include/ncbi/asnacces.h
+include/ncbi/asngbseq.h
+include/ncbi/asntseq.h
include/ncbi/blast.h
+include/ncbi/blastconcat.h
+include/ncbi/blastconcatdef.h
include/ncbi/asnalign.h
include/ncbi/asnbibli.h
include/ncbi/asnblock.h
@@ -382,6 +405,7 @@ include/ncbi/objent2.h
include/ncbi/objentr.h
include/ncbi/objfdef.h
include/ncbi/objfeat.h
+include/ncbi/objgbseq.h
include/ncbi/objgen.h
include/ncbi/objloc.h
include/ncbi/objmdrs.h
@@ -404,9 +428,14 @@ include/ncbi/objseq.h
include/ncbi/objsset.h
include/ncbi/objsub.h
include/ncbi/objtax1.h
+include/ncbi/objtseq.h
include/ncbi/odlbox.h
include/ncbi/panels.h
include/ncbi/parsegb.h
+include/ncbi/pcre.h
+include/ncbi/pcre_config.h
+include/ncbi/pcre_internal.h
+include/ncbi/pcreposix.h
include/ncbi/pdiagnos.h
include/ncbi/pgppop.h
include/ncbi/pictur3d.h
@@ -457,6 +486,7 @@ include/ncbi/seqgraph.h
include/ncbi/seqgrphx.h
include/ncbi/seqmgr.h
include/ncbi/seqmtrx.h
+include/ncbi/seqpanel.h
include/ncbi/seqpcc.h
include/ncbi/seqport.h
include/ncbi/seqscrl.h
@@ -552,7 +582,6 @@ include/ncbi/vsmpriv.h
include/ncbi/vsmutil.h
include/ncbi/wrpsb.h
include/ncbi/wrpsbtool.h
-include/ncbi/wwwblast.h
include/ncbi/xmlblast.h
share/ncbi-toolkit/BLOSUM45
share/ncbi-toolkit/BLOSUM62