diff options
Diffstat (limited to 'biology/phrap/Makefile')
| -rw-r--r-- | biology/phrap/Makefile | 62 |
1 files changed, 62 insertions, 0 deletions
diff --git a/biology/phrap/Makefile b/biology/phrap/Makefile new file mode 100644 index 000000000000..094d772390aa --- /dev/null +++ b/biology/phrap/Makefile @@ -0,0 +1,62 @@ +# New ports collection makefile for: phrap +# Date created: 21 June 2005 +# Whom: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> +# +# $FreeBSD$ +# + +PORTNAME= phrap +PORTVERSION= 0.990329 +CATEGORIES= biology +MASTER_SITES= # put the tarball manually +DISTFILES= distrib.tar.Z +DIST_SUBDIR= ${PORTNAME} + +MAINTAINER= mzaki@biol.s.u-tokyo.ac.jp +COMMENT= Phrap is a program for assembling shotgun DNA sequence data + +RESTRICTED= Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use. + +NO_WRKSUBDIR= yes + +MAKEFILE= makefile +ALL_TARGET= all manyreads + +BINARIES= cluster cross_match cross_match.manyreads loco \ + phrap phrap.longreads phrap.manyreads swat +SCRIPTS= phrapview +.for f in ${BINARIES} ${SCRIPTS} +PLIST_FILES+= bin/${f} +.endfor + +PORTDATA= BLOSUM50 BLOSUM62 PAM250 mat50 mat70 penalty2 vector.seq +PORTDOCS= general.doc phrap.doc swat.doc + +.include <bsd.port.pre.mk> + +.for f in ${DISTFILES} +.if !exists(${DISTDIR}/${DIST_SUBDIR}/${f}) +IGNORE= you must request the source code \(${DISTFILES}\) via e-mail, place it manually in ${DISTDIR}/${DIST_SUBDIR}, and then try it again +.endif +.endfor + +do-install: +.for f in ${BINARIES} + @${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin/ + @${CHMOD} a-r ${PREFIX}/bin/${f} # as required by the agreement +.endfor +.for f in ${SCRIPTS} + @${INSTALL_SCRIPT} ${WRKSRC}/${f} ${PREFIX}/bin/ +.endfor + @${MKDIR} ${DATADIR} +.for f in ${PORTDATA} + @${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR} +.endfor +.if !defined(NOPORTDOCS) + @${MKDIR} ${DOCSDIR} +.for f in ${PORTDOCS} + @${INSTALL_DATA} ${WRKSRC}/${f} ${DOCSDIR} +.endfor +.endif + +.include <bsd.port.post.mk> |