diff options
Diffstat (limited to 'biology/p5-bioperl-devel')
| -rw-r--r-- | biology/p5-bioperl-devel/Makefile | 230 | ||||
| -rw-r--r-- | biology/p5-bioperl-devel/distinfo | 5 | ||||
| -rw-r--r-- | biology/p5-bioperl-devel/files/ext.msg | 16 | ||||
| -rw-r--r-- | biology/p5-bioperl-devel/files/patch-aa | 9 | ||||
| -rw-r--r-- | biology/p5-bioperl-devel/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/p5-bioperl-devel/pkg-descr | 12 | ||||
| -rw-r--r-- | biology/p5-bioperl-devel/pkg-plist | 292 |
7 files changed, 565 insertions, 0 deletions
diff --git a/biology/p5-bioperl-devel/Makefile b/biology/p5-bioperl-devel/Makefile new file mode 100644 index 000000000000..2a1fd99762de --- /dev/null +++ b/biology/p5-bioperl-devel/Makefile @@ -0,0 +1,230 @@ +# New ports collection makefile for: p5-bioperl-devel +# Date created: 13 August 2001 +# Whom: Johann Visagie <wjv@FreeBSD.org> +# +# $FreeBSD$ +# + +PORTNAME= bioperl +PORTVERSION= 0.9.0 +CATEGORIES= biology perl5 +MASTER_SITES= ftp://bioperl.org/pub/DIST/ \ + http://bioperl.org/Core/Latest/ +PKGNAMEPREFIX= p5- +PKGNAMESUFFIX= -devel +DISTFILES= ${DISTNAME}${EXTRACT_SUFX} + +MAINTAINER= wjv@FreeBSD.org + +# These are all run-time dependencies, but listing them in ${BUILD_DEPENDS} +# prevents a flood of build-time warnings. +BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Ace.pm:${PORTSDIR}/biology/p5-AcePerl \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/XML/Parser.pm:${PORTSDIR}/textproc/p5-XML-Parser \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/File/Temp.pm:${PORTSDIR}/devel/p5-File-Temp \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/HTTP/Request/Common.pm:${PORTSDIR}/www/p5-libwww \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/IO/Scalar.pm:${PORTSDIR}/devel/p5-IO-stringy \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/IO/String.pm:${PORTSDIR}/devel/p5-IO-String \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/LWP/UserAgent.pm:${PORTSDIR}/www/p5-libwww \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Node.pm:${PORTSDIR}/textproc/p5-XML-Node \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Parser/PerlSAX.pm:${PORTSDIR}/textproc/p5-libxml \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Twig.pm:${PORTSDIR}/textproc/p5-XML-Twig \ + ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Writer.pm:${PORTSDIR}/textproc/p5-XML-Writer +RUN_DEPENDS= ${BUILD_DEPENDS} + +PERL_CONFIGURE= YES + +.if defined(WITH_CORBA) +WITH_CORBA_CLIENT= YES +WITH_CORBA_SERVER= YES +.endif + +EXT_VERSION= 0.6 +CORBA_CLIENT_VERSION= 0.2 +CORBA_SERVER_VERSION= 0.2 +GUI_VERSION= 0.7 +DISTFILES+= bioperl-ext-${EXT_VERSION}${EXTRACT_SUFX} +EXT_WRKSRC= ${WRKDIR}/bioperl-ext-06/Bio/Ext/Align + +.if defined(WITH_CORBA_CLIENT) +BUILD_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit +RUN_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit +.endif +.if defined(WITH_CORBA_SERVER) +BUILD_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit +RUN_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit +.endif +.if defined(WITH_GUI) +RUN_DEPENDS+= ptksh:${PORTSDIR}/x11-toolkits/p5-Tk +.endif + +.for ext in CORBA_CLIENT CORBA_SERVER GUI +.if defined(WITH_${ext}) +EXTLIST+= ${ext} +DISTFILES+= bioperl-${ext:L:S/_/-/}-${${ext}_VERSION}${EXTRACT_SUFX} +${ext}_WRKSRC= ${WRKDIR}/bioperl-${ext:L:S/_/-/} +PLIST_${ext}= "" +.else +PLIST_${ext}= "@comment " +.endif +PLIST_SUB+= PLIST_${ext}=${PLIST_${ext}} +.endfor + +MAN3= Bio::AlignIO.3 Bio::AlignIO::bl2seq.3 \ + Bio::AlignIO::clustalw.3 Bio::AlignIO::fasta.3 \ + Bio::AlignIO::mase.3 Bio::AlignIO::meme.3 Bio::AlignIO::msf.3 \ + Bio::AlignIO::nexus.3 Bio::AlignIO::pfam.3 \ + Bio::AlignIO::phylip.3 Bio::AlignIO::prodom.3 \ + Bio::AlignIO::selex.3 Bio::AlignIO::stockholm.3 \ + Bio::Annotation.3 Bio::Annotation::Comment.3 \ + Bio::Annotation::DBLink.3 Bio::Annotation::Reference.3 \ + Bio::DB::Ace.3 Bio::DB::EMBL.3 Bio::DB::Fasta.3 \ + Bio::DB::GDB.3 Bio::DB::GFF.3 Bio::DB::GFF::Adaptor::dbi.3 \ + Bio::DB::GFF::Aggregator.3 \ + Bio::DB::GFF::Aggregator::alignment.3 \ + Bio::DB::GFF::Aggregator::clone.3 \ + Bio::DB::GFF::Aggregator::none.3 \ + Bio::DB::GFF::Aggregator::transcript.3 \ + Bio::DB::GFF::Featname.3 Bio::DB::GFF::Feature.3 \ + Bio::DB::GFF::Homol.3 Bio::DB::GFF::RelSegment.3 \ + Bio::DB::GFF::Segment.3 Bio::DB::GFF::Typename.3 \ + Bio::DB::GenBank.3 Bio::DB::GenPept.3 Bio::DB::NCBIHelper.3 \ + Bio::DB::RandomAccessI.3 Bio::DB::SeqI.3 Bio::DB::SwissProt.3 \ + Bio::DB::Universal.3 Bio::DB::UpdateableSeqI.3 \ + Bio::DB::WebDBSeqI.3 Bio::DBLinkContainerI.3 \ + Bio::Factory::ApplicationFactoryI.3 \ + Bio::Factory::DriverFactory.3 Bio::Factory::EMBOSS.3 \ + Bio::Factory::SeqAnalysisParserFactory.3 \ + Bio::Factory::SeqAnalysisParserFactoryI.3 \ + Bio::Index::Abstract.3 Bio::Index::AbstractSeq.3 \ + Bio::Index::EMBL.3 Bio::Index::Fasta.3 Bio::Index::GenBank.3 \ + Bio::Index::SwissPfam.3 Bio::Index::Swissprot.3 \ + Bio::LiveSeq::AARange.3 Bio::LiveSeq::Chain.3 \ + Bio::LiveSeq::ChainI.3 Bio::LiveSeq::DNA.3 \ + Bio::LiveSeq::Exon.3 Bio::LiveSeq::Gene.3 \ + Bio::LiveSeq::IO::BioPerl.3 Bio::LiveSeq::IO::Loader.3 \ + Bio::LiveSeq::IO::SRS.3 Bio::LiveSeq::Intron.3 \ + Bio::LiveSeq::Mutation.3 Bio::LiveSeq::Mutator.3 \ + Bio::LiveSeq::Prim_Transcript.3 Bio::LiveSeq::Range.3 \ + Bio::LiveSeq::Repeat_Region.3 Bio::LiveSeq::Repeat_Unit.3 \ + Bio::LiveSeq::SeqI.3 Bio::LiveSeq::Transcript.3 \ + Bio::LiveSeq::Translation.3 Bio::LocatableSeq.3 \ + Bio::Location::AvWithinCoordPolicy.3 \ + Bio::Location::CoordinatePolicyI.3 Bio::Location::Fuzzy.3 \ + Bio::Location::FuzzyLocationI.3 \ + Bio::Location::NarrowestCoordPolicy.3 Bio::Location::Simple.3 \ + Bio::Location::Split.3 Bio::Location::SplitLocationI.3 \ + Bio::Location::WidestCoordPolicy.3 Bio::LocationI.3 \ + Bio::PrimarySeq.3 Bio::PrimarySeqI.3 Bio::Range.3 \ + Bio::RangeI.3 Bio::Root::Err.3 Bio::Root::Global.3 \ + Bio::Root::IO.3 Bio::Root::IOManager.3 Bio::Root::Object.3 \ + Bio::Root::RootI.3 Bio::Root::Utilities.3 Bio::Root::Vector.3 \ + Bio::Root::Xref.3 Bio::SearchDist.3 Bio::Seq.3 \ + Bio::Seq::LargePrimarySeq.3 Bio::Seq::LargeSeq.3 \ + Bio::Seq::RichSeq.3 Bio::Seq::RichSeqI.3 \ + Bio::SeqAnalysisParserI.3 Bio::SeqFeature::Computation.3 \ + Bio::SeqFeature::Exon.3 Bio::SeqFeature::FeaturePair.3 \ + Bio::SeqFeature::Gene::Exon.3 Bio::SeqFeature::Gene::ExonI.3 \ + Bio::SeqFeature::Gene::GeneStructure.3 \ + Bio::SeqFeature::Gene::GeneStructureI.3 \ + Bio::SeqFeature::Gene::Transcript.3 \ + Bio::SeqFeature::Gene::TranscriptI.3 \ + Bio::SeqFeature::Generic.3 Bio::SeqFeature::Intron.3 \ + Bio::SeqFeature::PolyA.3 Bio::SeqFeature::Promoter.3 \ + Bio::SeqFeature::Similarity.3 \ + Bio::SeqFeature::SimilarityPair.3 Bio::SeqFeature::UTR3.3 \ + Bio::SeqFeature::UTR5.3 Bio::SeqFeatureI.3 Bio::SeqI.3 \ + Bio::SeqIO.3 Bio::SeqIO::FTHelper.3 Bio::SeqIO::MultiFile.3 \ + Bio::SeqIO::ace.3 Bio::SeqIO::embl.3 Bio::SeqIO::fasta.3 \ + Bio::SeqIO::game.3 Bio::SeqIO::game::featureHandler.3 \ + Bio::SeqIO::game::idHandler.3 Bio::SeqIO::game::seqHandler.3 \ + Bio::SeqIO::gcg.3 Bio::SeqIO::genbank.3 \ + Bio::SeqIO::largefasta.3 Bio::SeqIO::pir.3 Bio::SeqIO::raw.3 \ + Bio::SeqIO::scf.3 Bio::SeqIO::swiss.3 Bio::SeqUtils.3 \ + Bio::SimpleAlign.3 Bio::Species.3 Bio::Tools::AlignFactory.3 \ + Bio::Tools::AnalysisResult.3 Bio::Tools::BPbl2seq.3 \ + Bio::Tools::BPlite.3 Bio::Tools::BPlite::Iteration.3 \ + Bio::Tools::BPpsilite.3 Bio::Tools::Blast.3 \ + Bio::Tools::Blast::HSP.3 Bio::Tools::Blast::HTML.3 \ + Bio::Tools::Blast::Run::LocalBlast.3 \ + Bio::Tools::Blast::Run::Webblast.3 Bio::Tools::Blast::Sbjct.3 \ + Bio::Tools::CodonTable.3 Bio::Tools::EPCR.3 \ + Bio::Tools::ESTScan.3 Bio::Tools::Fasta.3 Bio::Tools::GFF.3 \ + Bio::Tools::Genemark.3 Bio::Tools::Genscan.3 \ + Bio::Tools::Grail.3 Bio::Tools::HMMER::Domain.3 \ + Bio::Tools::HMMER::Results.3 Bio::Tools::HMMER::Set.3 \ + Bio::Tools::IUPAC.3 Bio::Tools::MZEF.3 Bio::Tools::OddCodes.3 \ + Bio::Tools::Prediction::Exon.3 Bio::Tools::Prediction::Gene.3 \ + Bio::Tools::RestrictionEnzyme.3 \ + Bio::Tools::Run::Alignment::Clustalw.3 \ + Bio::Tools::Run::Alignment::TCoffee.3 \ + Bio::Tools::Run::EMBOSSApplication.3 \ + Bio::Tools::Run::RemoteBlast.3 \ + Bio::Tools::Run::StandAloneBlast.3 Bio::Tools::SeqAnal.3 \ + Bio::Tools::SeqPattern.3 Bio::Tools::SeqStats.3 \ + Bio::Tools::SeqWords.3 Bio::Tools::Sigcleave.3 \ + Bio::Tools::Sim4::Exon.3 Bio::Tools::Sim4::Results.3 \ + Bio::Tools::WWW.3 Bio::Tools::pSW.3 Bio::UnivAln.3 \ + Bio::Variation::AAChange.3 Bio::Variation::AAReverseMutate.3 \ + Bio::Variation::Allele.3 Bio::Variation::DNAMutation.3 \ + Bio::Variation::IO.3 Bio::Variation::IO::flat.3 \ + Bio::Variation::IO::xml.3 Bio::Variation::RNAChange.3 \ + Bio::Variation::SeqDiff.3 Bio::Variation::VariantI.3 \ + bioback.3 biodesign.3 bioperl.3 biostart.3 bptutorial.3 +.if defined(WITH_CORBA_CLIENT) +MAN3+= Bio::CorbaClient::PrimarySeq.3 Bio::CorbaClient::Seq.3 \ + Bio::CorbaClient::SeqFeature.3 Bio::CorbaClient::Base.3 \ + Bio::SeqIO::biocorba.3 Bio::DB::Biocorba.3 \ + Bio::CorbaClient::Client.3 Bio::CorbaClient::ORB.3 +.endif +.if defined(WITH_CORBA_SERVER) +MAN3+= Bio::CorbaServer::BioEnv.3 Bio::CorbaServer::AnonymousSeq.3 \ + Bio::CorbaServer::PrimarySeq.3 Bio::CorbaServer::SeqFeature.3 \ + Bio::CorbaServer::PrimarySeqDB.3 \ + Bio::CorbaServer::PrimarySeqIterator.3 \ + Bio::CorbaServer::PrimarySeqVector.3 \ + Bio::CorbaServer::Seq.3 \ + Bio::CorbaServer::SeqDB.3 Bio::CorbaServer::Base.3 \ + Bio::CorbaServer::SeqFeatureIterator.3 \ + Bio::CorbaServer::SeqFeatureVector.3 \ + Bio::CorbaServer::Server.3 +.endif +.if defined(WITH_GUI) +MAN3+= Bio::Tk::HitDisplay.3 Bio::Tk::SeqCanvas.3 +.endif +MANPREFIX= ${PREFIX}/lib/perl5/${PERL_VERSION} + +pre-fetch: +.if !defined(BATCH) && (!defined(WITH_CORBA_CLIENT) || \ + !defined(WITH_CORBA_SERVER) || !defined(WITH_GUI)) + @ ${CAT} ${FILESDIR}/ext.msg +.endif + +post-configure: + @ cd ${EXT_WRKSRC} && \ + ${SETENV} ${CONFIGURE_ENV} \ + ${PERL5} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS} + +.for ext in ${EXTLIST} + @ cd ${${ext}_WRKSRC} && \ + ${PERL5} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS} +.endfor + +post-build: + @ cd ${EXT_WRKSRC} && \ + ${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET} +.for ext in ${EXTLIST} + @ cd ${${ext}_WRKSRC} && ${SETENV} ${MAKE_ENV} \ + ${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET} +.endfor + +post-install: + @ cd ${EXT_WRKSRC} && \ + ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} \ + ${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET} +.for ext in ${EXTLIST} + @ cd ${${ext}_WRKSRC} && \ + ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} \ + ${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET} +.endfor + +.include <bsd.port.mk> diff --git a/biology/p5-bioperl-devel/distinfo b/biology/p5-bioperl-devel/distinfo new file mode 100644 index 000000000000..a47c95f86d59 --- /dev/null +++ b/biology/p5-bioperl-devel/distinfo @@ -0,0 +1,5 @@ +MD5 (bioperl-0.9.0.tar.gz) = 749b4ad17ed6aa35a46226cd5a54ca3d +MD5 (bioperl-ext-0.6.tar.gz) = 5bf87e0cf94d3d41fabbfd209971d240 +MD5 (bioperl-corba-client-0.2.tar.gz) = 9635488e779d771bc5f976bf56826590 +MD5 (bioperl-corba-server-0.2.tar.gz) = d5e3353ed6c8717de06e0db8f5bbc0f5 +MD5 (bioperl-gui-0.7.tar.gz) = 07b50934c5dc8fcbbb89d2d35c758dea diff --git a/biology/p5-bioperl-devel/files/ext.msg b/biology/p5-bioperl-devel/files/ext.msg new file mode 100644 index 000000000000..1ba9af2f5f84 --- /dev/null +++ b/biology/p5-bioperl-devel/files/ext.msg @@ -0,0 +1,16 @@ +--------------------------------------------------------------------------- +This port includes support for a number of optional extensions to Bioperl. +To build the port with these extensions, set the corresponding variables: + +To build with client-side CORBA support: set WITH_CORBA_CLIENT +To build with server-side CORBA support: set WITH_CORBA_SERVER +To build with (experimental) GUI support: set WITH_GUI + +Additionally, the variable WITH_CORBA implies both WITH_CORBA_CLIENT and +WITH_CORBA_SERVER. + +For example, to build and install the Bioperl port with all the currently +available optional extensions: + + make WITH_CORBA=yes WITH_GUI=yes install +--------------------------------------------------------------------------- diff --git a/biology/p5-bioperl-devel/files/patch-aa b/biology/p5-bioperl-devel/files/patch-aa new file mode 100644 index 000000000000..4aecbfe2a166 --- /dev/null +++ b/biology/p5-bioperl-devel/files/patch-aa @@ -0,0 +1,9 @@ +--- ../bioperl-ext-06/Bio/Ext/Align/libs/makefile.orig Thu Sep 16 15:33:08 1999 ++++ ../bioperl-ext-06/Bio/Ext/Align/libs/makefile Fri Jul 28 11:57:27 2000 +@@ -47,5 +47,5 @@ + # For NetBSD or Sun (solaris) installs, add -fPIC to the CFLAGS lines + # + +-CFLAGS = -c -O ++CFLAGS+= -c -O -fPIC + CC = cc diff --git a/biology/p5-bioperl-devel/pkg-comment b/biology/p5-bioperl-devel/pkg-comment new file mode 100644 index 000000000000..bb7e0ab0ff27 --- /dev/null +++ b/biology/p5-bioperl-devel/pkg-comment @@ -0,0 +1 @@ +A collection of Perl modules for bioinformatics (developer's release) diff --git a/biology/p5-bioperl-devel/pkg-descr b/biology/p5-bioperl-devel/pkg-descr new file mode 100644 index 000000000000..56b90dfeb956 --- /dev/null +++ b/biology/p5-bioperl-devel/pkg-descr @@ -0,0 +1,12 @@ +The Bioperl Project is an international association of developers of open +source Perl tools for bioinformatics, genomics and life science research. + +Bioperl is a collection of object-oriented Perl modules created by the +Bioperl Project. It forms the basis of a large number of bioinformatics and +genomics applications. + +This port represents an unstable developer's release of Bioperl. + +WWW: http://bioperl.org/ + +-- Johann Visagie <wjv@FreeBSD.org> diff --git a/biology/p5-bioperl-devel/pkg-plist b/biology/p5-bioperl-devel/pkg-plist new file mode 100644 index 000000000000..0cf33753f3ef --- /dev/null +++ b/biology/p5-bioperl-devel/pkg-plist @@ -0,0 +1,292 @@ +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Base.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Client.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/ORB.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/PrimarySeq.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Seq.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/SeqFeature.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/DB/Biocorba.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/SeqIO/biocorba.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/AnonymousSeq.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Base.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/BioEnv.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeq.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqDB.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqIterator.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqVector.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Seq.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqDB.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeature.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeatureIterator.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeatureVector.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Server.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/AnnotMap.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/BioTkPerl8_1.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/GO_Browser.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/HitDisplay.