diff options
Diffstat (limited to 'biology/p5-bioperl/Makefile')
| -rw-r--r-- | biology/p5-bioperl/Makefile | 62 |
1 files changed, 27 insertions, 35 deletions
diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile index 6eda916ff372..3430fe8c7d1e 100644 --- a/biology/p5-bioperl/Makefile +++ b/biology/p5-bioperl/Makefile @@ -3,7 +3,7 @@ PORTNAME= bioperl PORTVERSION= 1.6.924 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CJFIELDS @@ -16,51 +16,47 @@ COMMENT= Collection of Perl modules for bioinformatics LICENSE= ART10 GPLv1 LICENSE_COMB= dual -BUILD_DEPENDS= p5-Text-Tabs+Wrap>=0:${PORTSDIR}/textproc/p5-Text-Tabs+Wrap \ +BUILD_DEPENDS= p5-Algorithm-Munkres>=0:${PORTSDIR}/math/p5-Algorithm-Munkres \ + p5-Array-Compare>=0:${PORTSDIR}/misc/p5-Array-Compare \ p5-Bio-ASN1-EntrezGene>=0:${PORTSDIR}/biology/p5-Bio-ASN1-EntrezGene \ p5-Class-AutoClass>=0:${PORTSDIR}/devel/p5-Class-AutoClass \ + p5-Clone>=0:${PORTSDIR}/devel/p5-Clone \ + p5-Convert-Binary-C>=0:${PORTSDIR}/converters/p5-Convert-Binary-C \ p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \ - p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \ - p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \ + p5-DBD-mysql>=0:${PORTSDIR}/databases/p5-DBD-mysql \ + p5-Error>=0:${PORTSDIR}/lang/p5-Error \ + p5-GD>=0:${PORTSDIR}/graphics/p5-GD \ p5-GD-SVG>=0:${PORTSDIR}/graphics/p5-GD-SVG \ p5-Graph>=0:${PORTSDIR}/math/p5-Graph \ - p5-libwww>=0:${PORTSDIR}/www/p5-libwww \ + p5-GraphViz>=0:${PORTSDIR}/graphics/p5-GraphViz \ + p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \ + p5-HTML-TableExtract>=2:${PORTSDIR}/www/p5-HTML-TableExtract \ p5-IO-stringy>=0:${PORTSDIR}/devel/p5-IO-stringy \ p5-IO-String>=0:${PORTSDIR}/devel/p5-IO-String \ - p5-libwww>=0:${PORTSDIR}/www/p5-libwww \ + p5-Math-Random>=0:${PORTSDIR}/math/p5-Math-Random \ + p5-PostScript>=0:${PORTSDIR}/print/p5-PostScript \ p5-SOAP-Lite>=0:${PORTSDIR}/net/p5-SOAP-Lite \ + p5-Set-Scalar>=0:${PORTSDIR}/devel/p5-Set-Scalar \ + p5-Sort-Naturally>=1:${PORTSDIR}/textproc/p5-Sort-Naturally \ + p5-Spreadsheet-ParseExcel>=0:${PORTSDIR}/textproc/p5-Spreadsheet-ParseExcel \ p5-SVG>=0:${PORTSDIR}/textproc/p5-SVG \ p5-SVG-Graph>=0:${PORTSDIR}/graphics/p5-SVG-Graph \ + p5-Test-Most>=0:${PORTSDIR}/devel/p5-Test-Most \ p5-Text-Shellwords>=0:${PORTSDIR}/textproc/p5-Text-Shellwords \ + p5-Text-Tabs+Wrap>=0:${PORTSDIR}/textproc/p5-Text-Tabs+Wrap \ + p5-URI>=0:${PORTSDIR}/net/p5-URI \ p5-XML-DOM>=0:${PORTSDIR}/textproc/p5-XML-DOM \ p5-XML-DOM-XPath>=0:${PORTSDIR}/textproc/p5-XML-DOM-XPath \ - p5-libxml>=0:${PORTSDIR}/textproc/p5-libxml \ - p5-XML-SAX>=0:${PORTSDIR}/textproc/p5-XML-SAX \ + p5-XML-LibXML>=0:${PORTSDIR}/textproc/p5-XML-LibXML \ + p5-XML-Parser>=0:${PORTSDIR}/textproc/p5-XML-Parser \ p5-XML-SAX>=0:${PORTSDIR}/textproc/p5-XML-SAX \ p5-XML-SAX-Writer>=0:${PORTSDIR}/textproc/p5-XML-SAX-Writer \ + p5-XML-Simple>=2:${PORTSDIR}/textproc/p5-XML-Simple \ p5-XML-Twig>=0:${PORTSDIR}/textproc/p5-XML-Twig \ p5-XML-Writer>=0:${PORTSDIR}/textproc/p5-XML-Writer \ - p5-Clone>=0:${PORTSDIR}/devel/p5-Clone \ - p5-DBD-mysql>=0:${PORTSDIR}/databases/p5-DBD-mysql \ - p5-GD>=0:${PORTSDIR}/graphics/p5-GD \ - p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \ - p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \ - p5-XML-Parser>=0:${PORTSDIR}/textproc/p5-XML-Parser \ - p5-Spreadsheet-ParseExcel>=0:${PORTSDIR}/textproc/p5-Spreadsheet-ParseExcel \ - p5-Convert-Binary-C>=0:${PORTSDIR}/converters/p5-Convert-Binary-C \ - p5-Algorithm-Munkres>=0:${PORTSDIR}/math/p5-Algorithm-Munkres \ - p5-Array-Compare>=0:${PORTSDIR}/misc/p5-Array-Compare \ - p5-GraphViz>=0:${PORTSDIR}/graphics/p5-GraphViz \ - p5-Math-Random>=0:${PORTSDIR}/math/p5-Math-Random \ - p5-PostScript>=0:${PORTSDIR}/print/p5-PostScript \ - p5-Set-Scalar>=0:${PORTSDIR}/devel/p5-Set-Scalar \ - p5-URI>=0:${PORTSDIR}/net/p5-URI \ - p5-Test-Most>=0:${PORTSDIR}/devel/p5-Test-Most \ - p5-HTML-TableExtract>=2:${PORTSDIR}/www/p5-HTML-TableExtract \ - p5-Sort-Naturally>=1:${PORTSDIR}/textproc/p5-Sort-Naturally \ - p5-XML-Simple>=2:${PORTSDIR}/textproc/p5-XML-Simple \ p5-YAML>=0:${PORTSDIR}/textproc/p5-YAML \ - p5-Error>=0:${PORTSDIR}/lang/p5-Error + p5-libwww>=0:${PORTSDIR}/www/p5-libwww \ + p5-libxml>=0:${PORTSDIR}/textproc/p5-libxml RUN_DEPENDS:= ${BUILD_DEPENDS} @@ -75,19 +71,15 @@ PGTEST_BUILD_DEPENDS= p5-DBD-Pg>=3:${PORTSDIR}/databases/p5-DBD-Pg SQLITETEST_RUN_DEPENDS= p5-DBD-SQLite>=1:${PORTSDIR}/databases/p5-DBD-SQLite SQLITETEST_BUILD_DEPENDS= p5-DBD-SQLite>=1:${PORTSDIR}/databases/p5-DBD-SQLite -.include <bsd.port.options.mk> - post-install: - ${MKDIR} ${STAGEDIR}${DATADIR} + @${MKDIR} ${STAGEDIR}${DATADIR} ${CP} -R ${WRKSRC}/scripts ${WRKSRC}/models ${STAGEDIR}${DATADIR} - ${MKDIR} ${STAGEDIR}${EXAMPLESDIR} + @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} ${CP} -R ${WRKSRC}/examples/* ${STAGEDIR}${EXAMPLESDIR} -.if ${PORT_OPTIONS:MDOCS} - ${MKDIR} ${STAGEDIR}${DOCSDIR} + @${MKDIR} ${STAGEDIR}${DOCSDIR} .for doc in AUTHORS BUGS Changes DEPENDENCIES DEPRECATED INSTALL LICENSE MANIFEST README ${INSTALL_MAN} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR} .endfor ${CP} -R ${WRKSRC}/doc ${STAGEDIR}${DOCSDIR} -.endif .include <bsd.port.mk> |