diff options
Diffstat (limited to 'biology/ssaha/files/patch-MatchAligner.h')
| -rw-r--r-- | biology/ssaha/files/patch-MatchAligner.h | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/biology/ssaha/files/patch-MatchAligner.h b/biology/ssaha/files/patch-MatchAligner.h new file mode 100644 index 000000000000..1eafad595c91 --- /dev/null +++ b/biology/ssaha/files/patch-MatchAligner.h @@ -0,0 +1,33 @@ +--- ./QueryManager/MatchAligner.h.orig 2004-03-01 13:51:29.000000000 -0300 ++++ ./QueryManager/MatchAligner.h 2008-06-12 15:39:31.000000000 -0300 +@@ -315,13 +315,13 @@ + + static char getCodon( const char* pChar ) + { +- return ( ( (ttDNA[ *pChar ] ==nv) +- || (ttDNA[ *(pChar+1) ] ==nv) +- || (ttDNA[ *(pChar+2) ] ==nv) ) ++ return ( ( (ttDNA[ (int) *pChar ] ==nv) ++ || (ttDNA[ (int) *(pChar+1) ] ==nv) ++ || (ttDNA[ (int) *(pChar+2) ] ==nv) ) + ? 'X' +- : gResidueNames[ ttCodon[ ttDNA[ *(pChar) ] << 4 +- | ttDNA[ *(pChar+1) ] << 2 +- | ttDNA[ *(pChar+2) ] ] ] ); ++ : gResidueNames[ ttCodon[ ttDNA[ (int) *(pChar) ] << 4 ++ | ttDNA[ (int) *(pChar+1) ] << 2 ++ | ttDNA[ (int) *(pChar+2) ] ] ] ); + } // ~getCodon + + +@@ -519,8 +519,8 @@ + : public vector<vector<PATH_TYPE> > + { + public: +- typedef pair<vector<vector<PATH_TYPE> >::iterator, +- vector<PATH_TYPE>::iterator> CellIterator; ++ typedef pair<typename vector<vector<PATH_TYPE> >::iterator, ++ typename vector<PATH_TYPE>::iterator> CellIterator; + + template<class MATRIX_FILLER> ScoreType fillIn( MATRIX_FILLER& doMatrix ) + { |