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/README +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/SeqCanvas.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/Tkpsh.pl +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Map.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_SeqSubs.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Sequence.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Utilities.pm +%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/%%PERL_ARCH%%/auto/Bio/Tk/.packlist +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext/Align.pm +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/.packlist +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/Align.bs +lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/Align.so +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/bl2seq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/clustalw.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/fasta.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/mase.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/meme.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/msf.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/nexus.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/pfam.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/phylip.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/prodom.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/selex.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO/stockholm.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/Comment.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/DBLink.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation/Reference.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Ace.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/EMBL.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Fasta.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GDB.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor/dbi.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor/dbi/mysql.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator/alignment.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator/clone.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator/none.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator/transcript.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Featname.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Feature.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Homol.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/RelSegment.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Segment.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Typename.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Util/Binning.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Util/Rearrange.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GenBank.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GenPept.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/NCBIHelper.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/RandomAccessI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/SeqI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/SwissProt.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Universal.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/UpdateableSeqI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/WebDBSeqI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/DBLinkContainerI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/ApplicationFactoryI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/DriverFactory.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/EMBOSS.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/SeqAnalysisParserFactory.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory/SeqAnalysisParserFactoryI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Abstract.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/AbstractSeq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/EMBL.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Fasta.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/GenBank.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/SwissPfam.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Index/Swissprot.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/AARange.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Chain.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/ChainI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/DNA.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Exon.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Gene.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/IO/BioPerl.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/IO/Loader.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/IO/SRS.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Intron.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Mutation.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Mutator.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Prim_Transcript.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Range.