diff options
Diffstat (limited to 'biology/phrap/files/patch-makefile')
| -rw-r--r-- | biology/phrap/files/patch-makefile | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/biology/phrap/files/patch-makefile b/biology/phrap/files/patch-makefile new file mode 100644 index 000000000000..7fccdb3846a1 --- /dev/null +++ b/biology/phrap/files/patch-makefile @@ -0,0 +1,27 @@ +--- makefile.orig 1999-03-11 15:13:20.000000000 +0900 ++++ makefile 2007-12-11 13:19:39.000000000 +0900 +@@ -23,8 +23,8 @@ + #*****************************************************************************/ + + # Makefile for swat, phrap, cross_match, phrapview; also swprobs (currently inactivated) +-CC= cc +-CFLAGS= -O2 ++CC?= cc ++#CFLAGS= -O2 + LFLAGS= -lm + + SWATOBJS= swat.o weibull.o +@@ -55,11 +55,11 @@ + + manyreads: + touch swat.h; +- make CFLAGS="-O2 -DMANYREADS" phrap cross_match; ++ make CFLAGS="$(CFLAGS) -DMANYREADS" phrap cross_match; + mv phrap phrap.manyreads; + mv cross_match cross_match.manyreads; + touch swat.h; +- make CFLAGS="-O2 -DLONGREADS" phrap; ++ make CFLAGS="$(CFLAGS) -DLONGREADS" phrap; + mv phrap phrap.longreads; + touch swat.h; + make phrap cross_match; |