diff options
Diffstat (limited to 'biology/tRNAscan-SE/files/patch-aa')
| -rw-r--r-- | biology/tRNAscan-SE/files/patch-aa | 35 |
1 files changed, 0 insertions, 35 deletions
diff --git a/biology/tRNAscan-SE/files/patch-aa b/biology/tRNAscan-SE/files/patch-aa deleted file mode 100644 index 82f9a3b420a0..000000000000 --- a/biology/tRNAscan-SE/files/patch-aa +++ /dev/null @@ -1,35 +0,0 @@ ---- Makefile.orig Sat Oct 7 00:16:41 2000 -+++ Makefile Thu Dec 20 17:26:37 2001 -@@ -19,10 +19,11 @@ - ## (this could be 'perl5' or otherwise on some systems) - PERLBIN = perl - -+prefix = ${PREFIX} - ## where you want things installed --BINDIR = $(HOME)/bin --LIBDIR = $(HOME)/lib/tRNAscan-SE --MANDIR = $(HOME)/man -+BINDIR = $(prefix)/bin -+LIBDIR = $(prefix)/share/tRNAscan-SE -+MANDIR = $(prefix)/man - - ## NOTE !! If you later manually move the location of - ## binaries or data files in the BINDIR or LIBDIR directories, -@@ -106,7 +107,7 @@ - - MPOBJ = mpviterbi.o mp-dbviterbi.o - --all: $(PROGS) tRNAscanSE setpaths -+all: $(PROGS) tRNAscanSE - - covels-SE: $(OBJ) scan_main.o - $(CC) $(CFLAGS) $(RFLAGS) -o covels-SE scan_main.o $(OBJ) $(LIBS) -@@ -178,7 +179,7 @@ - @echo "" - @rm -f testrun.out - @echo "tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa" -- @if tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \ -+ @if ./tRNAscan-SE -d -y -o testrun.out Demo/F22B7.fa; \ - then echo ""; \ - else echo "tRNAscan-SE did NOT complete properly."; fi - @if diff testrun.out testrun.ref; \ |