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Repeat_Region.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Repeat_Unit.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/SeqI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Transcript.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/Translation.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LocatableSeq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/AvWithinCoordPolicy.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/CoordinatePolicyI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/Fuzzy.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/FuzzyLocationI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/NarrowestCoordPolicy.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/Simple.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/Split.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/SplitLocationI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Location/WidestCoordPolicy.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/LocationI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/PrimarySeq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/PrimarySeqI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Range.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/RangeI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Err.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Global.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/IO.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/IOManager.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Object.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/RootI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Utilities.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Vector.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Root/Xref.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SearchDist.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq/LargePrimarySeq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq/LargeSeq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq/RichSeq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq/RichSeqI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqAnalysisParserI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Computation.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Exon.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/FeaturePair.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/Exon.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/ExonI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/GeneStructure.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/GeneStructureI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/Transcript.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene/TranscriptI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Generic.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Intron.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/PolyA.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Promoter.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Similarity.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/SimilarityPair.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/UTR3.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/UTR5.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeatureI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqI.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/FTHelper.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/MultiFile.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/ace.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/embl.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/fasta.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game/featureHandler.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game/idHandler.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game/seqHandler.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/gcg.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/genbank.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/largefasta.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/pir.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/raw.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/scf.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/swiss.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqUtils.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/SimpleAlign.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Species.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/AlignFactory.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/AnalysisResult.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPbl2seq.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite/HSP.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite/Iteration.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite/Sbjct.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPpsilite.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/CHANGES +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/HSP.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/HTML.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/README +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/LocalBlast.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/Webblast.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run/postclient.pl +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Sbjct.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/CodonTable.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/EPCR.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/ESTScan.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Fasta.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/GFF.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Genemark.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Genscan.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Grail.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Domain.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Results.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER/Set.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/IUPAC.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/MZEF.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/OddCodes.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Prediction/Exon.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Prediction/Gene.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/RestrictionEnzyme.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/Alignment/Clustalw.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/Alignment/TCoffee.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/EMBOSSApplication.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/RemoteBlast.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/StandAloneBlast.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqAnal.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqPattern.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqStats.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/SeqWords.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sigcleave.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4/Exon.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4/Results.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/WWW.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/pSW.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/UnivAln.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/AAChange.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/AAReverseMutate.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/Allele.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/DNAMutation.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO/flat.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO/xml.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/README +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/RNAChange.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/SeqDiff.pm +lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/VariantI.pm +lib/perl5/site_perl/%%PERL_VER%%/bioback.pod +lib/perl5/site_perl/%%PERL_VER%%/biodesign.pod +lib/perl5/site_perl/%%PERL_VER%%/bioperl.pod +lib/perl5/site_perl/%%PERL_VER%%/biostart.pod +lib/perl5/site_perl/%%PERL_VER%%/bptutorial.pl +lib/perl5/site_perl/5.6.0/%%PERL_ARCH%%/auto/Bio/.packlist +%%PLIST_GUI%%@dirrm lib/perl5/site_perl/5.6.0/mach/auto/Bio/Tk +%%PLIST_GUI%%@dirrm lib/perl5/site_perl/5.6.0/Bio/Tk +%%PLIST_CORBA_SERVER%%@dirrm lib/perl5/site_perl/5.6.0/Bio/CorbaServer +%%PLIST_CORBA_CLIENT%%@dirrm lib/perl5/site_perl/5.6.0/Bio/CorbaClient +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4 +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run/Alignment +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Run +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Prediction +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/HMMER +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast/Run +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Blast +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/BPlite +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature/Gene +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqFeature +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Seq +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Root +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Location +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq/IO +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/LiveSeq +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Index +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Factory +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Util +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Aggregator +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor/dbi +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF/Adaptor +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/GFF +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/DB +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Annotation +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/AlignIO +@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext +@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio |